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Timeline

A structured record of how AI is entering scientific work: from models and benchmarks to experiments, infrastructure, corrections and deployment.

2026

: timeline +18

Flagship merges the platforms of Cellarity, Etiome and Empress Therapeutics into Etcelera, an AI drug discovery company led by Adrian Rawcliffe

What happened: Flagship Pioneering combined the platforms of three of its companies, which BioPharma Dive says had raised $374M between them, with its in-house AI unit, Pioneering Intelligence. Adrian Rawcliffe, formerly CEO of Adaptimmune, is CEO; Flagship senior partner Alec Reynolds chairs the board, and Noubar Afeyan is a co-founder. It starts with programmes in blood disorders such as myelofibrosis, in metabolism, including partnered MASH work, and in immunology. Cellarity's sickle cell drug CLY-124 goes to a separate company.

Why it matters: Each company held one kind of evidence: Cellarity read the state of whole cells, Etiome followed how a disease changes from stage to stage, and Empress showed what a molecule actually binds. Flagship is betting that the three together, plus data on how cells respond when a gene is silenced or a chemical is added, can tell which targets cause a disease, and so which drugs will work in patients before a trial. Reynolds framed the target as the roughly half of drugs that fail in Phase 2.

Evidence and limits: No new funding was announced. The 150-million-cell foundation model, which the release calls the industry's largest, and the more than 30 prediction models are the company's description; no result from them is shown.

↳ Flagship's other AI science company, founded in its own labs Lila Sciences emerges with $200 million for AI science factories
↳ The Flagship company that went public instead of merging Generate:Biomedicines prices a $400M Nasdaq IPO
+2PR Newswire ↗

ALLOX, a Barcelona spin-out co-founded by Ben Lehner, raises a $10.5M seed led by Asabys to find hidden control sites on hard drug targets

What happened: ALLOX closed a $10.5M (€9.4M) seed led by Asabys through its Sabadell Asabys II fund, with Spain's innovation agency CDTI, through Innvierte, and the Institut Català de Finances. It came out of Barcelona's Centre for Genomic Regulation; Júlia Domingo is CEO and co-founded it with André Faure, Pablo Baeza and Ben Lehner. Morten Graugaard, chief business officer of Orbis Medicines, becomes independent chair, and Asabys co-founder Clara Campàs sits on the board. The money goes to its mutation-mapping platform, its own AI models, a drug discovery team and small-molecule programmes.

Why it matters: Many disease proteins, such as transcription factors and proteins that work by gripping other proteins, offer no pocket for a drug to sit in. ALLOX looks for other spots on the protein that still change what it does, by measuring thousands of mutations at once. Faure, Domingo and Lehner published the method in Nature in 2022: neural networks fitted to those measurements mapped such sites across two common human protein domains. The round pays for AI models that predict these sites from the company's own data.

Evidence and limits: A financing, not a result: the release names no target or new data, and the company site names one preclinical inhibitor, ALX-001, with nothing shown. The 2022 paper mapped two small protein domains in the lab; nothing public yet shows a drug made against a site found this way.

GlobeNewswire ↗

EVENET, a model pretrained on 500 million simulated LHC collisions, finds the known Upsilon meson in real CMS data at 7.6 sigma, above the 6.4 sigma of the published method

What happened: Physicists at National Taiwan University, Shanghai Jiao Tong University, SLAC, the University of Washington and others pretrained a model of whole collision events on 500 million simulated events, then tuned it for four analyses. In simulated searches for new heavy particles and exotic Higgs decays it beat XGBoost, TabPFN and SPANet, most clearly with little data, and in simulation it measured top-quark entanglement 37% more precisely than a published benchmark. In real 2016 CMS data it found the known Upsilon meson at 7.6 sigma, against 6.4 for the published method.

Why it matters: Collider physicists today train a separate model for each analysis. EVENET tests whether one pretrained model can serve many: one large pretraining run, on 512 GPUs at NERSC, then cheap fine-tuning for each new question. The gain is largest in searches for rare signals, where each new-particle hypothesis comes with only thousands of simulated signal events. The pretraining data and three of the four downstream datasets are public on Hugging Face under the MIT licence.

Evidence and limits: Only one test uses real collisions, and it finds a particle already known; the other three run on simulated events. The authors say the model does not yet carry detector and theory uncertainties through, and that use in a live LHC analysis is the decisive test.

By Ting-Hsiang Hsu, Vinicius Mikuni, Yuan-Tang Chou, Yulei Zhang

↳ The other particle-physics result on the record, computed rather than trained Claude computes a nine-loop amplitude in a toy particle-physics theory, checked by the physicist who reached eight loops
+1Nature Machine Intelligence ↗

With analysis steps written by the researchers, 11 AI models processed a catalysis dataset that none finished without them, and the experiments they proposed were run

What happened: Fanxu Meng, Kedar Hippalgaonkar and colleagues at UC Berkeley's Singapore centre, Nanyang Technological University, the National University of Singapore, Monash University and Lawrence Berkeley National Laboratory built SKIER: AI models call analysis procedures the researchers wrote, and plain code does the calculations. On 49 records from the group's own published study of methanol oxidation on platinum, all 11 AI configurations finished the data processing with the shared procedures and none without. The models then proposed three mechanisms and tests to tell them apart; the team ran the tests.

Why it matters: AI models are increasingly asked to interpret experiments and propose mechanisms, and their claims are often hard to trace to the measurements behind them. SKIER splits the work: researchers fix how each measurement is analysed, the model chooses and reasons, and each conclusion points back to its data. In the case study the loop closed once: isotope-labelling, residence-time and oxygen-exchange tests argued against two of the three mechanisms and placed C-O bond cleavage before formic acid forms.

Evidence and limits: One reaction system, from the authors' own earlier study. The 100 single-choice questions on which GPT-5.6-sol scored 100% were expert-designed, and the paper does not say by whom. The authors note that intermediates below the detection limit and pathways they did not consider are not ruled out. A preprint.

By Fanxu Meng, Kedar Hippalgaonkar

+2ChemRxiv ↗

BioGeometry closes an A+ round led by China Life Capital, taking its A series past $100M for molecule and virtual-cell models

What happened: Existing investors Shanghai Biomedical Innovation Fund and Fortune Venture Capital put in more; Guokai Kechuang, Ruili Investment and Guofang Capital joined. The Beijing company, founded by Jian Tang of Mila and HEC Montréal, gives no size for this round, only that its A series, which includes a June round of several hundred million yuan, now tops $100M. The money is for GeoFlow, its molecule model, GeoCell, a model of how cells respond to perturbations, a larger automated lab and its own pipeline.

Why it matters: The round funds a move from designing a molecule to choosing what it is for: GeoCell is meant to say which target, which disease and which patients a design suits, and the automated lab is to feed results back into both models. Qiushan Guo, a partner at the Shanghai fund, which co-led the June round, said the company has carried its models from molecules to cells. The only revenue it puts a date on comes from synthetic biology, not drugs: it says biosynthesised borneol, 80% cheaper than plant extraction, will bring in revenue at scale in 2027.

Evidence and limits: The $100M is the A series as a whole, not this round. The IND filings for several bispecific antibodies in 2027, the borneol cost cut and the June claim of a nearly 20% hit rate across more than 20 antibody targets are the company's statements, with no data shown.

PEdaily ↗

Formation Bio, an AI drug developer, sets up a $600M fund of its own to buy and develop 10 to 15 clinical-stage drugs

What happened: The New York company buys or licenses Phase 1 and Phase 2 drugs from other companies and runs their development itself. Its new Drug Development Accelerator Fund has $600M committed by research foundations, endowments, hospitals and philanthropies; Formation Bio is the general partner through a subsidiary and puts in money of its own. Each drug sits in its own company. CEO and co-founder Benjamine Liu, chief business officer David Steinberg and chief scientific officer Michael Ehlers spoke in the release.

Why it matters: It is another way for an AI company to pay for drug development: Formation Bio raises money against individual drugs, and investors buy into the drugs, not the platform. Liu said it opens paths to liquidity without selling the parent company and should lower its cost of capital over time. The claim to test is that one shared, AI-supported development team takes each drug to a clinical result more cheaply, within 2 to 4 years of buying it.

Evidence and limits: This is a fund for drug programmes, not an equity round in Formation Bio. No limited partner and no drug the fund will buy is named, and the release shows no case where the platform shortened a programme.

PR Newswire via BioSpace ↗

Basel's Atlas Bio raises a $10M seed led by Creandum to run drug trials on virtual patients before Phase II

What happened: Creandum led the seed, and its partner Katharina Wilhelm joins the board. The company also disclosed an earlier $2.5M pre-seed led by First Momentum Ventures and LEA Partners, for $12.5M in all. Simon Romanski (CEO) and Sebastian Bayer (CTO, who led language-model research at Google) founded it in 2024. Its model, trained on about 2 million RNA readouts from human tissue, predicts how each patient in a virtual cohort responds to a treatment. The money goes to hiring, validating the platform and new pharma clients.

Why it matters: Phase II is where most drugs fail, and where a developer learns which disease and which patients a molecule suits. Atlas wants to answer that before the trial, by running the same virtual patients through several treatments and diseases, a comparison no real trial can make. It is the second in silico trial company to raise money in two days, after adsilico's virtual patients for heart devices; this one is for drugs, starting in immunology. Wilhelm calls clinical development the second wave of AI in drugs, after drug design.

Evidence and limits: The case studies on the company's site, including a predicted Phase II miss that the trial then confirmed, are its own, with methods and cohorts shown to partners only under NDA. That a Basel client skipped animal tests on the strength of its simulation is the company's statement, and the client is unnamed.

Tech.eu ↗

BigHat and Anthropic improve two antibody leads over seven rounds, after finding one thermal measure did not measure what its name said

What happened: BigHat Biosciences and Anthropic ran two lead-optimisation campaigns on BigHat's Milliner platform, about 1,010 designs over seven rounds in all, four on one molecule and three on the other, with Claude in the loop. Reading the raw instrument curves, they found a thermal measure on each scaffold did not measure what its name implied: on the nanobody, the clumping-onset temperature. They fitted a physical model of the curves, chose new measures and changed the protocol. Both leads beat their parents on binding, heat stability and clumping.

Why it matters: A closed-loop lab optimises the number it is given, so a measure that stands in badly for what a drug needs cannot be rescued by a better model or more data. The gain here came from people and a model reading the instrument signal and changing the experiment, not from more rounds of search. Published lab-in-the-loop work mostly takes the reported assay value as a correct label; this campaign did not.

Evidence and limits: Both companies' own report, not peer reviewed, every measurement in BigHat's lab: two molecules on one platform. The report says each lead's values rest on one or two replicates and that confirmation runs come first, and the new measures were chosen inside the campaign that produced them. The leads are antibody fragments, not drugs, and nothing is tested in animals or people.

By Samuel Stanton, Peyton Greenside

↳ BigHat's first AI-designed drug in people, from the same platform BigHat doses the first patient with BHB810, its first AI-designed drug in humans
↳ The post that reports this campaign among six partnerships Anthropic buys a one-person drug company and starts running drug programmes of its own
BigHat technical report ↗

Generate:Biomedicines cuts a CAR's signalling tail to 45 amino acids, under a third of the clinical design, and reports stronger function

What happened: Over three rounds of design and measurement with AI agents, the company built a 45-amino-acid signalling tail for a CAR, less than a third the length of the 4-1BB-CD3zeta domain in approved therapies. Against that domain it raised receptor levels on the cell surface and antigen-driven IFN-gamma release, with none detected when antigen was absent; it kept killing going longer after mRNA delivery, carried four receptors on one mRNA dose, and depleted more B cells in donors' blood cells after lentiviral and lipid-nanoparticle delivery.

Why it matters: Shortening the tail was expected to cost function, because more activation motifs were read as stronger signalling. The short tail made more receptor per unit of mRNA, which is why the team could put four receptors on one dose, and the report suggests compact tails may lower the dose needed to make CAR T cells inside the body. It is also a worked case of agent-guided design: the agents proposed designs and revised them as measurements came in.

Evidence and limits: The company's own technical report, not peer reviewed, and all of it in cells: human blood cells from a few donors, no animal test. The report says how compact tails perform in a living animal, and how many cells carry all four receptors, remain unknown; exhaustion was not measured, and whether agent-guided design beats expert design, or needs fewer rounds, is untested against a matched baseline.

By Liam Bai, Wujie Wang, Jason Yi

↳ The post that reports this work among six partnerships Anthropic buys a one-person drug company and starts running drug programmes of its own
Generate technical report ↗

Across its runs, Enveda's document reviewer raised all 11 issues human reviewers found in 1,061 pages of batch records, and 7 they had not

What happened: Enveda tested CDP, its Claude-based checker for drug manufacturing batch records, on four executed records from one clinical campaign: 1,061 largely handwritten pages. Human reviewers had raised 11 actionable issues; CDP raised nine as direct matches and two judged intended matches, across its runs rather than in one pass. Single runs on Claude Opus 4.7 added 7 actionable comments no reviewer had raised. A review holding CDP's comments took 9.4 times less time.

Why it matters: Batch-record review is required before a batch of a drug is released, and Anthropic's post says Enveda's manufacturing chemists had been spending up to 75% of their time on paperwork. This is the regulated-paperwork end of drug development, which rarely gets measured at all, and the yardstick here is what human reviewers caught on real records rather than a score on a benchmark.

Evidence and limits: The company's own report, not peer reviewed: four records from one campaign, checked against reviewers' comments, two of the four reviewer arms being outside consultants. No CDP comment cited content the records do not contain, and each run also posted one misread at Major, and the human reviewers could consult earlier-step records CDP was not given. Whether the 7 extra comments matter is Enveda's judgment. The time figure comes from a review holding CDP's comments in advance.

By Andrew Martin, Brandy Schenck, Daniel H. Wee, Viswa Colluru

↳ The Series E that funds Enveda's clinical work Enveda raises $311M for medicines its AI finds in natural compounds
↳ The post that reports this work among six partnerships Anthropic buys a one-person drug company and starts running drug programmes of its own
Enveda technical report ↗

Anthropic buys a one-person drug company and starts running drug programmes of its own

What happened: On its Science page Anthropic said it has acquired Mithril Medicine, which was developing treatments for two rare childhood muscular dystrophies, and that its founder, Cody Tranbarger, has joined the company to continue that work and start further programmes. The same post reports research partnerships with six organisations: BigHat Biosciences, Bristol Myers Squibb, Divergence Labs, Enveda, Generate:Biomedicines and The Column Group, which is setting up a company, Pleiades, to run drug programmes with Claude.

Why it matters: A model supplier has become a drug developer. The partnerships put Anthropic's own scientists inside other companies' programmes, and the acquisition gives it programmes it owns, so it now carries the risk and would hold the result. The post also says Anthropic plans to scale this work up substantially.

Evidence and limits: No terms were disclosed for the acquisition. Anthropic says that if the candidates continue to hold up it expects a drug to be ready to start human trials as soon as late 2028, which is its own forecast, and the mouse results behind it are in a technical report it published itself, not peer reviewed; that report studies two tool molecules in a pilot study, not a candidate. Pleiades has no disclosed programme yet.

+4Anthropic ↗

A Claude-steered campaign designs 20 antibody arms that pull IgE off its receptor; of the eight titrated, three remove more than the approved drug does in the same assay and none clearly beats the parent

What happened: Omalizumab, the only approved biologic for food allergy, neutralises circulating IgE but does not effectively remove the kind bound to FcεRI on mast cells. Guided by its research team, Claude ran 22 phases toward a two-armed antibody that would prise it off. Of 91 disruptor designs screened at one concentration, 20 beat every negative control; eight were purified and titrated, three of them removing more than omalizumab from 25 to 400 nM. Three of 57 anchor designs bound IgE, at apparent affinities of 3.4 to 235 nM.

Why it matters: Pulling bound IgE off the receptor needs a precise geometry, which display and immunisation libraries cannot specify, so designing from a structure is the point here rather than a convenience. Activity survived as many as eight substitutions from the parent, and hits came from every design scope and method the campaign tried. Divergence says the two arms came in weeks rather than the months screening takes.

Evidence and limits: Divergence's own report, not peer reviewed, all biophysics on a sensor chip: no cells, no animals, the two-armed molecule not yet made. In the titration the report says the variants did not appear to improve on the parent sdAb026, the best of them matching it at most concentrations, and Anthropic's post summarising the work does not mention the parent. The anchor affinities may be confounded by avidity, and the method needed an existing disruptor's sequence and solved structure.

By Ezra Erives, Emilio Ferrara, Bowen Jing

↳ The post that reports this work among six partnerships Anthropic buys a one-person drug company and starts running drug programmes of its own
Divergence technical report ↗

DeepMind releases Genie 4 to trusted testers, a world model it pitches as a training environment for robots and agents, with not one number in the announcement

What happened: The model generates video together with music, ambient sound and interactive dialogue, which DeepMind calls its first real-time world model to generate audio natively, and it takes natural-language edits while a simulation runs, to change the weather, move the camera or add a person. It builds on the Gemini family, with Gemini Omni anchoring real-world appearance, and every output will carry a SynthID watermark.

Why it matters: DeepMind's stated purposes include developing training environments for robots and agents, and testing AI systems in different environments before taking them to the real world. One clip is generated from the prompt "Universal Robots UR5 holds a pipette and dispenses liquid into a lab plate, triggering tiny electric sparks", the only lab scene in a post whose testers are creative industries, journalism, education, gaming and engineering.

Evidence and limits: No benchmark, score or comparison with Genie 3 appears: it is clips, captions and an internal safety test with no result given. The two-minute consistency figure in press coverage is in neither post; neither gives a session length, and the post says object permanence can drift the longer a simulation runs. Trusted testers only, no public access.

By Raia Hadsell, Diego Rivas, Hang Qi

Google DeepMind ↗

Omabit raises a $2M seed led by Bright Ventures for an AI that analyses drug developers' own trial and genomic data

What happened: The San Francisco company, in Stanford's StartX summer 2026 cohort, puts a drug developer's trial, RNA-seq, variant and other data beside published studies, and runs and writes up the analysis a scientist asks for in plain language, starting with teams planning the next trial from completed ones. CEO and co-founder Elena Cassidy, Bright Ventures founder Lenore Champagne Beirne and scientific adviser Michael Snyder spoke in the release. The money goes to the platform and to hiring scientists and engineers.

Why it matters: It is a bet that the slow step in clinical development is analysis, not data: companies already hold the trial and genomic results that could explain who responded, but they sit in separate studies and systems. Omabit sells the joining-up and the analysis, including predictive models built on the company's own data, rather than new data.

Evidence and limits: The site's claim that an analysis takes a day instead of three months is the company's, with no case shown. No customer is named.

↳ Funding record Omabit · Seed · $2M →
Business Wire ↗

Biographica's CROP-1 predicts a crop gene's activity in each tissue and condition from its DNA plus which regulators are on, and designs edits aimed at one context

What happened: In a bioRxiv preprint, Paride Antinucci, Dominic Hall and colleagues at Biographica, a London crop-AI startup, feed a model a gene's DNA plus the measured levels of transcription factors, the proteins that switch genes on, in each tissue or condition. On held-out data from six plant species its median per-gene correlation across contexts is 0.831, against 0.486 for the same model without that input, and 57-246% above three fine-tuned genomic foundation models. It then designed edits of up to 20 DNA letters in soybean and tomato.

Why it matters: Many crop genes affect more than one trait, so an edit that helps in one tissue or condition can cause unwanted changes in others. A model that predicts expression per context lets a breeder rank candidate edits by the change wanted in one place and the change everywhere else, before any plant is edited. Biographica sells gene-editing targets to seed companies.

Evidence and limits: The edits exist only as predictions: none has been made in a plant and measured. The test data come from the public PlantExp collection and were scored by the company's own team, and the preprint is not peer reviewed.

By Paride Antinucci, Dominic Hall

bioRxiv ↗

Singapore puts S$150 million into MARVEL-AI, an A*STAR platform that pairs materials AI models with self-driving labs, with CuspAI among its partners

What happened: Deputy Prime Minister Gan Kim Yong announced MARVEL-AI at SWITCH 2026: a platform led by A*STAR, starting with S$150 million of government money, in which AI models pick candidate materials and design experiments and self-driving labs make and test them. It is anchored at A*STAR's Institute of Materials Research and Engineering, whose executive director, Xian Jun Loh, also leads MARVEL-AI. Named partners include ST Engineering, Heraeus Electronics and Foxconn Industrial Internet on materials, and CuspAI and Google Cloud on the AI side.

Why it matters: The speech names the gap it is meant to close: models such as Google's GNoME and Microsoft's MatterGen propose materials, but a material still has to be made, tested and manufactured before industry can use it. MARVEL-AI puts the models and the labs in one national programme and opens its equipment, testing and researchers to companies, startups and SMEs included. CuspAI, which designs materials with AI, will connect its system to the platform's automated labs.

Evidence and limits: This is an announcement: the speech and reports give no split of the S$150 million, no timeline and no material yet. The figure of up to 470 alloy samples a day, more than 400 times conventional throughput, describes an existing lab process Enterprise Singapore cited, not a MARVEL-AI result.

Singapore METI ↗

Crystal-structure prediction finds all seven solved forms of acridine among 15 picks, and of the machine-learned potentials tried, only one tuned on acridine gets their stability order right

What happened: Adam Lahouari, Jutta Rogal and colleagues at New York University and the Flatiron Institute studied acridine, a small molecule with at least eight crystal forms. Melt experiments solved the structure of form VIII for the first time. Their CrystalMath method kept 15 of 341,683 generated structures without computing any energy, and the 15 include all seven forms with known structures, form VIII among them. A MACE potential fine-tuned on acridine, with full free-energy calculations, reproduced the switch from form II to form III as temperature rises that experiments show.

Why it matters: One molecule can crystallize in several forms that behave differently, which matters for drugs, organic electronics and agrochemicals, and crystal-structure prediction with machine-learned potentials is how the field hopes to rank the forms before making them. Here the ranking step needed tuning: four off-the-shelf foundation potentials put the forms in the wrong order, and simpler free-energy approximations missed the observed crossovers. The study also grows acridine from the melt with 18 additives and finds the two strongest effects match computed defect energies.

Evidence and limits: One molecule. The predicted crossover between the two most stable forms sits near 290 K, against about 318 K measured, some observed transformations disagree with the free-energy curves, and form IV was left out of them. The additive link rests on two of the 18 additives. A preprint.

By Adam Lahouari, Jutta Rogal

arXiv 2610.37597 ↗

Leeds spinout adsilico raises a £10M Series A to test heart valves and stents on AI-built virtual patients

What happened: PXN Ventures led the round, with existing investors Northern Gritstone, which put in £5M, and Parkwalk. adsilico was founded in 2024 by Sheena Macpherson, its CEO, Nishant Ravikumar and Zeike Taylor. Its Virtual Chimera platform builds virtual hearts and blood vessels from anonymised scans with generative AI and runs physics simulations of a device inside each. The money goes to the heart models, neurovascular devices and a team growing from 14 to 34.

Why it matters: A device trial enrols a few hundred patients, so many body types are never tested. adsilico's answer pairs a generative model of anatomy with physics simulation, an in silico trial: the device is tested on thousands of virtual bodies before real ones, in a field where regulators decide what evidence counts.

Evidence and limits: The company names completed projects with heart-valve and neurovascular device makers but no customer, and no validation of the virtual patients against real outcomes is cited. That PXN led comes from Tech.eu; Northern Gritstone's own post lists the investors without saying who led.

Northern Gritstone ↗

Anthropic files to list as ANT and names scientific research and lab robotics among the new markets frontier AI may open

What happened: The S-1, filed on 26 October, shows $16.3bn of revenue for the first half of 2026 against $4.6bn for all of 2025, and an operating loss narrowed to $693m from $2.1bn. The $80.7bn net loss is almost all a non-cash $72.4bn remeasurement of convertible notes, derivatives and SAFEs. Compute commitments include at least $114.5bn with Google, $110bn with Amazon and $44.9bn with Microsoft, owed regardless of usage.

Why it matters: For science, the filing says frontier AI 'may extend' to robotics and to scientific research, including drug discovery and materials science, and that Claude with the Model Hardware Standard can 'now' operate microscopes, liquid handlers and robotic arms. Its vision of 'Powerful AI' adds tasks running for weeks and 'compressing decades of scientific progress into years'. In the accounts, though, there is one segment, and the life sciences lab appears among the risk factors.

Evidence and limits: The June figures are unaudited interim ones. The three cloud commitments are three of seven named, with $125bn to $150bn more TPU compute estimated outside the table, and the aggregate line is blank. The top five customers were about a quarter of revenue. A Founder LLC's new share class carries 50.1% of the vote, and the safety trust's own class elects a majority of the board.

↳ The lab the filing now names as a risk, first reported in September Anthropic confirms it has built a physical wet lab for biology research
+1SEC Form S-1 ↗

A designed protein scaffold binds a metal photocatalyst, and five evolved mutations turn it into an enantioselective enzyme reaching 50,000 turnovers

What happened: Jared Lewis's group at Indiana University, with David Baker, tested 96 designs; 63 expressed, and one scaffold called DE3 bound one mirror image of an iridium photocatalyst at 94% enantiomeric excess. As designed it gave low selectivity in catalysis. Screening mutations reached a 3:97 enantiomeric ratio, with turnovers above 50,000 in air and the protein reusable over three cycles.

Why it matters: Generative design supplied a pocket that holds a cofactor nature has no protein for, which is what the field could not get from existing folds. On this reaction the enantioselectivity came from screening mutations afterwards; a second design campaign later reached 90:10 on a different reaction with no evolution at all. Metal polypyridine photocatalysts had resisted both routes until now.

Evidence and limits: One scaffold carried through, out of five folds tested for binding. The pocket was designed around a ruthenium cofactor and bound only iridium analogues, and no cofactor-bound structure was obtained. Other reactions in the scope are only moderately selective. Designed and evaluated by the same groups. An accelerated preview.

By Sandip Mishra, David Baker, Jared C. Lewis

Nature ↗

Texas A&M gets $2M to build a robot-run foundry that designs, melts and tests new metal alloys

What happened: A grant from the WoodNext Foundation, the philanthropy of Roku founder Anthony Wood and Susan Wood, funds the Aggie AI Foundry in the university's materials science department. AI trained on physical models and past alloy work proposes compositions, and robot arms mix, melt and test them at up to 3,000 °C. Department head Ibrahim Karaman and Raymundo Arróyave lead it; the university says it will cut alloy development from months to a week or less.

Why it matters: The university says existing self-driving labs handle materials that are easy to make and process, while new alloys have to be melted and tested at very high temperatures; Arróyave adds that no computer can yet predict how one will behave. A lab that runs that whole loop for metals would test whether AI-led, robot-run discovery can reach the structural materials used in energy, aerospace and medicine.

Evidence and limits: This is a grant to build the lab, not a working lab: no opening date, throughput or result is given. That it is the first lab of its kind in academia, and the months-to-a-week speed-up, are the university's own claims.

Texas A&M Stories ↗

OpenAI and Anthropic each claim a subexponential 3-SAT algorithm refuting the Exponential Time Hypothesis, each checked in Lean, neither checked by anyone outside

What happened: OpenAI's manuscript, dated 25 October and added to its public repository the next day with a Lean formalization, gives a deterministic algorithm that counts the satisfying assignments of fixed-width CNF formulas in subexponential time. Anthropic's 49-page paper, dated 26 October and pushed on the 27th, claims the same thing and prints its author as Claude, Anthropic. It dates its model's discovery to 16 October.

Why it matters: The hypothesis has organised decades of lower-bound work: Anthropic's paper says a literature search by Claude found more than 800 papers proving a result of their own only under it or something stronger. If either proof holds, those conditional results have to be read again, and Ryan Williams, who is helping organise the review, says that if true it should move every computer scientist's weight a little toward P=NP.

Evidence and limits: Nobody outside either company has verified either proof. Lean checks that a proof follows from a formal statement, not that the statement means what the paper claims; Anthropic writes that down and adds that at the time of writing no person is known to have checked its Lean. OpenAI's scope note formalizes a weaker bound than its manuscript, on canonically encoded inputs, still subexponential. Anthropic calls it purely asymptotic.

openai/math on GitHub ↗

OpenAI arranged its examiners before announcing, and the group it arranged wrote to its field to say the involvement is not certification

What happened: OpenAI told three complexity theorists it had the result and would release it, and asked them to organise its examination. Russell Impagliazzo and Ramamohan Paturi at UC San Diego and Ryan Williams at MIT wrote to their field the same day: "Our involvement should not be taken as certification of the claim." Williams said on his own account that the group signed no NDAs and takes no pay, and that OpenAI agreed to release its raw data and sponsor a conference.

Why it matters: Who certifies a machine's result is what the last six weeks have been about, and here a lab named its examiners before releasing the claim. The letter is them refusing the role that implies while keeping their leverage: Williams says they asked for the raw data and a sponsored conference and OpenAI agreed, and the letter says the effort should confer ownership on no company and no chosen few, themselves included.

Evidence and limits: OpenAI's announcement page is 403 here, so its own account is not quoted; its history file calls the three an independent working group, naming no others. The physics result Al Jazeera reports as deferred has no public artifact, and OpenAI's 721-manuscript maths catalogue carries no quantum chromodynamics paper. The NDA, payment, data and conference points are Williams's words, not the letter's, which is undated.

↳ An advisory group with no decision-making power, five weeks earlier Nine mathematicians form an independent group to referee OpenAI's math claims
↳ The complaint about announcing ahead of verification that this answers 25 Fields Medalists warn of a “severe misalignment” between AI labs and mathematics
Open letter to the TCS community ↗

A claimed proof of the local smoothing conjecture in every dimension carries the Kakeya conjecture with it, where the published record had reached three dimensions

What happened: OpenAI's 59-page paper, its author line reading OpenAI, dated 25 October and added to its public repository the next day, proves Sogge's conjecture for every spatial dimension at least two, with arbitrarily small Sobolev loss and none at p=2. From it the paper deduces the Bochner-Riesz conjecture, sharp bounds for Stein's square function, and the Kakeya and Nikodym maximal conjectures. OpenAI says it is releasing the model's output directly.

Why it matters: The published record had the plane from Larry Guth, Hong Wang and Ruixiang Zhang, and three-dimensional Kakeya from Hong Wang and Joshua Zahl last year; this claims every dimension at once, and cites two OpenAI preprints from September that it supersedes. Unlike the complexity result released the same day, the Lean here covers the headline claims: the local smoothing bound in every dimension, and that a set holding a unit segment in every direction has full Hausdorff dimension.

Evidence and limits: Nobody outside OpenAI has checked it, and OpenAI's own repository calls these manuscripts raw research data rather than polished papers. The restriction estimates for the sphere, paraboloid and cone hold only inside the conjectured range, so that conjecture is not settled here. The same repository withdrew three manuscripts on 7 October over a sign error.

↳ The same repository and the same practice of releasing model output directly OpenAI releases 722 maths manuscripts from the unreleased model behind its Navier–Stokes claim
openai/math on GitHub ↗

POISK, 89,074 antibody-antigen records mined out of patents, asks whether structure models can pick the real binder: the best manages 72%

What happened: A Roche team at Prescient Design and Large Molecule Research used a language-model pipeline to pull 89,074 antibody-antigen records out of 10,110 US patents, then built 11,247 pairs: an antibody a patent says binds, with no solved structure, against a sequence-similar decoy. Six structure models were scored. Protenix-v2 led at 72% of pairs and 87% on its most confident half, and picked the true binder out of 50 candidates 29% of the time. The best model touched a listed epitope residue in only 62.8% of cases.

Why it matters: Teams screening designed antibodies read a model's folding confidence as a stand-in for binding. This puts a number on what that is worth: much better than picking at random, nowhere near enough to name the one candidate to make. And telling a binder from a decoy does not mean the pose is right, so reading an epitope off these models is a separate claim these numbers do not support.

Evidence and limits: Nothing here was assayed: the binders are what patents claim, the non-binders are repertoire antibodies assumed not to bind, so the accuracy is against a constructed negative set rather than measured affinities. The structures were not in the models' training data; the patent text may have been. The preprint is CC BY and says the dataset is released, without stating its licence. Not peer reviewed, and the full text was not read.

By Daria Tupikina, Andrea Roncoli, Alexander Bujotzek, Brennan Abanades

bioRxiv ↗

ChronoSyn learns the order in which materials were first reported, and picks out real materials more often than the same model with the years shuffled

What happened: Junkil Park and Aron Walsh at Imperial College London gave a composition-only synthesizability model a second task: rank known materials by the year each was first reported in the ICSD crystal database. On about 10,000 held-out reported materials it recovered 52.4%, against 47.0% for the model it extends and 48.4% with the years shuffled, all at one calibrated threshold where chance is 8.1%. Trained only on materials reported up to 2018, it put 7 later-reported compositions in its top 100, against 3 for the baseline.

Why it matters: Generative models now propose candidate materials far faster than labs can try them, so the question is which to make first. Synthesizability models usually treat every reported material as an equal example. This one uses the reporting order as free extra supervision, on the authors' reading that the order carries which precursors, methods and applications made each material reachable. The shuffled-year control is what ties most of the gain to the order itself rather than to the added task.

Evidence and limits: All checks run on existing databases. The authors say learning from history may favour chemistry already studied and score unexplored families lower. It reads composition only. The authors say the largest gaps come in the top 100 at the later cutoffs, where the statistical uncertainty is also larger. A preprint.

By Junkil Park, Aron Walsh

arXiv 2610.36193 ↗Read More · AI4S Brief →

A small add-on layer corrects a foundation interatomic model's melting points without retraining it: gold goes from 844 K to 1346 K, against 1337 K assessed

What happened: Sarath Menon, Braulio Sánchez Ortega and Ralf Drautz at ICAMS, Ruhr University Bochum, add a linear correction on top of GRACE, a foundation interatomic potential, fitted to free energies computed in simulation so that phase transitions land on the assessed SGTE values. Across 11 metals and 14 transitions, every corrected temperature falls within the set tolerance: 15 K for melting, 50 K for solid to solid. Gold melted at 844 K in GRACE and at 1346 K after correction. For titanium it took about 55 H100 GPU hours.

Why it matters: Foundation interatomic potentials learn from DFT data, and an error of a few meV per atom in which phase is more stable can move a melting point by hundreds of kelvin. This layer fixes the balance between phases without touching the base model: it needs only the energies and structures the model produces, not its parameters or training data, so in principle it fits any potential, open or closed. Copper's melting curve, fitted only at zero pressure, then follows measurements within 15 K up to 4 GPa.

Evidence and limits: The corrected temperatures are fitted to the SGTE values, so hitting them is calibration, not prediction, as the authors say. The layer can only rebalance phases the base model already describes and cannot add missing physics such as magnetism. Where the correction is large it moves other properties too, mostly towards experiment: liquid gold and silver become 3 to 6% denser, but vacancy energies move away from experiment for vanadium and aluminium.

By Sarath Menon, Braulio Sánchez Ortega, Ralf Drautz

arXiv 2610.34551 ↗

ByteDance Seed and Peking University build exact total spin into neural network wavefunctions, and resolve the spin ladders of iron-sulfur clusters

What happened: Ruichen Li, Ji Chen, Weiluo Ren and colleagues at ByteDance Seed and Peking University split a real-space wavefunction into a spatial part, computed by a neural network (LapNet), and a spin part built to carry one exact total spin. Earlier neural network methods added a spin penalty to training, which can leave the wavefunction stuck mixing spins. The method matched experimental singlet-triplet gaps of biradical molecules about as well as the penalty method, gave an antiferromagnetic spin ladder for [Fe2S2] and a spin gap for an [Fe4S4] cluster.

Why it matters: Iron-sulfur clusters are central to biological nitrogen fixation, and their many spin states of nearly equal energy are where standard methods such as DFT, and even CCSD(T), can go wrong. With spin built in by construction, a calculation cannot drift into the wrong spin state, and chemists' own ideas (core and active orbitals, a first guess at how the spins couple) can be written into the network. With 10 active orbitals it reproduced the local spin trend on [Fe2S2(SCH3)4] that DMRG needed 32 to show.

Evidence and limits: Everything is computed. The iron-sulfur results have no experimental reference: they are compared with other calculations (FCIQMC, DMRG), and for [Fe4S4] the authors say the order of the three methods' gaps is not tied to any one cause. The November 2025 preprint called that gap more accurate; the published version drops the claim. Only the biradical gaps are checked against experiment.

By Ruichen Li, Ji Chen, Weiluo Ren

Nature Communications ↗

The UK funds an AI Biosecurity Lab with £100m, alongside up to £200m in credits from OpenAI and Anthropic

What happened: The Cabinet Office announced the AI Biosecurity Lab, an independent non-profit it calls the world's first dedicated AI biosecurity organisation, meant to detect biological threats earlier and speed up vaccines and other countermeasures. OpenAI is putting in £100m of compute and model credits through its Rosalind Biodefense programme, Anthropic up to £100m in credits, access and support. Google DeepMind and Basecamp Research join as research partners, not funders.

Why it matters: The £300m headline is £100m of public money; the rest is credits and access rather than cash, and the research partners give access, not money. It also puts frontier labs inside a national function: a National AI Biosecurity Initiative puts the lab with UKHSA, APHA and Dstl, and informs the MHRA's regulation of AI-designed medicines.

Evidence and limits: No budget breakdown, no timeline and no named staff; the scientific advisory committee is still to be announced. Anthropic's £100m is an 'up to' figure, and the page gives no period for either.

+2GOV.UK ↗

Calibrated uncertainty carries only unevenly out of distribution, and in active learning it mostly beats neither random sampling nor no calibration at all

What happened: A Toronto, NIST and KAUST team compared deep-ensemble uncertainty against loss-landscape estimates: ALIGNN on band gap and formation energy, a multilayer perceptron on solubility. Calibration methods generalised only variably from in-domain to out-of-domain data, and calibrated uncertainties generally failed to cut the data an active-learning campaign needed on out-of-distribution data. Random forests and XGBoost on the same tasks showed the same poor uncertainty.

Why it matters: Active learning picks the next sample by uncertainty, and a campaign aimed at new chemistry is out of distribution by construction. The same failure in tree models as in the network points at the data: at least partly intrinsic to it, the authors say, rather than model capacity alone.

Evidence and limits: All computed, on three public property tasks. The claim is about these architectures and calibration methods on these datasets, not a proof that no calibration can work. Peer reviewed.

By Ashley S. Dale, Jason Hattrick-Simpers

npj Computational Materials ↗

Pathos AI raises a $237M Series E led by Bristol Myers Squibb at about $3B, and takes its trial-steering AI from cancer into Alzheimer's with BMS and Tempus

What happened: Bristol Myers Squibb led; the company puts the post-money valuation at about $3B, up from $1.6B at its $365M Series D in May 2025. Pathos, a New York company co-founded in 2022 by Eric Lefkofsky and Ryan Fukushima and run by CEO Iker Huerga, licenses drugs other companies made and uses its agent platform, Foundry, to pick patients and adjust trials. BMS gets non-exclusive access to Foundry and three-year exclusive rights in neuroscience; Tempus will build a neurology patient dataset that Pathos licenses for $55M over five years.

Why it matters: Pathos puts its AI on the decisions that decide whether a trial succeeds: choosing which existing drug to run, in which patients, and when to change the trial. It does not design molecules. A drugmaker leading the round and taking access to the platform shows that one large pharma company will put money behind this use of AI, and the deal carries the method from cancer to Alzheimer's, a field with long trials and many failures. Simon Davies, who heads data and quantitative sciences at BMS, spoke for it in the announcement.

Evidence and limits: The round, the valuation and the deal terms are all from the company's two releases of 23 October; neither names the other investors or says whether BMS pays for its access beyond its stake. That Foundry identified JSKN016, an antibody-drug conjugate licensed from Alphamab, and has improved any trial's odds is the company's own account: no trial result from its approach has been published.

↳ Tempus licensing a foundation model for oncology Recursion licenses its RNA foundation model to Tempus for oncology diagnostics
Pathos AI ↗

Xaira built a camera-guided arm for instruments made for human hands, and over seven days it loaded 18 plates into an HPLC, 80% more than its model of weekday hours

What happened: Bo Wang, Ci Chu and colleagues describe X-Automate in a companion post to X-Scientist: an off-the-shelf six-axis arm with a camera on it, machined grippers and control software written in-house, directed by the same agent system. Its first target is an Agilent HPLC, which has no motorised door and a drawer that shifts when touched. Over seven days in the company's own lab, a mobile robot and the arm loaded and analysed 18 plates, holding the HPLC busy 97.2% of the time against 53.6% in its model of weekday hours.

Why it matters: Protein-design groups can now make thousands of candidates a week, and the measurement that tells them which ones worked is the step that waits for a person to open a door. Xaira's answer is vision on the arm rather than taught positions, which is what lets one arm move between instruments that were never meant to be automated, and it sidesteps the instrument maker's paid interface. The company says adapting the arm to another instrument now takes weeks rather than months.

Evidence and limits: A company blog post, no paper, with the company reporting its own demonstration and calling the week a technical proof of concept. One instrument, one week, and the 80% is against a schedule the company modelled rather than ran. Four interruptions in plate storage upstream needed a person to recover them, with no errors it attributes to the arm or the agents. The plates were analysed but no scientific finding is reported.

By Bo Wang, Ci Chu

Xaira Therapeutics blog ↗

Fudan's EdenGNN predicts charge density and the occupancies that go with it, so band structures come out at PAW accuracy

What happened: Hongjun Xiang and Xingao Gong's group at Fudan built an equivariant graph network that predicts both the charge density and the projector augmented-wave augmentation occupancies. Earlier universal models gave only a pseudo charge density, which cannot rebuild the electronic structure consistently. A trainable radial basis and a delta-learning step for charge transfer make it 50 to 150 times faster than earlier charge-density models; over 1,000 unseen materials its median band-energy error is 0.045 eV.

Why it matters: Charge density is what density functional theory solves for, so a model that reproduces it at the accuracy real codes use can stand in for the expensive self-consistent step rather than just predicting one property. The augmentation occupancies are what makes that possible here.

Evidence and limits: All computed, by the authors. The universal model covers non-magnetic structures. The speed is measured against two other machine-learning models and plane-wave DFT on one GPU. Peer reviewed.

By Xiwen Li, Hongjun Xiang

Nature Machine Intelligence ↗

Merging 55 crystal databases shows a MatterGen run's stiff hits all contain osmium, and 82 of 100 repeat known compositions

What happened: A Hong Kong University of Science and Technology team matched the crystals of 55 databases by structure into one set of 14.6 million crystals and 131.8 million property values, only 4.5% of whose crystal-property pairs carry a value. Given 100 verifications each, MatterGen conditioned on 400 GPa returned 100 stiff hits against screening's 55; but every generated hit contained osmium, 82 repeated a recorded composition, and screening's best hit was stiffer, 433.8 against 375.4 GPa.

Why it matters: A novelty share measures the reference set as much as the generator, and the usual reference is Materials Project alone. Against all 55 sources, GNoME's matches go from one to 18,234, its new share from 100% to 96.7%. The forward screen turned up 53,813 ultra-incompressible candidates with no recorded bulk modulus; 62 have been made, among them ReN2, measured at 428 GPa.

Evidence and limits: All computed, plus a literature audit: ReN2's 428 GPa is a published measurement, not a new experiment here, and the screen had predicted 349 GPa, 18% below it. The MatterGen runs are the authors' own, from released weights. A preprint.

By Zhilong Song, Zijun Pang, Lixue Cheng

arXiv 2610.32678 ↗

Simulated coatings for a sulfide solid electrolyte are made and measured: the lithiated ones keep 40 to 55% of the initial ionic conductivity after processing

What happened: An EPFL and Fribourg team fine-tuned the PET-MAD potential on r2SCAN data and ran large-scale molecular dynamics on Li6PS5Cl, screening carboxylic, sulfonic and phosphonic acid coatings by chain length and coverage. Simulation said lithiated head groups adsorb more strongly and that long-chain lithiated carboxylates form dense brush-like hydrophobic layers, with protection setting in near 8 Å. Infrared, impedance and H2S measurements followed.

Why it matters: The loop half closes: simulation set the chain length, and the H2S measurements run the same way, longer carboxylate chains suppressing it better. It also names the conflict rather than hiding it, since a thicker coating blocks lithium transport, so the best coating is a middle length.

Evidence and limits: One electrolyte, Li6PS5Cl, and one potential fine-tuned by the authors. The 40 to 55% figure is what is left after processing, not a gain. The experiments cannot rank the head groups, and the paper says so. A preprint.

By Zhiyi Wang, Leonie Braks, Hanna Türk, Davide Tisi

arXiv 2610.32905 ↗

AlphaGenome is turned on 17 million human-lineage substitutions and predicts 71,345 places where human gene regulation changed, nearly every fixed one older than the split from Neandertals

What happened: Tetsuya Yamada and Henrik Kaessmann at Heidelberg, with Svante Pääbo at the Max Planck Institute for Evolutionary Anthropology, predicted the regulatory effect of every single-nucleotide substitution on the human lineage across 305 tissues and cell types. Most of the 71,345 gains sit outside the regions evolution researchers had flagged as fast-changing, and more often than not they come from a regulatory element being reused in a new tissue rather than a new one appearing.

Why it matters: The question of which non-coding changes made humans human has been stuck on data nobody can get: great-ape tissue panels are thin, and no functional measurement is possible on an extinct hominin at all. A sequence model sidesteps that, because it scores a reconstructed ancestral allele as readily as the living one. The payoff here is the archaic comparison: nearly every gain now fixed in humans was already there before the split, so the modern-human-specific ones are few, and the paper names which ones move gene expression most.

Evidence and limits: The map is prediction, not measurement. Where it could be checked, against accessibility measured in four great apes' cell lines, AlphaGenome beat Enformer and ChromBPNet and 82.7% of its strongest calls held up, against 31.1% of controls, but it recovers only a quarter to a half of the measured human-specific changes depending on the threshold, and misses clustered gains more often than isolated ones. A preprint.

By Tetsuya Yamada, Henrik Kaessmann

↳ The model being used here, and the record's first entry on it AlphaGenome predicts regulatory effects across long DNA sequences
↳ The same model run at scale over human variants, a month earlier AlphaGenome Atlas precomputes nine billion DNA variant effects
bioRxiv 2026.10.22.760916 ↗

Refining the reconstruction with a neural network recovers atom-by-atom electron tomography at a sixth of the electron dose, on one re-read tilt series

What happened: Jihan Zhou's group at Peking University put a two-stage network after the reconstruction step: a ResUNet-3D variant corrects distortions across the volume, then a set transformer reads the shape of the electron density around each atom to name its element. Trained on 17,340 simulated samples and benchmarked on 42,588, at typical noise it cut the median coordinate error from 0.244 to 0.100 angstrom and raised atom recovery from 93% to 99%, elements called right 99.5% of the time.

Why it matters: Electron dose is what has kept atom-by-atom tomography to materials that survive the beam, which leaves out most of what people want mapped. The gain here is in post-processing rather than in the microscope, so a tilt series already sitting on disk can be re-read: thinned to a sixth of its dose, a published Pd@Pt series matched the full-dose conventional reconstruction on peak sharpness and repeatability.

Evidence and limits: No new experimental data were taken for this paper: the one demonstration on real data thins a published series, halving its projections too. Every other number is simulated, and the claim that this reaches beam-sensitive materials such as perovskites rests on simulation alone. Peer reviewed.

By Yao Zhang, Lanyi Cao, Zhen Sun, Jihan Zhou

npj Computational Materials ↗

Eleven ways of drawing cell boundaries in spatial transcriptomics are benchmarked side by side: none wins across tissues, and the choice changes which cell types and which cell-to-cell signals come out

What happened: A KAUST and Karolinska team ran image-based, transcript-based and multimodal segmenters, from Watershed to Cellpose, Baysor and three versions of Segment Anything, over 15 datasets from 5 platforms and 12 human and mouse tissues. On their overall score Segment Anything led at 0.58 and Watershed came last at 0.27, but count how many cells each found and SCS leads instead; the ranking also reorders by dataset: SAM did well where cells look distinct, SCS where they look alike.

Why it matters: Segmentation is the step every spatial result stands on, because it decides which transcript belongs to which cell. This benchmark shows the choice carries all the way through to cell-type proportions, how much signal bleeds between neighbours, and inferred ligand and receptor pairs. So a published spatial finding depends on a step with no standard, and the pipeline released here is an attempt to make the comparison repeatable.

Evidence and limits: There is no true cell boundary to score against, so the metrics are biological proxies: expression purity, marker genes, cell-type proportions against a reference. The authors say platform design, image quality and gene panels cannot be fully separated from the algorithms, and that their gene-set sensitivity test ran on one dataset only. Two of the 11, Swin-S and Cascade Mask R-CNN, were left out of the scored comparison. Peer reviewed.

By Xabier Martínez-de-Morentin, David Gomez-Cabrero, Jesper Tegner

Nature Methods ↗

Zhichong Pharma raises an A1 round of tens of millions of yuan to design pet drugs with generative AI

What happened: Tianhui Capital led the round; Index Capital advised. The Suzhou company designs small and large molecules for pets with its own models and says it has six or more programmes in anti-infectives, chronic disease and ageing. The money goes to clinical work on its lead programmes, its AI design platform and new programmes. Founder and CEO Wenjuan Wei and Dan Zhao, a partner at Tianhui, spoke on the record. Its 2023 angel round was led by Legend Star.

Why it matters: Wei's argument is that AI drug design is held back by the cost of testing, not by the models, and that pet medicine shortens the gap: a designed molecule can be tested in the animal it is meant for, much sooner than a human drug reaches a patient. If that holds, veterinary drugs are a place where design and real-world results can feed each other quickly.

Evidence and limits: The success rate of 30-50% from first trial to approval in pets is the company's estimate, and the report shows no designed molecule or result. The investor says several programmes are in Phase II, without naming them. The amount is given only as tens of millions of yuan.

VCBeat ↗

Kevin Weil, OpenAI's former head of science, launches Warp Sciences with $215M led by Lightspeed, to build a US chemistry lab it plans to automate

What happened: Lightspeed led; Premji Invest, Mayfield, IVP, Lux, Conviction, Menlo Ventures and 12 other firms joined; angels include OpenAI's chief research officer Mark Chen and its CFO Sarah Friar. The South San Francisco company is a contract research organisation: it will make variations of a lead molecule for drug hunters, with chemists guiding the work. Its co-founders are CEO Kevin Weil, chief scientific officer Sol Reisberg (medicinal chemistry, Terremoto Biosciences), CTO Manohar Paluri (Meta Superintelligence Labs, a founding member of FAIR) and COO DJ Patil, the first US chief data scientist.

Why it matters: Weil's case is that AI has sped up software and mathematics but not chemistry, because chemistry moves only when someone makes a compound and tests it. A lab that sells that work to drugmakers also produces the experimental data better models need, and Warp says it will have no drugs of its own. The other half of the pitch is location: the release cites a 2024 industry survey in which 74% of companies had Chinese contracts for preclinical and clinical work, and the BIOSECURE Act signed at the end of 2025.

Evidence and limits: The round is the company's own announcement, which names no stage. The $865M post-money valuation comes from press reports citing the company and Weil, not from the release. Nothing is automated yet on the public record: the release describes labs being built and a first service guided by chemists, and the site names no customer, only a small number of design partners.

Business Wire ↗

DeepMind maps the world's forests by type at 10 metres, as a baseline for the EU's deforestation rules

What happened: Google DeepMind and Google Research, with the World Resources Institute and IIASA, released Forest Typology 2020, which labels every 10-metre patch of land as one of six types, from primary forest to plantation, tree crops and other land. Built on AlphaEarth Foundations embeddings, it is 90.2% right overall against 8,190 expert-labelled sites, and is open on Earth Engine.

Why it matters: The EU rule turns on what a plot was in 2020, not just whether it had trees, and a tree-cover map cannot tell a natural forest from one logged and replanted as plantation. This map makes that distinction.

Evidence and limits: The 90.2% is carried by the large other-land class; per class, F1 runs from 82.9% for primary forest down to 58.2% for planted forest. Accuracy was checked on the Geo-Wiki platform of IIASA, a co-developer.

By Maxim Neumann, Anton Raichuk

Google DeepMind ↗

Microsoft's MAI-DxO, a panel of AI agents that orders tests and revises its diagnosis, is published in Science: 83% on hard NEJM cases against 36% for generalist doctors

What happened: Harsha Nori, Eric Horvitz and colleagues at Microsoft AI built a benchmark where a case starts from a short presentation and the diagnostician must ask questions and order tests, each with a cost, before naming a diagnosis. Their orchestrator, MAI-DxO, has language-model agents play a panel of doctors. It was right on 83.2% of New England Journal of Medicine clinicopathological cases and 80.3% of MIMIC-IV emergency admissions; generalist physicians scored 36.1% and 46.8%. Mustafa Suleyman, Microsoft AI's CEO and a co-author, called it a step toward medical superintelligence.

Why it matters: The benchmark, first posted as a preprint in June 2025 and now peer reviewed, tests diagnosis the way a doctor works: not picking an answer from a full case write-up, but deciding what to ask and which tests are worth paying for. Scoring cost beside accuracy lets a system be judged on whether it orders fewer tests, not only on whether it gets the answer. The Science version adds emergency-department cases and newer models.

Evidence and limits: The cases are published records run in simulation; no patient was seen. The doctors worked alone on cases usually handled by specialists, who were not compared. TechCrunch reports much of the gain comes from the underlying model: GPT-5 alone scored 78.9% on the hard cases, and on emergency cases the orchestrator added little.

By Harsha Nori, Eric Horvitz

Science ↗

Hugging Face releases Carbon-X, an open 14B model that answers questions about DNA in plain English and scores close to GPT-6.1 Sol on five DNA benchmarks

What happened: Carbon-X, built by Hugging Face with Zhongguancun Academy and TIGEM in Naples, starts from Qwen3-14B, is trained on 302 billion more tokens (55% of them raw DNA), then tuned to answer questions about sequences pasted into a chat. On five DNA benchmarks it averages 66.7%, against 67.5% for GPT-6.1 Sol and 60.9% for Opus 5.5, and leads every model tested on coding-variant effects (74.9%) and next-base prediction. The weights are out under Apache 2.0 and run on one 80 GB GPU.

Why it matters: DNA models usually output scores a scientist has to interpret, while a chat model may explain what a gene does yet struggle to judge a change in its sequence. Carbon-X puts both in one open model a lab can run on its own hardware, so unpublished or patient sequences need not go to an outside API. The team estimates that scoring ClinVar's 2.4 million variants of uncertain significance would cost about $300 with Carbon-X, against $32,000 to $4 million with the frontier models it tested.

Evidence and limits: Every score is the team's own, and two of the five benchmarks (FrontierVEP and NextBase) are ones it built. Nothing was measured in a lab or a clinic, and the team says the model is not clinically validated. Frontier models still lead on insertions and deletions and on single-base variants in long sequences, GPT-6.1 Sol also on sequence-feature questions, and Carbon-X can miscount bases or misplace coordinates in long sequences.

By Loubna Ben Allal, Diego di Bernardo

Hugging Face ↗

Reflector Bio comes out of stealth with a model that predicts what a compound does to living cells, built by Yuge Ji in Fabian Theis's lab

What happened: The New York company was founded by Yuge Ji, who built drug discovery models at Flagship Pioneering's Cellarity and developed the model as a PhD student in Fabian Theis's lab. Rather than predicting how a molecule binds to a protein, as structure tools such as AlphaFold and Boltz do, it predicts what happens in cells: whether a compound kills cancer cells or is toxic. The release names one partner, KiraGen Bio, which uses the model to rank gene-edit combinations for a glioblastoma cell therapy, and announces no funding.

Why it matters: Most AI drug design scores how a molecule fits one protein, while the failures that sink candidates, such as off-target effects and toxicity, show up later in cells and animals. A model trained on millions of past cell experiments aims to flag those before synthesis, and to make phenotypic screening, finding drugs by what they do to cells, cheap enough to run widely; the company says money, time and lab capacity are what kept it from scaling.

Evidence and limits: No round, investors or valuation were disclosed. The release's 80% hit rate is four of five compounds tested, from the founder's own preprint, and its line that top-20 drugmakers have used the platform names none of them.

Reflector Bio ↗

Scinetics reports ScienceRSI, where small expert models' verified gains are written into a target model, and opens an 8B science-reasoning checkpoint

What happened: The company's research note and preprint set out a four-step cycle: train compact experts on separate skills, break each answer into checkable requirements and accept an expert's contribution only where it beats the current one, write the accepted parts into the target model, then specialise again from it. In the 4B and 8B settings it ranks first among the methods compared on all five scientific benchmarks, scientific reasoning at 55.0% against GRPO's 53.0%. With 8B experts and a Qwen3.5-27B target, all seven benchmarks improve, the mean from 87.3% to 94.0%.

Why it matters: Most science models are trained once and then stand still, and a lab that wants a new skill in one trains a new model. The claim here is that a smaller model's strengths can be moved into a larger one, which the 8B-to-27B run is the test of, and that the filtering is what makes it work: without the verification step the same supervision drops scientific reasoning from 55.0% to 50.6%, and scattering it at random costs 6.3 and 12.1 points. The open 8B checkpoint lets someone outside the company check what the recipe produced.

Evidence and limits: Benchmark scores only, all of them the company's own, scored in-house and not peer-reviewed. The note says its own report does not show that repeated cycles keep accumulating gains, and the 27B run also changes model generation, which it reports separately; the model card says the open checkpoint renames and republishes an existing one rather than a fresh training run. The rankings are first among the methods compared, not against the field.

By Xun Xu, Zaixi Zhang

+1Scinetics ↗

A model that learns equivariance from data instead of building it in matches the equivariant reference models on molecular dipoles and NMR shielding tensors

What happened: Michele Ceriotti's group at EPFL applied the Point-Edge Transformer, which drops explicit O(3) algebra for edge-to-edge attention, to molecular dipoles and polarizabilities, NMR chemical shielding tensors and auxiliary-basis expansions of the electron density. A bigger backbone improved accuracy and equivariance error together. It matches or improves on the released models at lower inference cost, the density only when trained on a better-posed target.

Why it matters: Strictly equivariant networks pay for their guarantee in tensor products that grow steeply with angular order, and can fail to represent a target if truncated. Targets like shielding tensors and basis expansions are where that bites. Learning the symmetry instead removes the trade-off, if approximate equivariance is good enough.

Evidence and limits: All computed, by the authors. Equivariance here is approximate rather than guaranteed, and the authors say only that it affects most observables little, not all. Electron density is the weakest case: its equivariance error grows with angular order, and above order two it falls with backbone size no faster than the symmetrized error does. A preprint.

By Joseph W. Abbott, Michele Ceriotti

arXiv 2610.31183 ↗

Independent DFT databases disagree by more than the gap between the top universal potentials, and three reported model failures shrink under the right control

What happened: Gus Hart at Brigham Young University and Jacob Pursley at the DOE's Kansas City National Security Campus tested 14 universal machine-learned potentials on 1.45 million ordered intermetallics against AFLOW, a database none of them trained on. For half the structures AFLOW, Alexandria and OQMD differ by under 6 to 8 meV per atom, but a minority differ far more, raising the average to 16 to 30. Re-referenced, the best potential agrees with AFLOW as closely as Alexandria does.

Why it matters: Leaderboards rank these potentials by formation-energy error against one database, as if it were ground truth. The disagreement between independent databases sets a floor under any such number, and the top models now sit at it. Screening out broken elemental references aligns the energy and stability rankings, and the leader's 7 meV per atom margin shrinks to 0.4 when both are scored at a common geometry.

Evidence and limits: All computed: this compares databases and models, with no new measurement. Intermetallics only, chosen as a region where DFT is relatively accurate. A preprint.

By Gus L. W. Hart, Jacob N. Pursley

arXiv 2610.30641 ↗

Whether AI weather models beat the physics model on extremes depends on which metric you pick: the AI models miss extremes, the physics model raises false alarms, and each metric punishes one of those

What happened: Statisticians at Karlsruhe and Marburg put Pangu-Weather, GraphCast and Aurora against ECMWF's HRES under one experimental design. HRES came out ahead when scoring was restricted to events that actually happened; the AI models came out ahead under weighted scoring functions. A contingency table shows why: the AI models forecast extremes less often than they occur, so misses dominate their scores, while HRES forecasts them more often than the AI models do, so false alarms dominate its.

Why it matters: Published studies disagree about AI models on extremes, and this says the disagreement is largely in the protocols rather than in the models. The decomposition puts the score gaps down to calibration, not discrimination: every model tells an extreme from a normal day about as well, Pangu-Weather least of them, and the table shows the AI models are simply too conservative about saying so. That is a fixable problem, and a different one from not seeing the event.

Evidence and limits: All computed, against the analysis that initialised all four models, which the authors say slightly favours HRES; station recordings would test it. One physics model and three AI models, on the variables and lead times chosen here. A workshop paper at NeurIPS 2026, so shorter and less reviewed than a journal article.

By Tobias Biegert, Sam Allen, Zhongwei Zhang, Sebastian Lerch

↳ An AI model beating a physics system on general skill, which this qualifies for extremes GraphCast beats a leading physics-based weather system
↳ One of the three AI models scored here Pangu-Weather challenges conventional global forecasting
arXiv 2610.31237 ↗

A deep latent-variable model with do-calculus inside it picks out which regulators may drive a cell-state change and which merely travel with it

What happened: Chengming Zhang and Luonan Chen, with Kazuyuki Aihara at the University of Tokyo, split the latent space of a hierarchical model into causal and spurious factors and apply do-calculus to the causal half, then recurse to rebuild the regulatory layers. On synthetic data, stem-cell differentiation, a CRISPR activation screen of 31 single and 26 paired conditions with some held out, a type 2 diabetes multiome and gut microbiome data, it beat the methods compared on causal triggers in most settings.

Why it matters: Most regulatory networks read off single-cell data are built from correlation, so a gene that moves with a state change is indistinguishable from one that drives it, and that is the difference between a target worth perturbing and one not worth the bench time. Encoding the intervention itself, rather than the association, is a different route to the problem, and the output is a ranked list of candidates to test.

Evidence and limits: All computed on public datasets, with no new experiment. The authors say the inferred triggers may still contain spurious biological signal, that the in silico perturbations are a qualitative read of direction rather than a predicted magnitude, and that simple additive baselines still do well on part of their own perturbation benchmark. Its results also depend on the regulatory hierarchy assumed. Peer reviewed.

By Chengming Zhang, Deyu Cai, Kazuyuki Aihara, Luonan Chen

Nature Methods ↗

Designing an RNA to bind a protein, with no binding site given, recovers the native complex on 16% of its authors' benchmark

What happened: A Nanjing University, CUHK and NUS team split the problem in two: generate an RNA shape in a pretrained structural latent space, then predict the contacts that place it against the protein, rather than generating shape and pose together. On 124 protein-RNA complexes held out by date, it leads ODesign, RFDpoly, RNAFlow and NACraft on complex recovery, with DockQ 0.131 against 0.116 for the next best. Twenty of the 124 clear DockQ 0.23.

Why it matters: RNA that binds a chosen protein is a route to reagents and to drugs, and unlike protein binder design it has stayed out of reach, partly because so few protein-RNA structures have been solved. What this paper pins down is where the state of the art stands when the binding site is withheld: five methods, and the best of them recovers the native pose on one target in six.

Evidence and limits: All computed, no synthesis and no binding measurement, and the authors say structural recovery establishes neither affinity nor activity. The headline ranking uses the native interface after generation to pick which of RiboBridge's own pockets is scored, so it is not a blind result. RiboBridge also clashes more than two of the baselines and does not lead on sequence recovery. A preprint.

By Zhou Zhang, Hanqun Cao, Tianfan Fu

arXiv 2610.30668 ↗

Full Phase 3 data for Moderna and Merck's individualized melanoma vaccine: risk of recurrence or death cut 42% (HR 0.58), with no difference in the first six months

What happened: In INTerpath-001, 1,137 patients with resected stage IIB-IV melanoma were randomised 2:1 to intismeran, an mRNA encoding up to 34 neoantigens chosen from each patient's tumour sequencing, plus KEYTRUDA, or to placebo plus KEYTRUDA. After a median 24.6 months, two-year recurrence-free survival was 82.2% against 70.0% (HR 0.58), and the risk of distant metastasis or death fell 38% (HR 0.62). The data go to ESMO 2026's Presidential Symposium and are accepted by NEJM.

Why it matters: Until now only the topline was public. The two arms part only after six months, once the course of up to nine vaccine doses is given: the hazard ratio is 0.99 in the first six months and 0.42 after, in a prespecified sensitivity analysis. That is the timing expected if the benefit comes from an immune response the vaccine builds against each patient's chosen neoantigens. Merck says it is now talking to regulators.

Evidence and limits: Merck and Moderna released these numbers ahead of the talk and the paper. Overall survival is immature: the release reports a 'favorable trend' and no number. The trial tests the whole product, so it cannot say how much the neoantigen selection adds over another way of choosing antigens. Grade 3-5 treatment-related events were 14.2% against 13.4%.

Merck ↗

A single protein-design model from Baker's lab and NVIDIA beats the best specialist tools on four design tasks, and its designs were made and measured in the lab

What happened: RFD4-Proteina, from the University of Washington Institute for Protein Design and NVIDIA (David Baker corresponding), designs proteins, DNA, RNA and enzymes in one shared latent space, using reasoning and guided search rather than a separate model per task. On AlphaFold3-refolded designs it reports a 10.6% pass rate for protein binders against BindCraft's 5.9% at 42 times the throughput, and higher rates than every method tested on small-molecule, enzyme-scaffold and DNA-binding tasks. In the lab, 158 of 188 designed TrkA binders bound below a micromole.

Why it matters: Protein design has used a different specialist tool for each job: backbones, binders, enzymes, DNA. RFD4-Proteina puts them in one model that also covers modified amino acids, sugars and nucleic acids, and still comes out ahead on all four. The part that matters is the wet lab: designs across many target classes were made and measured, including a designed enzyme that converted 79% of an intermediate in making the HIV drug lenacapavir, a de novo catalyst doing a real step of drug chemistry, further than designed enzymes had reached.

Evidence and limits: A preprint, not peer reviewed, and all the wet-lab work is the authors' own, so nothing is independent yet. In silico a 'pass' means an AlphaFold3 refold matches the target (a model checking a model), and the pass rates are low in absolute terms (3.5% for DNA binders). The binder and enzyme successes are counts from the authors' own assays, not an outside lab's, and the enzyme result is a single proof-of-concept.

By Nathaniel Corley, Kieran Didi, David Baker

RFD4-Proteina preprint ↗

Google's personal health agent hands health questions to three AI specialists; in Nature, experts rate it above one agent and above the three answering separately

What happened: A. Ali Heydari, Daniel McDuff, Xuhai Orson Xu and colleagues at Google Research built an orchestrator over three Gemini 2 agents: one writes and runs analysis code on Fitbit and blood-test data, one checks health knowledge against sources, one coaches. The data came from the WEAR-ME study of 1,165 people. Across 11 tasks and 1,350 hours of rating, 45 users put it first 46.7% of the time; three health experts scored its overall quality 72.8%, against 64.3% for the three agents answering separately and 54.4% for one agent.

Why it matters: Questions about your own wearable data need code and statistics, while coaching needs a different way of talking, and the authors found one model struggles to balance both. Splitting the work let each part be tested on its own: the data agent's analysis plans scored 75.6% against 53.7% for plain Gemini, and its code passed 75.5% of expert unit tests on the first try against 58.4%. The framework and its benchmark are open under Apache 2.0, so other groups can swap in their own models.

Evidence and limits: Everything was rated in conversation, not measured in health: the live users played study personas instead of asking about their own data, and no one tested whether behaviour changed. The data are Fitbit only, some scoring used model raters, and a response took 205 seconds and 6.5 model calls, against 36 seconds for one agent. The authors call it a research prototype, not a diagnostic tool.

By A. Ali Heydari, Xin Liu, Daniel McDuff, Xuhai Orson Xu

Nature ↗

Mirendil says one researcher working with AI agents pretrained Mirendil-Base, a coding model of 100B to 500B parameters, in 3.5 months for under $10M

What happened: Mirendil reports that one researcher built Mirendil-Base from an empty repository: agents wrote over 99% of the code, ran the experiments and diagnosed failures, while the researcher chose what to try and what to trust. It learned only from public code, web pages and datasets, with no distillation, and the cost covers all compute, the agents' tokens included. On seven code repositories published after training it scored 0.222 bits per byte (lower is better), behind Kimi-K3's 0.193 and ahead of GLM-5.3, DeepSeek-V4-Pro-Base and Nemotron-550B-Base.

Why it matters: Pretraining a competitive base model has taken a team of specialists in architecture, data and chips. If one person directing agents can do it, the scarce inputs become compute and judgment, and a group whose expertise is in its own science, such as a robotics lab or a hospital, could train a model on its own data. It is the first result from a company that raised on the pitch that labs using AI in biology or chemistry should not have to become AI labs.

Evidence and limits: Every number is Mirendil's own, in a blog post with no paper, no weights and no named researcher. The only score is how well the model predicts unseen code, not whether it solves coding tasks, and Mirendil notes that Kimi-K3 and GLM-5.3 were scored after post-training, which usually raises this loss slightly. The two larger models are still in training.

Mirendil ↗

Duke researchers gave an off-the-shelf language model a pipetting robot and a webcam, and it designed its own experiments when it found it was missing information

What happened: Jeonghyeon Kim and Philip A. Romero connected GPT-5.6 Terra to a standard Opentrons OT-2 pipetting robot and a webcam through PEARL, five model roles sharing one record of the experiment. Given only a goal, it refused an impossible instruction in all ten runs, read from the colours that a human had turned the plate 180 degrees mid-run, and in seven of ten diluted dyes to see their colour first. Asked to characterise an enzyme assay, it set concentrations and timings, discarded a spiked well, and repeated runs missing early readings.

Why it matters: Lab automation runs the procedure it was given, and a moved plate or a saturated reading breaks it unless someone wrote a check for that case first. The paper's own comparison locates the behaviour: in a plain tool loop none of the 80 execution runs passed, one agent keeping a persistent record of the experiment passed 60%, and the five-role version passed all 80. So the judgment is mostly the general model's and the scaffolding buys reliability, which is what would let a lab with an ordinary liquid handler try this rather than build a platform.

Evidence and limits: Eight scenarios on one bench, run by the authors: colour mixing and one horseradish peroxidase assay, whose kinetic constants matched their own human-run reference and previously reported values, not an outside lab's. The scoring of planning, adaptation and execution is theirs, on their own rubric, and every perturbation was one they introduced, so nothing tests what a working lab meets unplanned. Colour was read off a webcam calibrated against a plate reader. It is a preprint.

By Jeonghyeon Kim, Philip A. Romero

↳ Coscientist, the earlier autonomous chemistry run AI co-scientist reaches peer-reviewed publication
bioRxiv 2026.10.20.760214 ↗

A KAUST and Bestzyme team redesigned a laundry protease with reinforcement learning, and three of their variants cleaned soiled cloth better than the commercial enzyme in a standard wash test

What happened: AlphaVariant pairs a sequence generator trained on related natural proteins with activity predictors retrained after each round of results. On savinase, a detergent protease, two rounds produced libraries in which 75.4% and then 83.8% of the variants tested beat wild type, as the positions it could change went from 25 to 67; its best variant was 7.1 times more active than wild type on a synthetic substrate. A third round also scored heat tolerance and patent distance, and of 32 variants built, three beat the commercial protease Uno 100 L.

Why it matters: Directed evolution gets its gains mostly one position at a time, because the combinations explode and the measured data is far too sparse to fit a model over them. Here the useful variants carry changes at eight to sixteen positions at once, and the final round needed only 32 measurements, which is the scale at which a design method is worth a company's screening budget rather than a benchmark table. Putting patent distance in the reward is the unusual part: freedom to sell was optimised alongside performance, and it is a constraint any enzyme has to satisfy.

Evidence and limits: Every assay and the wash test were run by the authors with the industrial partner Bestzyme, which has filed a patent application on the variants; no outside lab has tested them. The wash test is a Chinese standard method on one soiled-cloth type, not a product trial. The 7.1-fold figure is kinetic fitting on a peptide substrate, and round three used casein. On the six public landscapes the clear wins were the three scored by a surrogate. Preprint, CC BY-NC-ND.

By Xiaopeng Xu, Jie Wang, Xin Gao

bioRxiv 2026.10.19.760152 ↗

Xaira's X-Scientist agents picked genes to perturb in liver cells, and 7.1% of its picks reversed the TGF-beta signal against 6.9% for its own scientists and 0.9% at random

What happened: Bo Wang, Ci Chu and colleagues describe X-Scientist on the company's blog: a lead agent plans and checks the work of worker agents that call bioinformatics tools and Xaira's own models. It nominated 381 genetic perturbations to undo what TGF-beta does to HepG2 liver cells; the company also tested 321 its own scientists picked and 433 drawn at random, measured all of them by Perturb-seq, and counted a hit at three standard deviations back toward untreated cells. Nominating took 20 minutes against more than three hours by hand.

Why it matters: TGF-beta drives scarring in chronic liver disease, and which genes to perturb against it is the kind of choice a biologist spends a morning on. The measurement here is of the model's picks, not of the model's own score: every nomination was made, perturbed and read out in cells. Three of its hits outside the known TGF-beta pathway beat the median of the ones inside it, and none were in the scientists' list, which is what the loop is for, since a list of known pathway genes is one a scientist already has.

Evidence and limits: A company blog post, no paper and no peer review, and Xaira both chose and scored the comparison. One cell line, one exposure out of the twelve it ran, and the 7.1% against 6.9% gap is well inside what 381 and 321 perturbations can resolve. The benchmark scores beside it compare harnesses on the same models, not biology. Nothing has gone back into the models yet.

By Bo Wang, Ci Chu

Xaira Therapeutics blog ↗

One LoRA adapter per space group, not per compound, cuts the cost of high-throughput thermal conductivity by a projected five to seven times

What happened: Alexander Shapeev's group at Skoltech fine-tuned the MatterSim 1M potential with low-rank adaptation on a small set of compounds sharing one crystal symmetry, then solved the Boltzmann transport equation for lattice thermal conductivity. On half-Heuslers, space group 225 and spinels, the adapted potential came two to three times closer to the reference than the unmodified one, matched per-compound fine-tuning, and cut fine-tuning time 1.5 to 2 times on the 28 compounds actually run.

Why it matters: Universal potentials soften the energy surface, which spoils the derivatives thermal conductivity depends on, so people fine-tune per compound and pay for it. Tying the adapter to a space group instead spreads that cost over every compound sharing the symmetry.

Evidence and limits: All computed. The reference is other potentials, moment tensor and polyMLP, not measurement. The five-to-seven speedup is extrapolated from 28 compounds; the paper's own conclusion says five to six. Three space groups, and the paper does not show transfer across symmetry classes. A preprint.

By Rustam Arabov, Konstantin Sozykin, Nikita Rybin, Alexander Shapeev

arXiv 2610.29634 ↗

Astellas signs AI Proteins to design miniprotein drugs against its targets, in a deal worth more than $400M with milestones

What happened: AI Proteins will design and optimise miniproteins from scratch against several targets Astellas picks. Astellas, through its affiliate Astellas Innovation Management, takes an exclusive worldwide licence to any candidate and runs development, regulatory work and sales. Upfront and milestone payments come to more than $400M, plus royalties. Chris Bahl, the Boston company's founder and CEO, and Morten Sogaard of the Astellas Innovation Lab spoke for the deal.

Why it matters: This is AI Proteins' second large-pharma deal, after Bristol Myers Squibb's in late 2024, also valued at up to $400M. Miniproteins are small proteins built from scratch rather than taken from nature. Bristol Myers Squibb took an option on a licence; Astellas takes the exclusive licence outright, so this time the designs are bought as future drugs from the start.

Evidence and limits: The release does not break out the upfront payment or say how many targets are involved, and no designed molecule from the deal is shown. One trade report described the $400M as upfront; the release counts it as upfront and milestones together.

Pharmaceutical Executive ↗

Pinal, a model that writes a protein from a description in words, is published in Nature with four kinds of protein that worked in the lab

What happened: Fengyuan Dai, Fajie Yuan and colleagues at Westlake University trained a 16-billion-parameter model on 1.7 billion protein-text pairs: a description of the function wanted goes in, a sequence comes out, with less hand-written structural specification. Four tasks were run, a fluorescent protein, a PET hydrolase, an alcohol dehydrogenase and a metabolic H-protein, and each gave the intended function, with catalysis measured for both enzymes. In a reconstituted CO2-fixing reaction a designed H-protein raised product yield 1.7-fold over the natural E. coli one.

Why it matters: Protein design normally starts from a natural protein to optimise, or asks the designer to restate the goal as geometry and sequence rules a model can take. Here the goal is a sentence, and what came out of it catalysed reactions rather than only folding as predicted. The H-protein is the sharper part: a designed carrier protein beat the natural one in a reconstituted CO2-fixation reaction, with no rounds of experimental optimisation in between.

Evidence and limits: The per-task numbers are in the extended data and they are small: 94 PET hydrolase designs assayed out of 2,416 filtered gave one hit, 8 alcohol dehydrogenases tested gave 5, and 20 H-proteins picked from about 1,000 gave 5 active. All the wet-lab work is the authors' own. The inference code is Apache 2.0 and the weights repository states no licence; the full training corpus was withheld for biosecurity and given only to the reviewers.

By Fengyuan Dai, Fajie Yuan

↳ The same interface, ten days earlier and not peer reviewed, where the designs bound but nothing showed they did anything Prompteina designs all-atom protein structures from written prompts, and nine of its GM2A designs bind in the lab, the strongest at 107 nM
Nature ↗

Westlake University's Pinal turns a sentence describing the job into candidate proteins, and candidates for four different jobs worked in the lab

What happened: Fajie Yuan's group at Westlake University, with HKUST (Guangzhou), the Shenzhen Institute of Synthetic Biology and Zelixir, trained Pinal, a 16-billion-parameter model, on 1.7 billion machine-written pairs of a protein and a description. It drafts a structure from the words, then a sequence to fit it. Designs for a fluorescent protein, a PET-degrading enzyme, an alcohol dehydrogenase and an H-protein each showed the function asked for; in a CO2-fixing pathway the designed H-protein gave 1.7 times the product of E. coli's own, with no lab optimisation.

Why it matters: Design models typically start from a natural protein to improve, or need a person to turn the goal into shape and sequence constraints first. Pinal takes the goal as a sentence, which is a different interface: the biologist says what the protein should do and gets candidates to test. The weights are on Hugging Face and the code is Apache-2.0, so the claim can be tried by anyone.

Evidence and limits: Each hit came out of a funnel the headline hides: about 151 designs assayed across the four functions, out of thousands generated, with the PET-degrading enzyme leaving one standout among 94 tested. The measurements are the authors' own, and the training corpus is withheld over dual-use risk. Fajie Yuan told Science and Technology Daily that language-driven protein design is still at the proof-of-concept stage, with finer instructions, such as setting a fluorescent protein's emission band, open for the field.

By Fengyuan Dai, Shiyang You, Tong Si, Fajie Yuan

+1Nature ↗

Eka Robotics, founded by MIT's Pulkit Agrawal and ex-DeepMind Tuomas Haarnoja, raises a $150M Series A for robots that grip by feel

What happened: a16z and F-Prime led the round; seed investors Obvious Ventures and E14 Fund returned, with MFV Partners, Bison Ventures, Glasswing Ventures, Samsung Next and unnamed Fortune 500 strategics. TechCrunch reports a $1.45B post-money valuation. Pulkit Agrawal runs MIT CSAIL's Improbable AI Lab; Tuomas Haarnoja co-created the Soft Actor-Critic algorithm and trained humanoid behaviours at Google DeepMind. Eka's vision-force-action model is trained by reinforcement learning in simulation.

Why it matters: Its model uses the forces a gripper feels on contact, not only what a camera sees, to adjust a slipping grasp or a part that resists insertion. That is the skill a lab robot needs to handle vials, pipettes and samples it has not seen before. Eka itself aims at general manipulation, from packing produce to assembling server racks, not at labs.

Evidence and limits: The 1,500 picks an hour (against about 600 for a person) and the transfer from simulation to new objects are the company's and a16z's own claims, with no outside test; the valuation is TechCrunch's report, not the company's.

+2The AI Insider ↗

Bob McGrew's Arda raises a $160M Series A at a $1.5B valuation for AI that turns product designs into assembly lines

What happened: Arda, started in 2025 by Bob McGrew, OpenAI's former chief research officer, launched on 20 October. McGrew announced a $160M Series A at a $1.5B valuation; CNBC, citing the company, gives $230M raised in all, led by Altimeter Capital, Accel and Khosla Ventures. Augustus Odena, a co-founder of Adept, is co-founder and chief AI officer. Anduril has been its design partner for a year.

Why it matters: Its software reads CAD files, PDFs and product requirements and produces the build plan and work instructions for a manual assembly line, updating them when the design changes; next it plans lines that robots can be reconfigured on as quickly as people. That is engineering, not discovery, but it automates the same step a self-driving lab needs: turning a design into physical work.

Evidence and limits: The $160M and $1.5B are McGrew's own figures; how CNBC's $230M splits across earlier rounds, and the other investors, were not read at source. No customer result is public beyond the company's word that it runs on lines at a large US manufacturer.

+2Bob McGrew on X ↗

Thore Graepel's Metis Reasoning launches with four founders, a 12-person team and a white paper

What happened: Metis Reasoning came out of stealth on 20 October with a team of 12. The founders are Thore Graepel, Piers Ingram, Michael Warren and David Berman; the white paper, bylined Graepel, Berman, Warren and Ingram, gives the company as London, Singapore and Los Angeles. The paper proposes an AlphaGo-inspired system that keeps an explicit record of what it knows and accepts a claim only when evidence warrants it. Ingram told Tech.eu the company has been funded more than adequately to date, without commenting on the reported raise.

Why it matters: In September the record had only Bloomberg's report of fundraising talks. Now the company names its founders and sets out its approach in its own words: reasoning modelled on the scientific method, with auditable traces, aimed at science, engineering and robotics, where an answer has to be checkable.

Evidence and limits: A position paper and a launch, not a result: no model, benchmark or customer is public, and the 'encouraging' reasoning results Ingram mentions are not shown. The raise is still unconfirmed and no investor is named.

↳ Related commentary The launch this paper came with
Metis Reasoning ↗

OpenAI acquires Orchestra Bio, whose agents track what a drug programme owes and when, and folds its team into Rosalind with no price disclosed

What happened: OpenAI says it has acquired Orchestra Bio, a platform for coordinating drug development, and is bringing its team and technology into Rosalind. Its own example: a failed manufacturing batch can delay the start of a clinical trial, and Orchestra's agents work out which activities and timelines that hits, gather the relevant information and compare ways to respond, after which scientists and programme leaders decide. The same page names Novo Nordisk and Moderna as Rosalind partners.

Why it matters: Rosalind has been a model and a workbench; this adds the layer that tracks what a programme owes and when. OpenAI puts the case in its own numbers: roughly 10 to 15 years on average from target discovery to approval in the United States, with teams coordinating across internal departments and outside partners on disconnected systems. So what is being sold here is coordination rather than prediction, and the division of labour is stated outright: agents monitor and track, people decide.

Evidence and limits: No price, and OpenAI's page names nobody from Orchestra. The reported funding, about $20 million in total, reaches here through Decrypt citing Caplight rather than from the company, and the seed round's size is not given. Neither company says how many customers Orchestra has, what happens to existing contracts, or when the agents reach Rosalind. Orchestra Bio is not Orchestra BioMed, the unrelated Nasdaq device maker.

OpenAI ↗

Radical Numerics reports that phage variants its Omnii-1 model designed were given to one patient with a drug-resistant infection, under compassionate use

What happened: Aniketh Iyengar, Benjamin Siranosian and colleagues report it on the company's blog. Omnii-1 rewrote the DNA for gp17, the tail-fibre protein the T7 phage uses to recognise E. coli. At 11 to 15 amino-acid changes from the natural protein, 69.9% of its designs were recovered after assembly against 4.8% of random controls, and 2,161 of 6,694 variants with measurable activity were enriched above the natural phage. A cocktail containing its designs cleared one patient's resistant bacteria in a dish, then was given to that patient.

Why it matters: A model's design has gone into a person's treatment, not only into a dish: the company says this is the first clinical use of AI-generated phages, under an authorised, physician-led compassionate-use pathway. What the model wrote is one region of a known T7 genome, not a genome. It also ranks which designs to test against a given bacterial strain (on the hardest of three library strains, 24% of its top 100 picks beat the activity threshold against 4.5% of the library), and that ranking is the step a therapy matched to one patient has to get right.

Evidence and limits: A company blog post, no paper and no peer review, and every measurement is the company's own. One patient: the company discloses no clinical course and no outcome, citing privacy, and says a single patient cannot establish safety or efficacy, so nothing here tests whether the treatment worked. "World's first" is the company's own claim. Recovery is a sequencing proxy rather than a plaque count, and activity is enrichment measured against the natural phage.

By Aniketh Iyengar, Benjamin Siranosian, Arpan Sarkar, Avery Noonan

Radical Numerics ↗

Anthropic has Claude run a protein-binder design campaign against scorpion toxins; outside labs find 17 of 211 designs bind

What happened: The team chose five toxins; from one prompt and four follow-ups, an internal research model then worked mostly on its own for 64 hours, picking the sites to aim at and generating 318,484 candidates, 211 of which were made. Adaptyv Bio tested all of them for binding, Twist Bioscience 210 against four toxins. Seventeen met Anthropic's criteria, 15 of them at both labs. The tightest, against the Mexican toxin Cn2, was single-digit nanomolar. All 211 and their data are released.

Why it matters: This is the company's earlier binder work pushed at a target nobody has money to work on (antivenom for a neglected disease), and the loop is what to look at: the model set its own quality thresholds, decided how much to lean on each design tool the prompt offered, and sent sequences to a vendor, with people steering four times. Among designs aimed at a single toxin, 11 of 60 bound, which is what an ordinary protein-design campaign gets, so the claim is about who ran the campaign, not about a better method.

Evidence and limits: Binding is all that was measured, against toxin proteins grown in the lab, not taken from venom; nothing was tested in cells or in an animal, and Anthropic says it has not made an antivenom. None of the 151 designs aimed at more than one toxin met the bar against more than one. The criteria were set after the data came in, and no design baseline was run, so the model's own contribution cannot be separated from its tools'.

By Nathaniel Horwitz, Amir Shanehsazzadeh

↳ The earlier Claude binder campaign this one extends Anthropic reports Claude-designed protein binders working in the lab
Anthropic ↗

An agent framework simulates 14 nickel grain boundaries, then shows that leaving the boundary's own defects out of the cell moves the predicted sliding strength either way

What happened: Yazhuo Liu, Ting Zhu and colleagues at Georgia Tech, the University of Osaka and USC build GBClaw: an orchestrator and five agents, routed to two GPT-5.6 models, that set up atomistic shear simulations in LAMMPS and analyse them. Across 14 asymmetric tilt boundaries in nickel the strength at which sliding starts ran from 14 megapascals to 9.3 gigapascals. Four were rebuilt with arrays of secondary misfit dislocations, the defects a real boundary has: one fell from 1,074 to 530 MPa, two by four orders of magnitude, one rose.

Why it matters: Most interfaces inside a real metal are these mismatched boundaries, and they stay understudied because their structure is hard to pin down in both experiment and simulation. What the sweep shows is about the models, not the agent: if the predicted strength depends this much on whether the boundary's own defect structure sits in the cell, then screening boundaries on simplified cells (with a first-principles or machine-learned potential, at real cost) is reading the cell as much as the material.

Evidence and limits: All of it is simulation with one empirical nickel potential: nothing was made or measured, and the authors call their numbers athermal instability thresholds for the cells they modelled, not universal upper bounds. The cells are small and periodic, which suppresses the long-range defect interactions a wide boundary has, and the energy paths carry no temperature. The {111}/{110} anomaly was traced only after a researcher directed the follow-up runs.

By Yazhuo Liu, Ting Zhu

arXiv 2610.28629 ↗

CrystalAR writes a crystal as one sequence, from space group down to atom positions, and nearly matches the best structure-prediction baselines on MP-20

What happened: A team from the National University of Singapore and Southern University of Science and Technology puts a crystal's whole description into one sequence for a single autoregressive model: space group, then which element sits on which symmetry site, then the cell, then positions. Each position is chosen coarse to fine, by repeatedly halving the region that site may occupy. Given composition and space group, one guess recovers 62.92% of MP-20 structures (CrystalFormer 29.62%, OMatG 63.75%) and 25.25% of the larger MPTS-52 structures, where its position error is also the lowest.

Why it matters: Generators that write symmetry sites out explicitly can explore new structural templates, but they have lagged at producing stable, accurate crystals. Here one model does both, and its own ablation shows why its structures come out valid: choosing positions in symmetry-aware coarse-to-fine steps gave 90.12% valid structures, against 68.16% for plain position bins and 41.64% for continuous coordinates. That representation is something other crystal generators can reuse.

Evidence and limits: All computed, by the authors. In the prediction test CrystalAR is given the space group with the composition, while generic baselines such as DiffCSP and FlowMM get the composition alone, as the paper's appendix notes. With 20 guesses it trails CrystalFlow, 74.55% against 78.34%. Stable new crystals stay rare: 0.9% of generated structures after pre-relaxation.

By Ziqiao Meng, Zhenkun Wang, Wee Sun Lee

arXiv 2610.27762 ↗

A screen of 2.8 million computed compounds for electrical conductivity finds none that beats copper, but several that rival aluminium on paper

What happened: Miguel Marques and Silvana Botti's group at Ruhr University Bochum ranked about 2.8 million near-stable compounds in the Alexandria database with two machine-learning models and a fitted formula, kept about 1,200, added about 12,800 compounds already computed, and narrowed the combined set to 52 for full electron-phonon transport calculations. Tested on elemental metals, those calculations land mostly within 30% of measured values. The best compounds, Be2IrPt, H3NaNi, LuIr and LiBePt2, come out at about 34 to 38 million S/m, near aluminium's measured 36.59.

Why it matters: Chip wiring and power lines need metals that conduct well, and conductivity is a property materials databases rarely compute because the full calculation is expensive. This shows a workable route: rank millions cheaply, then spend the full calculation on a few dozen. It also explains why silver, copper and gold stay ahead, and points to a mechanism: electrons from light elements can push a compound's high-scattering d-states below the Fermi level, as in LiBePt2.

Evidence and limits: The match with experiment is for elemental metals, not the new compounds, none of which was made or measured here. Even among elements, calcium comes out at 7.98 against a measured 28.99 million S/m. Spin-orbit coupling was left out; adding it cut Be2IrPt and LiBePt2 by 8% and 9%. Several leading candidates contain platinum, iridium or rhodium.

By Thalis H. B. da Silva, Silvana Botti, Miguel A. L. Marques

npj Computational Materials ↗

Scored by what a lab would actually discover, protein models' zero-shot accuracy explains under a fifth of the difference in what they find, and 50 to 100 measurements beat them

What happened: A Sydney, Columbia, BAAI and Tsinghua team re-scored 95 predictors over 217 ProteinGym assays and 2.47 million variants by what each would find under a matched budget, on two objectives: finding top variants, and ranking the landscape. Across 20 scores fitted to 20 measurements of the target assay, prior ranking ability explained under a fifth of the differences in what they recovered (r = 0.44). A plain additive model from measured single mutants then overtook them: at 50 to 100 measured singles for top variants, around 500 for ranking.

Why it matters: This changes what a protein-model leaderboard is for. A campaign's question is which variants to measure next, and the paper shows the quantity that answers it is not the one benchmarks report: a score that ranks a landscape well need not direct a budget well. The practical reading is that a model prior is worth most in the first few dozen measurements, after which the lab's own data wins, and that closed-loop design should be scored by what gets discovered at a given budget, not by correlation on a fixed dataset alone.

Evidence and limits: All retrospective, re-scoring measurements that already exist, with no new experiment and no closed loop run. Substitution landscapes only; the authors say insertions, deletions and de novo design would need their own controls and stated measurement costs. The crossings are additivity predicting double mutants from measured singles; on variants with three or more substitutions the models led instead. They come from deep mutational scans, where every variant is already measured, which is not a lab's candidate pool. A preprint.

By Wenze Ding, Haipeng Gong, Zhiyong Wang

+1bioRxiv ↗

Electric Plant comes out of stealth with an $11.2M seed round led by Onto Ventures and Climactic, to sell sensors and a model that read plants' electrical signals

What happened: Electric Plant was founded by Justin Mast, who built the online plant shop Bloomscape, and the neuroscientist Lee von Kraus. TechCrunch reported the seed round: Onto Ventures and Climactic led, with Ponderosa, Endeavor Catalyst, Ludlow, Michigan Rise, The Fund, Schox VC and Dug Song. Its sensors screw into a stem or trunk and send the plant's electrical signal to Bombadil, the company's model, which reads early signs of stress and what the plant needs, such as water. Mast told TechCrunch a sensor costs tens of dollars.

Why it matters: Growers judge what a plant needs from soil probes, handheld leaf meters or satellite images. Electric Plant wants to read the plant itself, all the time, from a cheap sensor, and has trained a model on that signal across more than a hundred species. The round backs a model of a living body signal taken from plants rather than people, aimed at farming, forestry and plant care.

Evidence and limits: The round is from TechCrunch's report, with Mast on record; the company's Business Wire release could not be opened, and no valuation was given. Mast's claim that the system can cut water use by 20% or more is his own, with no field data published, and he did not name customers.

TechCrunch ↗

Radical Numerics reports its Omnii-1 model scoring above AlphaGenome and Borzoi at telling which changes in non-coding DNA actually do something

What happened: Matthew Carter and colleagues post the numbers on the company's blog. On AlphaGenome's own panel of 21,948 test cases, each pairing a DNA change with a gene and a tissue, half of them changes statistics pinned as the cause and half it ruled out, Omnii-1 scores 0.810 against Borzoi's 0.705 and the 0.713 AlphaGenome's paper reports. On a splicing panel of 14,458 cases it scores 0.814 against 0.721 for Pangolin. It also predicts methylation, a chemical tag on DNA, one site at a time, agreeing with measurements at 0.879.

Why it matters: Most DNA changes tied to disease sit outside the stretches that code for proteins, and working out which of them does anything is the bottleneck. The earlier models read DNA alone. This one also reads lab measurements of how the DNA is packaged and used in a given tissue, and can take those measurements as an input rather than only predict them. Its lead over Borzoi grows the further the change sits from the gene, from 0.05 within 500 bases to 0.19 beyond 50,000.

Evidence and limits: Every score is the company's own, in a blog post with no paper and no peer review. It says it cannot run AlphaGenome itself, so those numbers are read out of the published paper rather than measured side by side, and AlphaGenome's higher supervised score on the same panel, 0.799, is not the one compared against. The labels are statistical inferences from population data, not variants tested in an experiment, and the model is behind a request form.

By Matthew Carter, Armin Thomas

Radical Numerics ↗

Radical Numerics and Aptamino run three rounds of lab-measured antibody design with Omnii-1, and two designs bind tighter than the test can read

What happened: Max Highsmith and colleagues report it on the company's blog. The campaign began with 1,620 designs from earlier pipelines, 150 of them with measured binding. Since mid-September, Omnii-1 rewrote positions in the best of those, ranked its own proposals, and Aptamino made and measured a selected set, three times over. The designs push out the measured trade-off between how tightly a single-domain antibody binds and how much of it a cell makes; two from the third round bind below the test's floor.

Why it matters: This is a loop where the model's own ranking decides what gets made, and each round's measurements go back into it. Antibody sequences were not a domain of this genome model's original pretraining; they came in afterwards, as public repertoires and the partner's own measured designs. What is being tested is whether a general biological model can be turned to one partner's narrow design problem. Ranked on the same 327 measured designs, what the model has learned predicts expression and potency a little better than protein-specific models, with a plain one-hot encoding of the sequence close behind on potency.

Evidence and limits: A company blog post, no paper and no peer review, and both sides report their own work. One target, single-domain antibodies, three rounds, with the target's identity and some measured properties held back by the partner. Two designs beating the test's floor is a limit of the test, not a measured strength; the antibody post gives no number for that floor, and 0.2 nM comes from the launch post. The gains over the other models sit inside overlapping confidence intervals.

By Max Highsmith, Michael Poli

Radical Numerics ↗

With Lawrence Livermore, Radical Numerics reports its biology model predicting which rare earth metal a protein prefers better than the other methods tested

What happened: Armin Thomas, Gautam Machiraju, Benjamin Siranosian and Christine Parthemore report it on the company's blog. Livermore measured how 609 natural proteins split their binding across the 15 rare earth metals, on a plate assay it built this year. Given two of the metals, Omnii-1 ranked proteins it had not seen by which one they favour, at a median rank agreement of 0.340 over all 105 pairs, against 0.318 for the strongest public model, ESM-C 6B, and 0.254 for the best of three methods that go by sequence similarity.

Why it matters: Telling these metals apart is a refining problem: China refined 91% of the world's supply in 2024 on the International Energy Agency's count, and the elements differ so little in size, 0.013 angstroms between neighbours, that the standard route needs harsh acids and a lot of energy. Proteins can distinguish them, and the question is whether a model can say which protein will, before anyone makes it. This model had no rare earth binding data in its training, and the lab is now testing the candidates the model generated and ranked.

Evidence and limits: Prediction only: the proteins the model designed are at Livermore awaiting testing, and no result from them is reported. The company's post, its own evaluation, no paper and no peer review. On the 17 pairs closest in size, the hardest cases, the company puts the gap to ESM-3 at 0.006 against a paired error of 0.005 and declines to rank the two. AlphaFold2 scored 0.191 here, below the simplest sequence-similarity baseline, 0.198.

By Armin Thomas, Gautam Machiraju, Benjamin Siranosian, Christine Parthemore

Radical Numerics ↗

MATARIA, a Shanghai company led by Zheng Liu of Singapore's Nanyang Technological University, raises a seed round of tens of millions of yuan led by Legend Capital

What happened: MATARIA, founded in Shanghai in September, announced the seed round on 19 October: Legend Capital led and Xiaomiao Langcheng joined. Zheng Liu, a chair professor of materials science and engineering at Nanyang Technological University in Singapore, is the founder; Bijun Tang, his former doctoral student, is CEO; Bo An, a presidential chair professor at the same university, leads training of the materials model; Yushan Xiao is CTO. The company says its model predicts the strength of commercial composites to within ±1.2%.

Why it matters: A lab in Singapore putting its company in Shanghai, and aimed at engineering materials rather than new molecules: composites for aerospace first, then semiconductor and infrared materials. Its pitch is data from instrumented experiments (furnaces with sensors, growth watched under a microscope) fed back into one model. Its plan is a deployable model in 18 months and pilots in three to five industries.

Evidence and limits: The ±1.2% figure, the infrared-material licence and the customer count are the company's own; no paper or outside test is cited, and the outlets disagree on customers (nearly 20 vs nearly 10). No amount beyond tens of millions of yuan and no valuation.

PEdaily ↗

On 131 protein-structure tasks, three of four frontier agents look up recorded metadata better than they compute geometry from coordinates

What happened: Matt Turk, James Golden and colleagues at Protege DataLab and Heimdall Bio ran 4,249 rollouts of four frontier models, plus 4,486 trials across 26 models. Claude Opus 5 (0.816), GPT-5.6-sol (0.812) and Grok 4.5 (0.785) are not separated by the intervals; Gemini 3.1 Pro Preview scores 0.707 and every gap to it excludes zero. Opus 5 averages 0.907 on metadata lookup and 0.716 on numeric calculation. Numeric tasks are 28 of the 131 but six of the twelve tasks all four models fail.

Why it matters: A researcher picking an agent to measure distances and angles in a structure needs the numeric score, not the overall one, and for Opus 5 the two differ by 0.19. The paper also shows how much of a leaderboard is the setup around the model: on the 99 tasks with eight full runs, one run per task instead of eight puts a different model first in 23.9% of resampled task sets, and swapping each provider's own command-line agent for the reference harness moves scores by -0.071 to +0.086.

Evidence and limits: The four experiments use different task subsets, so model, harness, access and task mix cannot be ranked against one another, and the harness comparison can only detect differences of about 0.12 to 0.20. A task all four fail is not shown to be unsolvable. The 131 tasks lean to biophysics, and the scores describe those model endpoints in the collection windows the appendix gives. A preprint, not peer reviewed.

By Matt Turk, Brandon L. Neel, Diana M. Lopez, James B. Golden

arXiv 2610.26829 ↗

Replayed over 203 archived spectra from a self-driving lab, an NTT agent decides when the fitting script can be nudged and when no number should be reported

What happened: Yuki K. Wakabayashi and Yui Ogawa put GPT-5.6 Sol around the unchanged Python script that extracts Urbach energy, an optical-quality measure, from transmittance spectra, and ran it over 203 archived spectra from NTT's own sputter-grown gallium-oxide film campaign. The script had returned a value for 183 and failed on 20. The agent kept all 183, recovered 16 of the failures by shifting the fitting window or relaxing the fit-quality threshold within set bounds, and returned NaN for 4 whose spectra do not support a reliable Urbach tail.

Why it matters: When a fitting script fails inside a closed loop, someone has to say whether the measurement can still yield a number, and that call is what stops the loop and waits for a person. Here the agent never touches the data or the physics (only parameters the script already exposes), and the number is still computed by the script. Abstaining is treated as the right answer rather than a failure, which is the part a loop that optimises on whatever number it gets cannot do.

Evidence and limits: Nothing new was grown or measured, and there is no independent value to check the agent's decisions against: whether a repair or an abstention was right is the authors' own reading of the spectra. Every spectrum went to the agent, but it was only ever asked to intervene where the script had already failed, so it is untested on an analysis that finishes and returns a physically wrong number. One descriptor, one campaign, one lab. A preprint, not peer reviewed.

By Yuki K. Wakabayashi, Yui Ogawa

arXiv 2610.25619 ↗

A team audits the single-cell perturbation harness it built and finds an identity predictor, returning the input unchanged, scores a perfect perturbation-effect correlation on all six splits

What happened: Manuel Gallone, Shyam Ravidath and Srihith Madireddy built an out-of-distribution harness (two datasets, six dataset-split combinations, scVI, CPA and a Ridge baseline, three uncertainty methods), then retrofitted null baselines it had never included. The harness fed each test cell to the model and scored it on reproducing that same cell, so an identity predictor reaches a perturbation-effect correlation of 1.0 everywhere. Against a constant train-mean predictor, scVI wins on 99.7% of Norman cells and 0.2% of Replogle cells.

Why it matters: Perturbation prediction is one of the directions this record follows most closely, and the audit says metric names there can outrun what is measured. The six failure modes are mechanical rather than statistical (scoring reconstruction as prediction, holding out sequencing batches instead of perturbations, silently swapping an unseen perturbation for a control), and each comes with a diagnostic that needs no retraining, so another harness can be checked largely from what it already stored. The one model never handed the target cell, the linear baseline, is the only one that beats its null on a genuine counterfactual.

Evidence and limits: It is the authors' own harness, not a published benchmark; PerturBench is cited but never audited. The audit needed no retraining, though models were re-run counterfactually, and everything is computed on two datasets with no new experiment. One result survives: split-conformal coverage holds at 0.900 in distribution and falls to 0.847 across cell types, while on Norman that nominal 0.900 covers 0.271 to 0.342 of differentially expressed genes.

By Manuel Gallone, Shyam Ravidath, Srihith Madireddy

bioRxiv ↗

Six foundation interatomic potentials are pushed onto disordered carbon, where low energy and force errors do not reveal the failures that binding curves and dynamics expose

What happened: Joseph Hart, Samuel G. H. Brookes, Fabian L. Thiemann and Christoph Schran screen six models on density-functional energies, forces and binding curves, then put four through melt-quench-anneal dynamics at seven densities, five runs each. Every pure-carbon run finishes. Adding oxygen and hydrogen separates them: MACE-MH-1 completes all 35 runs, ORB-v3 33, MACE-MP-0b3 25 and MACE-OMAT-0 18. UMA never reached this stage (its carbon-dimer curve has two spurious minima) despite low errors on flat-carbon environments.

Why it matters: A foundation potential is sold on transferring to systems it never trained on, and the usual evidence is a table of energy and force errors. Here those errors do not say which models break: UMA scores well on flat carbon, then is thrown out for a dimer curve no potential should have, while models sharing a training set share ring statistics across architectures. All four that ran reproduce the main experimental peaks for nanoporous carbon, so the question is where they stop, not whether they work.

Evidence and limits: One element family and one workflow. Stability is scored in 216-atom cells; the structures compared with experiment are larger, at one density, and matched to published measurements of different samples. The first author co-authored both the model that comes out best and the scoring framework the error table uses, and the paper declares no competing interests. Two of the six never reached dynamics, one on cost alone. It is a workshop paper.

By Joseph Hart, Samuel G. H. Brookes, Fabian L. Thiemann, Christoph Schran

↳ An earlier stress test of foundation potentials, on catalysis HetCat26: a model's rank on general materials benchmarks says little about how it handles catalysis
arXiv 2610.26701 ↗

METiS TechBio will design lipids for Eli Lilly with its own AI platform, under a collaboration worth up to about $1.1B in milestones

What happened: METiS announced a strategic collaboration with Lilly on 19 October to research lipid nanoparticle delivery that reaches one tissue rather than everywhere. METiS runs its own AiLNP platform, which designs the ionizable lipid inside the particle, and Lilly provides its drug discovery, development and commercialisation expertise. METiS takes an upfront payment of over $10M, is eligible for up to about $1.1B in development, regulatory and commercial milestones, and single-digit tiered royalties on net sales.

Why it matters: The record holds METiS's Hong Kong listing, its mouse data for a liver-cancer mRNA drug and a Phase 3 formulation result. This deal is about the platform rather than one drug asset: Lilly is paying for the design step, which is where METiS says its AI sits. Where a nanoparticle ends up in the body decides what an mRNA or gene therapy can treat, and it is still mostly found by trial and error.

Evidence and limits: A deal, not a result: no target, no programme count, no timetable, and nothing public about how well AiLNP picks lipids. All the money beyond the upfront is contingent on programmes advancing, and the upfront is stated only as a range.

Gelonghui (company notice) ↗

MOFFieldBench computes electron density and electrostatic potential for 46,000 metal-organic frameworks, so models can learn from the fields as well as the atoms

What happened: A Zhejiang University team ran DFT calculations, about a million CPU core-hours, on 45,909 frameworks from six databases, compressed the resulting fields about 26-fold and turned them into point clouds. Models reading the fields beat a structure-only model on 12 of 13 properties, all the adsorption and separation ones among them; the structure model kept band gap. Combining the two did better still on every property. Electron density predicted from structure is off by 0.51% on average, and starting DFT from it cut run time by 13.59%.

Why it matters: MOF models mostly learn from atom positions, while gas adsorption depends on how a guest molecule feels the framework's charge. Aligned electronic fields at this scale were scarce because they are costly to compute and store; the authors say the dataset will be released when the paper is published. The results say the fields carry information structure-only models were not using, most of all for adsorption and separation.

Evidence and limits: All computed, by the authors. The structure baseline is one model, CGCNN from 2018, so the comparison with structure rests on it. The electrostatic potential is reconstructed far worse than the density, 8.42% off and worse in large cells. The 13.59% saving leaves out the time spent predicting the density, and is an average: some frameworks ran slower.

By Zhaolin Hu

arXiv 2610.27036 ↗

Electric Plant's Bombadil learns plants' electrical signals from 4 million sensor-hours across 100 species, and follows hand-measured leaf stress with correlations of 0.27 to 0.71

What happened: James Kirk, Lee von Kraus and colleagues trained a Transformer, without labels, on over 4 million hours of recordings from electrodes in more than 1,400 plants of 100 species, in labs, greenhouses, orchards and forests. A second part, trained on over 41,000 handheld leaf readings, estimates seven stress measures such as how efficiently leaves photosynthesise and how warm they run. On held-out plants of six species under drought, its estimates moved with the readings at correlations of 0.27 to 0.71.

Why it matters: Earlier models of plant electrical signals were each trained for one task, usually on one species. One model that carries across species would let a grower read a crop nobody has labelled. On species left out of training the estimates still moved with the readings, less closely, and on plants stressed by salt or a herbicide, which the model never saw labelled, they shifted the way the literature expects.

Evidence and limits: The data, sensors and evaluation are all the company's own, in a preprint. The correlations follow one plant over time; about half the error is a fixed offset per sensor, and on the error measure, three of the seven estimates did worse than guessing each species' average. One of the six densely labelled species read at or below zero, and nothing yet shows a grower acting on it.

By James Kirk, Piotr Bednarski, Filip Twardy, Justin Mast, Lee von Kraus

arXiv 2610.26597 ↗

DeepSeek opens the Search and Fetch APIs behind its own search engine to every API user, at $0.75 per thousand calls

What happened: The two endpoints return ranked web results with a relevance score and an authority tier, and a page's content as Markdown. DeepSeek says its in-house engine has long served the search in its web app and API, handles hundreds of millions of requests a day and indexes hundreds of billions of pages, with filters for SEO spam, GEO manipulation and low-quality AI-generated text. Calls made through the server-side tools in DeepSeek Harness, Claude Code and Codex stay free until 31 October.

Why it matters: A literature agent needs a search backend it can call by program, and almost all of them sit on Bing's or Google's index. This is one of the few that does not, from a lab whose models many Chinese AI4S groups already run, priced per call rather than by tier. Whether its index covers journals, preprint servers and Chinese-language sources well enough for science is for anyone building on it to test.

Evidence and limits: The request and index figures are DeepSeek's own and unaudited; the English release note gives the daily requests and the Chinese one the index size. No coverage or freshness comparison against other search engines was published, and the endpoints were not called here.

DeepSeek API docs ↗

DeepSeek updates its Flash model to V4.1-Flash-1017 under the same name and price, with MIT-licensed weights and higher scores on reasoning and agent benchmarks

What happened: DeepSeek's model card calls it a minor update to September's V4.1-Flash: Humanity's Last Exam without tools 42.6 (from 36.8), Terminal-Bench 4.0 42.3 (31.2), DeepSWE v1.1 77.0 (74.2), Apex Bench v1.1 72.1 (64.6), with shorter runs and outputs. It serves as deepseek-flash on the web, in the app and on the API. The base is September's 552B-parameter mixture-of-experts model, a causal encoder-decoder that activates 8B parameters per token in prefill and 16B in decode; the checkpoint on Hugging Face holds 763B.

Why it matters: Humanity's Last Exam is written by subject experts across the sciences and mathematics, so a near-six-point gain there at an unchanged price changes what an open-weight model at this cost can answer. The weights are MIT-licensed: a group can run it on its own machines, with data it cannot send to a hosted model.

Evidence and limits: Every score is DeepSeek's own run, with harnesses it chose; no independent evaluation had been published by 17 October. Nothing here tests a science task beyond exam questions, and the September technical report was not read.

Hugging Face · DeepSeek ↗

Google Research runs AI agents in a closed loop with a wet lab for three rounds, and designed aptamer hit rates rise from 0% to 42% on thrombin

What happened: Zachary Cutts, Pooja Rao, Annalisa Pawlosky and colleagues gave Gemini-based agents literature search, folding tools and a Python environment, and had them design 1,000 single-stranded DNA aptamers per round against two proteins. Each pool was synthesised, pulled down on beads and sequenced, and the agents read the counts before designing the next. Corrected for bead background, hit rates went 0% to 26% to 42% on alpha-thrombin, or 37% counting only designs free of published motifs, and 10% to 4% to 34% on myoglobin, at about $3 a candidate.

Why it matters: Earlier studies of reasoning agents in molecular design tested their designs once, at the end. Here the measurements came back three times, and what the agents did with them is on the record: after a counter-screen showed that 97% of the cross-reactive sequences were G-quadruplexes, which stick to charged surfaces whatever the target, they moved the myoglobin designs to pseudoknots and hairpins, and specificity there went from 19% back to 72%. The authors picked aptamers because the designed sequence is the molecule, so one cycle is 10 days instead of the 3-6 weeks a protein needs.

Evidence and limits: Binding is measured in the authors' own pooled assay. Single-clone titrations covered eight thrombin designs only, did not reach saturation, and the authors call those affinities preliminary: nanomolar for reworked literature motifs, above a micromolar for de novo ones. Round 1's 0% on thrombin was a construct artifact the agents then fixed, the harness changed after it, and the authors say control arms with no feedback would be needed to credit the loop itself. A preprint, not peer reviewed.

By Zachary Cutts, Pooja Rao, Annalisa Pawlosky

↳ The Google agent system that ideated round 1 here Google introduces an AI co-scientist for hypothesis generation
↳ Real assay labels resharpening a co-folding model, on old data A few hundred real assay labels are enough to sharpen Boltz-2's virtual-screening picks
arXiv 2610.24806 ↗Read More · AI4S Brief →

A plug-in that adds differentiable restraints to the denoising step wipes out ligand chirality and cis/trans errors in six structure predictors, AlphaFold3 among them

What happened: Tatsuki Hori, Yoshitaka Moriwaki and Ryuichiro Ishitani at Institute of Science Tokyo and the University of Tokyo release RGI-Toolkit, which corrects the denoiser output at each reverse-diffusion step with a differentiable restraint loss, as a backend-agnostic library wrapping six predictors: Boltz-2, Protenix-v2, AlphaFold3, Chai-1, OpenFold3 and ESMFold2. On 209 protein-ligand complexes, conformer restraints lifted chirality agreement from about 50% to 100% and cis/trans from 70-80% to 100% for all six, with lower bond-length and bond-angle errors. No retraining. MIT-licensed.

Why it matters: Chemically invalid ligand geometry is a known weak spot of AlphaFold3 and its kin, and this fixes it from outside the model, at inference, without retraining it or changing a weight. It does not touch where the ligand sits: the authors report pose accuracy is neither helped nor hurt, so the gain is a clean stereochemistry patch, not a better binder prediction. Geometric and custom restraints can also push sampling toward a chosen conformational state.

Evidence and limits: The chirality and cis/trans figures are computed agreement rates against each ligand's ideal conformer, on 209 complexes with one seed each, not a physical measurement. The restraints only work as well as the reference conformer: a bad RDKit embedding misguides them. The two earlier RGI papers this builds on were in Boltz; the new work is extending that to six predictors and packaging it. A preprint, not peer reviewed.

By Tatsuki Hori, Yoshitaka Moriwaki, Ryuichiro Ishitani

↳ One of the six predictors it wraps AlphaFold 3 predicts interactions across biomolecules
bioRxiv ↗

One agent per perturbation: 1,946 copies of GPT-Rosalind re-derive most of a whole-brain Perturb-seq study's findings in 32 minutes, without the paper

What happened: Scripps Research, OpenAI and PerturbAI gave one agent to each of 1,946 perturbations in an in vivo whole-brain CRISPR Perturb-seq atlas, with the source manuscript withheld and published after the model's stated knowledge cutoff. Of 55 findings derivable from the expression data alone, the agents matched or refined 48. They adjudicated 1,519 high-confidence findings against the literature, reading 39,185 papers and keeping 16,445 citations. The run took 32 minutes.

Why it matters: The bet is coverage through many parallel agents rather than one stronger agent, and the paper measures it directly: at 893 perturbations a single agent cited 11 references while the distributed run kept 711 times more. Blinded experts preferred the distributed readings. This is a throughput claim about interpretation, the step that now limits what a large screen yields, not a claim that the agents found new biology.

Evidence and limits: All computed, on one atlas the same group produced, and every corresponding author has a stake: one at OpenAI, whose model this evaluates, two who co-founded PerturbAI, which hosts the data. Recovery is scored by the source study's own authors, 14 of 71 findings uncovered. Held-out predictions reach 0.705 balanced accuracy: 82% of the silent perturbations called, only 59% with a real response. The expert preference ranks readings, not their correctness. A preprint, not peer reviewed.

By Alexander Sun, Xin Jin

+1bioRxiv ↗

Claude, checked by an automatic evaluator, beats the best published quantum circuits on six of eight standard tasks and widens the trade-off on the eighth

What happened: Andi Gu, an Anthropic STEM Fellow, with Alek Kemeny of Anthropic and Harvard's Susanne Yelin and Mikhail Lukin, had Claude Mythos 5 write circuits in Python, each checked and scored by an evaluator. In six tasks the circuits cut both Toffoli and qubit counts against the best published design; a seventh had no published reversible design to beat. In the eighth, a new reversible modular inversion, its key step formalised in Lean, gives one design 17 times fewer gates than the smallest previous one, for 12% more qubits.

Why it matters: Most of the fall in what useful quantum chemistry is expected to cost has come from redesigning circuits, not hardware: the FeMoco estimate dropped about 150,000-fold over eight years of human work. A loop where the model writes circuits as code and a program checks every one speeds that redesign up: Anthropic sets the elliptic-curve design, from a single 53-hour run, against eight years of field-wide work. The same loop cut the costliest step of the DQI optimisation algorithm, its decoder, about 12-fold.

Evidence and limits: All of it is computed: the circuits have not run on any quantum computer, the counts come from the team's own evaluator, and the arXiv preprint is not peer reviewed. People wrote the briefs and at times told Claude to search more broadly.

By Andi Gu, Alek H. Kemeny, Susanne F. Yelin, Mikhail D. Lukin

Anthropic ↗

Anthropic is circulating a confidential draft AI safety bill on Capitol Hill under which a model could be stopped only on a billion-dollar or fifty-casualty risk from three named threats

What happened: A model could be blocked only on a foreseeable, imminent risk of over $1 billion in damages or of killing or seriously injuring more than 50 people, from a biological weapon, a model evading its developer's controls, or a cyberattack. Commerce would ask a federal judge in Washington to order it; no other agency could. Evaluators would register with Commerce, may be lab-paid if the fee does not turn on their findings, and must report an imminent risk within 72 hours. Some state AI laws would be preempted.

Why it matters: A frontier lab has written the text that would govern it. Politico notes its threshold language mirrors California's SB 53, and Anthropic calls the bill its Advanced AI Framework, pushed since June. For science the category that matters is biological weapons, one of three grounds on which a model could be stopped: an evaluator's report to Commerce would be the first step toward a court order there.

Evidence and limits: The draft is confidential and Politico did not publish it, so every provision here is Politico's account of a text it obtained; three people with knowledge are its sources for the pitch itself. The article does not name which lawmakers received it. An unnamed Anthropic spokesperson endorsed the bill as the company's framework without publishing the text.

Politico ↗

Google DeepMind's Gemini 4 Argon safety report finds no significant speed-up in its own AI progress, though most of its production code is now over 75% AI-written

What happened: Google DeepMind fitted its own capability index, GCI v1, to 123 models on 92 benchmarks. Public Gemini models gain about 0.1 points a month: 0.091 before 1 April 2026, 0.118 after, a difference that is not statistically significant. Most production code is now over 75% AI-written, yet fully delegated pull requests rose only from 7.5% in April to 11.9% in September; about 88% still need multi-turn human steering or human-written code.

Why it matters: Whether AI is speeding up its own development now has a frontier lab's internal measurements behind one answer, set against the September working paper co-signed by Geoffrey Hinton, Yoshua Bengio and OpenAI's chief scientist, which estimated that fully automated research could make progress tenfold faster. A survey of 12 senior researchers puts automation highest on well-specified, verifiable tasks and lowest on open-ended scientific ideas and research taste. Argon sits above the trend, which the report suspects is due to more compute and organisational investment.

Evidence and limits: The index is DeepMind's own and built on benchmarks: a steady slope means measured capability grew steadily, not that no research step got faster, as the report itself notes. The post-April slope rests on few models (0.053 to 0.171 at 95%), so it cannot rule out a speed-up either. The survey and the agent-use sample, graded by Gemini Flash 3.8, are internal, and the finding supports the report's own conclusion that the risk is low.

Google DeepMind safety report ↗

EZPro-Fit, a model that designs an enzyme's protein and its DNA together, proposed cellulase variants; of 13 tested, two were both more heat-stable and more active

What happened: Ran Xu, Liangzhen Zheng of Zelixir, Dongyang Liu, Jingjing Guo and colleagues at Macao Polytechnic and Nanjing Agricultural universities trained a model on the protein structures and gene sequences of heat-loving microbes, then tuned it to E. coli. From structures, it recovered 55.54% of residues, 17.4% more than ProteinMPNN in relative terms. For the cellulase cel5E, its candidates passed stability and conservation filters and 13 were tested: N291D raised the melting point from 63.16 to 69.58 °C with about 35% more activity, D259E reached 72.35 °C with 17% more.

Why it matters: Most protein design stops at the amino-acid sequence; this model also writes the DNA the host cell will read, and the lab test asked for two properties at once, heat stability and activity, which often pull against each other. The double mutant D218E/S262I shows that pull: the most stable variant at 78.12 °C, it kept about a third of the activity.

Evidence and limits: One enzyme and 13 variants, with no comparison against variants picked by another method or at random, so the hit rate cannot be judged; the candidates also passed energy and conservation filters, so the model's own share is unclear. The DNA design was scored only in software. A preprint, not yet peer-reviewed.

By Ran Xu, Linyan Zhao, Liangzhen Zheng, Dongyang Liu, Jingjing Guo

Research Square ↗

Blitz cuts AlphaFold 3's structure-sampling stage from 200 steps to eight with little loss of accuracy, and shows how averaged scores hide the defects that come with fewer steps

What happened: Vinay Saji Mathew and colleagues at Penn State and the University at Buffalo distilled the diffusion stage of AlphaFold 3 and Boltz-2, the part that turns a predicted layout into atoms, into an eight-step student. On about 2,300 Boltz-2 benchmark targets, the AlphaFold 3 student scores 0.8635 complex lDDT against its teacher's 0.8615, and predicted ligands passing PoseBusters' validity checks fall from 45.0% to 43.0%. For Boltz-2 the cost is larger: ligand validity falls from 60.9% to 52.0%, with structures carrying any geometry violation rising from 30.3% to 41.9%.

Why it matters: Protein design and screening pipelines call a structure predictor tens of thousands of times, so the sampling stage's cost adds up. The paper also argues that speed-up claims have been scored too loosely: earlier few-step samplers were judged on similarity scores with the chemistry checks switched off, which stay high while bonds, angles and clashes go wrong. Blitz reports both, under one protocol for every method, and shows a one-step sampler losing about 32 points of lDDT once the checks are on.

Evidence and limits: Computed, by the authors, on public benchmarks. Only the sampling stage gets faster: the paper says the trunk, the network that runs before sampling, is unchanged and still costly, so eight steps is not a 25-fold faster prediction. No end-to-end timing is reported.

By Vinay Saji Mathew, Soundar Kumara, Gretta Kellogg, William K. M. Lai

arXiv 2610.23703 ↗

HighFold-Lasso gets AlphaFold 3 to thread all 52 lasso peptide structures in its test set correctly by starting it from a lasso shape

What happened: Lasso peptides are short molecules whose tail is threaded through their own ring, which makes them stable and hard to predict. A Macao Polytechnic University team led by Hongliang Duan teaches AlphaFold 3 the ring's unusual bond and starts its sampling from a lightly perturbed lasso shape. On 52 experimental structures it gets the threading right every time, with 2.375 Å mean backbone error over the whole peptide. Plain AlphaFold 3 threaded 67.3% at 2.72 Å; LassoPred, a lasso-specific tool, threaded all of them at 3.50 Å.

Why it matters: Lasso peptides are scaffolds for peptide drugs, and one, lariocidin, is a broad-spectrum antibacterial that has worked in mice; engineering them starts from their 3D shape. General predictors often return the right bonds with the tail unthreaded, which is in practice a different molecule. Building the known topology into the starting point fixes that while keeping AlphaFold 3's accuracy.

Evidence and limits: Computed, by the authors. The threaded starting shape comes from LassoPred, so the 100% shows the method keeps a threading it is handed, not that it finds one, and it leans on the tool it is compared with. Of the 52 test structures, 50 come from LassoPred's benchmark. The gain over LassoPred is 3.50 to 2.375 Å; over AlphaFold 3, about a third of an ångström.

By Sen Cao, Hongliang Duan

bioRxiv ↗

A Toronto system given a goal, photos of the room and the instruments' interfaces built a digital twin of its lab, taught its robot arm the plate transfers and ran a 96-well quantum-dot screen

What happened: Jiaru Bai, Alán Aspuru-Guzik and colleagues at the University of Toronto describe agents that start from the equipment in a room, rebuild it as a simulated twin, learn missing robot skills by trial, first in simulation, and write the workflow. In the one physical test, after a human approved the plan, the system wrote a 236-command liquid-handler protocol, had the arm carry the plate to a sealer and then a plate reader, and an 8-hour cadmium sulfide quantum-dot screen found the ligand and pH range where emitting dots formed.

Why it matters: A self-driving lab today runs only the procedures it was built for, and adding a new one takes specialist engineering. If agents can build the missing pieces, what a lab can try is limited by its equipment rather than its code, and researchers set goals instead of programming robots. The authors also turn each solved skill into a script that runs without the language model, because the agent loop was too slow for the chemistry.

Evidence and limits: One physical workflow on known chemistry, run by the authors; coordination across several robots was shown in simulation. The paper gives no count of human interventions or of engineering time saved, and says people still had to settle disagreements between agents and supply physical facts the instruments could not sense. It is a preprint.

By Jiaru Bai, Yang Cao, Varinia Bernales, Alán Aspuru-Guzik

arXiv 2610.23826 ↗

Accel is set to lead a $60M round for Nando de Freitas's Revolution Labs, below the $100M+ reported in September

What happened: Sifted reported on 15 October that Accel is set to lead a $60M round for Revolution Labs, founded by Nando de Freitas after about a decade at DeepMind and a stint at Microsoft. Dealroom's summary of the report adds that GV and NEA are said to have joined. The company builds diffusion models, extending them from images and audio to text. In September Bloomberg had reported talks to raise at least $100M initially.

Why it matters: The September figure was a target in talks; this is the first report of a round sized and led. At $60M, the first close is smaller than the $100M+ floor reported then, though Bloomberg also said the raise would likely come in several tranches. It is one more DeepMind alumnus raising for a bet on a different kind of model than today's language models.

Evidence and limits: Media-reported and not closed: Sifted's headline says Accel is set to lead, and Sifted's text could not be read here. GV and NEA come only from Dealroom's summary. No stage, valuation or company statement; no model has been published.

Sifted ↗

AstraZeneca pays insitro $40M upfront for AI-led target and drug discovery in MASH and cardiomyopathy, with up to about $1.46B in milestones

What happened: insitro will use its Virtual Human platform to find disease-causing biology in both diseases and take targets AstraZeneca nominates from discovery to a development candidate. The collaboration is worldwide and exclusive, and AstraZeneca runs clinical development, regulatory work and sales. Beyond the $40M upfront, insitro can earn up to about $1.46B in discovery, development and commercial milestones, plus single-digit royalties. Daphne Koller, insitro's founder and CEO, announced the deal.

Why it matters: A large drugmaker is paying for an AI company's reading of disease biology at the target stage, the earliest and riskiest decision in drug R&D, and not only for molecule design: insitro's platform looks for what causes the disease, then takes targets AstraZeneca picks through to a drug candidate. insitro already works with Bristol Myers Squibb, Lilly and Gilead; AstraZeneca is the fourth.

Evidence and limits: The $1.46B is a ceiling that depends on milestones being met; only the $40M is certain. The release names no target, no number of programmes and no timeline, and gives no data from the platform.

insitro release ↗

CERN and Mistral sign a statement of intent to build one foundation model for collider physics, trained on billions of simulated LHC collisions

What happened: The two plan a long-term partnership on foundation models for science, starting with high-energy physics. The goal is a single pretrained Large Physics Model that could reconstruct collisions, identify particles, flag unexpected signals and help evaluate future detector designs: jobs now spread over many separate tools; reconstruction alone runs through a chain of specialised algorithms. Enrica Porcari, CERN's chief information officer, and Johannes Brandstetter, Mistral's vice-president of AI for engineering, spoke for the two.

Why it matters: Particle physics has used machine learning for years, but one model per task. The plan is for a frontier model company to learn across the whole reconstruction chain, at the lab holding about an exabyte of LHC data, before the High-Luminosity LHC raises the collision count tenfold around 2030. Brandstetter co-founded Emmi AI, the physics-simulation start-up Mistral bought in May, and worked at CERN before that.

Evidence and limits: A statement of intent, not a contract: CERN's release gives no budget, timeline, compute figure or terms on who owns or can use the model. Nothing has been trained yet, and 'the first foundation model for collider physics' is the release's own description.

CERN news ↗

The European Commission asks companies and foundations to pledge models, computing and software licences to Europe's AI-for-science researchers; seven sign up first

What happened: Launched at the European AI in Science Summit in Dublin under RAISE, the Commission's AI-for-science programme, the initiative collects in-kind help (access to frontier models, computing, software licences, data, training) beyond what public funding provides. First pledges came from the Novo Nordisk Foundation, NVIDIA, Elsevier, Sanofi, Frontiers, Mistral and Google DeepMind. Elsevier's own release lists its share: 4,000 free licences, 1,000 of them for its LeapSpace research assistant, and about EUR 1M a year of in-kind support and funding.

Why it matters: The initiative is part of the EU's AI in Science Strategy of October 2025, and asks companies and foundations for support beyond what public funding alone can provide. A pledge has to show support beyond the pledger's direct commercial interest, and the Commission will present pledges and progress at each year's summit, so what was promised can be checked against what was delivered. It counts CERN and Mistral's new partnership on a physics foundation model as part of the initiative.

Evidence and limits: The Commission's release gives no total value and no terms for six of the seven pledges; Elsevier says it will refine its own details with the Commission in the coming weeks. Pledges are voluntary and in kind, and some, like Elsevier's licences, are free use of the pledger's own products.

+5European Commission ↗

OpenAI opens GPT-Rosalind to US university labs through a Rosalind Academic Plan: up to 30 free ChatGPT seats for up to a year, no API

What happened: OpenAI's terms: up to 30 ChatGPT Business Standard seats at no charge for up to twelve months, for eligible labs at US universities, with research data on those accounts kept out of model training by default. A seat does not unlock GPT-Rosalind. That needs a separate trusted-access review of the lab head's identity, employment and authority, the research purpose, and a named institutional safety contact. Subscription seats only, so no API, and a university holding an Enterprise agreement applies through the school.

Why it matters: Until now the model went to organisations through trusted access, with Amgen, Moderna, the Allen Institute and Thermo Fisher as its named partners. This is the first way in for a university lab on its own, and it says where OpenAI expects life-science demand to come from next. Without the API it stays something a researcher types into rather than something a lab wires into its own pipeline, which is the difference between a tool and infrastructure.

Evidence and limits: What counts as an eligible lab, how long the trusted-access review takes, how many labs will be admitted and what happens to access after twelve months are all unpublished. Benchmark scores for GPT-Rosalind are circulating from a single secondary source and are not on OpenAI's page, so they are left out here.

OpenAI ↗

XtalPi names its first siRNA drug candidate, for IgA nephropathy, nine months after the programme began on its Kodexia platform

What happened: The company says generative design found a stretch of the target's mRNA nobody had used, and set the siRNA sequence and its chemical modifications together. In its own tests the candidate silenced the target at sub-nanomolar concentrations, with an IC50 tens of times below two clinical-stage molecules against the same target, and one dose kept the protein suppressed in monkeys for months. XtalPi says toxicology showed a broad safety window and will take the candidate toward the clinic.

Why it matters: On 6 October XtalPi said this programme had reached monkey data in seven months; this is the next step it promised then, a candidate chosen for development. It is XtalPi's first named candidate in siRNA, a modality new to it, and the release says the model's ranking of the designs held up in animals. For a platform company that sells design work, a candidate of its own is an asset it owns.

Evidence and limits: Every figure is XtalPi's own, in a press release with no data, figure or paper; the target and the two reference molecules are not named. A preclinical candidate comes before IND-enabling studies and any human dose.

XtalPi via PR Newswire ↗

OmicsBench breaks 97 bioinformatics studies into 662 dependent subtasks, and no model and harness combination comes close to saturating it

What happened: Gideon Shaked and Siddharth Nagisetty, both at the University of Michigan and AfterQuery, build each task as a directed acyclic graph of subtasks over a real biological dataset, posed one per conversational turn and scored against an answer key by 58 graders that match entities through reference databases, not by string. All twelve models ran on one harness, two on two more. Means ran 0.43 to 0.57 with no feedback and 0.54 to 0.67 when a failing answer could be retried; the slowest agent averaged 3.6 hours a task.

Why it matters: Most bioinformatics benchmarks ask one question in one prompt, which cannot show whether an agent carries intermediate results through a real analysis. Here every combination scores lower after its first turn, and lower again on subtasks that build on its own earlier answers, with feedback winning back only part of it. That shape of failure is exactly what a single-prompt score cannot see.

Evidence and limits: Scores measure agreement with an answer key, not whether the analysis is biologically sound. The authors call the retry mode open to reward hacking by design and do not quantify how much of its gain that explains. 94 of the 97 tasks are private, so the numbers cannot be reproduced from outside, and harness effects cannot be separated from model effects. The failure labels come from Opus 5, one of the models judged. A preprint, not peer reviewed.

By Gideon Shaked, Siddharth Nagisetty

arXiv 2610.21074 ↗

Holyvolt raises $45M to wire battery AI models into the high-throughput lab it bought, and take a nickel- and cobalt-free cathode to market in 2027

What happened: Zone II and CC.VC backed it, with angels the release places in finance and Fortune in defence and finance. Fortune reports the round is all equity and values Holyvolt at $245M, and later struck Fifth Wall from its own list of this round's investors after what it calls a disclosure error by the company; the release names it as an existing investor. The lab is Wildcat Discovery Technologies, bought in 2026: 18 years of runs, more than 500,000 cells cycled. Mathias Ingvarsson is CEO, Steven Prast, formerly of Tesla, COO.

Why it matters: Most AI-for-science companies build a model and then look for data to feed it. Holyvolt bought the lab and the 18 years of cycling data first, then trained on them, and its models now pick what the lab makes and cycles next. The timing comes from procurement: from 1 October 2027 the Pentagon cannot buy batteries from CATL, BYD and four other named Chinese makers, and Holyvolt plans to sell its DRX cathode into drones first.

Evidence and limits: Nothing here is a result. The ten-times figure comes from one customer case study, and the hundred-times figure for the closed loop is the company's own. DRX data has been shown at scientific conferences, the International Battery Conference in March 2026 among them, and the suppliers are undisclosed. The $245M valuation rests on one person Fortune does not name.

Holyvolt release ↗

Google DeepMind shows its Antigravity agent hunting antimicrobial peptides, and reaches one candidate now in wet-lab testing with no results yet

What happened: A post by Pengfei Tian, Maxwell L. Bileschi, Lucy J. Colwell and colleagues walks one search through Antigravity, which they call an agentic science workbench. The agent reads UniProt entries through ProtNLM, pulls structures from the AlphaFold database, runs BLAST at EMBL-EBI and Foldseek, and shows the result in a 3D viewer newly embedded in the product. It lands on a 97-residue bacteriocin found in Streptococcus pseudopneumoniae, UniProt A0A0U0D591, whose predicted activity is against the pathogens behind respiratory-tract infections.

Why it matters: It is a capability update and a workflow demonstration, not a finding: what it shows is several databases and services folded into one session a biologist drives. The post's own framing is that the wet lab is still the test. It marks where DeepMind is pointing a general coding agent, and the one candidate it names has reached an assay.

Evidence and limits: The post reports no experimental result: no count of candidates generated, none tested, no hits, no potency. The named candidate and several others from the same pipeline are described as in wet-lab validation, with results framed as still to come. No paper or preprint is linked. Every step shown is the team's own walkthrough of its own product.

By Pengfei Tian, Lucy J. Colwell

Google DeepMind ↗

Made to invent each atom's electronic fingerprint alongside the structure, a crystal generator triples its hit rate on the hardest two-property target

What happened: Ibuki Okuda, Izumi Takahara and Teruyasu Mizoguchi extend Microsoft's MatterGen so one network denoises the crystal and, for every atom, either its Bader charge (how much charge it carries) or its atomic density of states (which energies its electrons occupy). Of 1,024 structures per setting, counting only stable, unique, novel ones, 1.1% of the baseline's landed inside both a 2 eV band gap and a -4 eV per atom formation energy, against 3.5% of the density-of-states model's. Single targets gain more in points and less in proportion.

Why it matters: Asking a generator for a target property costs structural quality, and the electronic variable makes it cost less: at that two-target setting the share of stable, unique, novel structures falls from 33.3% to 21.8% with the descriptor and from 33.6% to 15.4% without it. The control experiments are the part to carry away. Corrupting the charges, or attaching a random number that means nothing, also raised the unique-and-novel share, so a novelty gain on its own shows only that something random was added, and it takes stability, validity and the target hit rate to tell physics from noise.

Evidence and limits: All of it is computed: structures are generated and scored by DFT, and nothing was synthesised or measured. A hit means landing within 0.5 eV, or 0.5 eV per atom, of the target. The validity filter is the authors' own caveat (about 30% of their training structures fail its charge-neutrality check), so both the stricter and the looser counts are reported. Several single-property gains are a few points, and some do not reach significance at 1,024 samples.

By Ibuki Okuda, Izumi Takahara, Teruyasu Mizoguchi

npj Comput. Mater. ↗

A fine-tuned Aurora reproduces a chemistry-climate model's ozone, aerosol and radiation about 100 times faster, and satellite ozone in its training corrects biases it would have inherited

What happened: James Weber (University of Reading) and Makoto Kelp (University of Utah), equal authors, fine-tune Microsoft's Aurora on the UKCA chemistry-climate model, in three variants. The first reproduces 23 of 27 evaluated fields at R-squared of at least 0.85 in troposphere and stratosphere, with annual mean biases under 4% for ozone, CO and temperature; a simulated year takes 5.5 minutes on one GPU against 9.5 hours on 576 CPU cores. A second, trained on paired emissions scenarios, reproduces ozone's response to NO and CO. A third is trained on satellite ozone.

Why it matters: Chemistry is the most expensive part of a climate model, so it is usually simplified or fixed in advance, and trying many emissions scenarios needs it fast. The third variant is the interesting one: trained on Aura MLS satellite ozone and tested on years held out, it cut the error in ozone averaged around each latitude band by 23%, from 0.37 to 0.28 ppm, roughly 10 to 25 km up. That correction sits in the weights, so it carries to runs where no observation exists: an emulator can be better than the model it learned from.

Evidence and limits: Most of what is measured is agreement with UKCA, so a well-reproduced field inherits UKCA's own errors, and the species predicted are a subset the authors chose of UKCA's 100-plus. The satellite gain holds only in the latitude-band average: the same model is 9.6% worse at individual retrievals. The emission-response variant has its winds and temperature prescribed from the control run, and the 50-year run recycles one year of forcing.

By James Weber, Makoto Kelp

arXiv 2610.22555 ↗

Terray and NVIDIA fine-tune a Nemotron model to read chemical reaction diagrams, setting a new best on the RxnCaption benchmark

What happened: Terray Therapeutics, with NVIDIA, fine-tunes NVIDIA's Nemotron 3 Nano Omni and Nemotron 3.5 Super-VL to turn chemical reaction diagrams (the route drawings in papers) into structured reactions. On RxnCaption's own 15k test set it reports a HybridMatch F1 of 63.4 against the previous best of 59.8, clearing every published number across the sets tested; a single Super-VL run beats the matched Omni model. Zero-shot, frontier models score far lower on that same set (Claude Opus 5.5 at 28.9, Gemini 3.1 Pro at 10.5).

Why it matters: Synthesis planners like Terray's own TerraSynth need training data drawn from how chemists actually describe routes, and most of that sits locked in diagram form in papers. A model that parses those diagrams turns the literature into structured reaction data a planner can learn from, and lets an agent read a chemical document on the fly. The gain over the prior best is modest (about four F1 points), but it is on a public benchmark scored with the original authors' code.

Evidence and limits: A benchmark score from a company post, not a paper, and self-reported: Terray ran the public benchmark with the RxnCaption authors' scoring code, but no outside party checked it. It measures parsing accuracy on a 400-diagram test set, not any downstream improvement to synthesis planning or a drug program. No model weights are released.

Terray Therapeutics ↗

Designed from scratch, 13 of 69 cysteine proteases cut the peptide backbone where told, and designs cut their targets in cells

What happened: Hojae Choi, Samuel Pellock and David Baker at the University of Washington's Institute for Protein Design, with Donald Hilvert at ETH Zurich, report enzymes that use an activated cysteine to hydrolyse the polypeptide backbone in a sequence-dependent way. 13 of 69 designs worked, 19%, with rate enhancements over the uncatalysed reaction of up to 3x10^7. The folds are unlike natural proteases (TM score below 0.50), six crystal structures sit within 1.2 A of the design models, and the designs cleave their targets in mammalian cells.

Why it matters: A peptide bond in neutral water lasts hundreds of years, and de novo enzyme design had mostly managed reactions with low barriers. Cutting one where the designer chooses turns protein design into a way to make programmable scissors: pick the sequence, get an enzyme that cuts it. That is a different kind of tool from a binder, which is what designed proteins have mostly been.

Evidence and limits: Activity is still short of natural cysteine proteases: the best design, after optimisation, reaches 413 M-1s-1 against 350,000 for the Ulp1 the motif came from, which the paper puts down to imperfect active-site preorganisation and substrate positioning. In cells the proteases cut a substrate the authors designed and transfected in with them, not an endogenous protein, and the work is the designing lab's own.

By Hojae Choi, Samuel J. Pellock, Donald Hilvert, David Baker

↳ Related commentary Papers he draws on
Nature ↗Read More · AI4S Brief →

Gaowei Yiyao closes a Pre-A round for AI target discovery, with its first candidate for Notch-driven cancers in Phase I

What happened: Huatai GenScript Fund and Orient Jiafu co-led; Guofang Capital, Ruili Investment and Chuchang Fund joined, and existing investors Xinghua Dingli, West Lake Innovation and GF Xinde followed on. Qifeng Capital was exclusive financial adviser. The announcement gives no round size, saying only that the Hangzhou company has raised several hundred million yuan so far this year, and no valuation. The money goes to the AI target platform and partnerships, the multi-centre Phase I study of GW-01, and preclinical work on new programmes. Professor Xu Li, the founder, spoke for it.

Why it matters: This is a round about targets, not molecules: the company's pitch is that its GROOVY model mines protein-interaction data to find targets others call undruggable, and GW-01, a small molecule for cancers driven by an activated Notch pathway, is the first one it has carried into a clinical trial, now enrolling at several hospitals at once, under three years from target to clinic, by its own account. Two more platforms, ACUMEN for pairs of neighbouring surface proteins and NEXUS for tumour neoantigens, were launched recently.

Evidence and limits: Everything about the platform is the company's own account: no paper, no target list, no data on GW-01 beyond that Phase I has started enrolling; 'inhibitor' is PEdaily's own summary box, not the announcement, which says only that the drug targets Notch-pathway-activated cancers. The round size is not stated, and the 'several hundred million yuan' figure covers this year's rounds together, not this one.

PEdaily ↗

Zinc proteases designed with RFdiffusion cut chosen peptide bonds, and some cut TDP-43 and amyloid-beta

What happened: Anqi Chen, Kejia Wu and David Baker at the same institute, again with Donald Hilvert at ETH Zurich, published the same day, used RFdiffusion to put a water-activating zinc site next to a peptide-binding pocket. Of 135 designs tested, 36% cut their target bond; the best beat the uncatalysed reaction by more than 10^8-fold, and four substitutions took it past 10^10. Designed proteases selectively cut the disease proteins TDP-43, amyloid-beta and serum amyloid A, up to 10^9-fold, and switch on caged cytokines.

Why it matters: The disease targets are the point: TDP-43 and amyloid-beta are proteins drug makers have tried to clear, and cutting one is a different kind of intervention from binding it. With the cysteine-protease paper beside it, the lab now reports two independent chemistries for the same hard reaction, one metal-based and one not.

Evidence and limits: Rate enhancements are measured against the uncatalysed reaction, not against a natural protease: out of the computer the designs run 10^3 to 10^4 below the best natural ones, two orders after four substitutions. The disease proteins were cut as purified protein in vitro, and nothing reaches a cell interior, an animal or a patient. The designers have filed two provisional patents on the methods and designs.

By Anqi Chen, Kejia Wu, Donald Hilvert, David Baker

↳ Related commentary Papers he draws on
Nature ↗Read More · AI4S Brief →

Ai2 releases HiRO-ACEv2, which generates global 3 km rain, wind and pressure for about 1/300 the cost of the simulation it learned from

What happened: The system pairs ACE, which runs the atmosphere at 100 km, with a new downscaler, HiROv2, that sharpens it to 3 km and now predicts several fields at once rather than rainfall alone. Given coarsened X-SHiELD data it matches that simulation's high-resolution statistics to within 3%, even for events that occur once in a million data points, and estimates tropical-cyclone energy for storms it never trained on. Over a 10-year run the hurricane energy is comparable to X-SHiELD's. The models, notebooks and a comparison demo are public.

Why it matters: Work on extreme-event risk needs many years of storm-resolving data, and Ai2 puts generating it with X-SHiELD at roughly 300 times the cost. At about a three-hundredth of the cost, a decade of global 3 km rain and wind becomes something a research group can generate itself, several times over, which is what estimating rare events takes.

Evidence and limits: Every number is measured against X-SHiELD, the simulation HiRO learned from, not against observations. Ai2 says HiRO only works with the ACE version tuned to X-SHiELD, so it cannot yet produce a warmer climate or reanalysis like ERA5, and winds and pressure around hurricane eyes stay more lopsided than in X-SHiELD.

↳ Related commentary Two of the systems they weigh
Ai2 (Hugging Face) ↗

A year of blind methane releases tests 12 satellites and 15 analysis teams: instruments built for methane catch 92-100% of releases, and AI methods produce 79% of the false alarms

What happened: A team led by Frances E. Reuland and Adam R. Brandt at Stanford released metered methane in Arizona as satellites passed overhead: 481 releases of 9.5 to 1,184 kg an hour and 265 blank controls, with the teams not told which was which. Fifteen teams from nine countries made more than 2,250 estimates from 12 government, commercial and non-profit satellites. Instruments built for methane detected 92-100% of releases with 0-11% false positives; repurposed ones 62-88%. Teams applying AI methods to Sentinel-2 and Landsat images made 79% of all false positives.

Why it matters: Satellite plume reports already feed leak alerts and national methane rules, and the EU's proposed import standard for gas leans on them, yet Carbon Mapper's Tanager-1, EMIT, GHOSt and the AI detection methods had had little or no blind testing. This one gives each a measured detection rate and error against known releases, and leaves an open dataset for training the next detectors.

Evidence and limits: Teams using AI scored 0.62-0.77 accuracy, better than chance, but made most of the false alarms, and the authors say AI methods need more work before routine use. Releases were at a known site: the authors' conclusion holds when the source location is roughly known, and cloud cover over 20% degraded every system.

By Frances E. Reuland, Adam R. Brandt

+1Nature ↗

Iambic prices its Nasdaq IPO at $16 a share, the middle of its range, raising $150M before costs

What happened: Iambic sold 9,375,000 new shares at $16 for $150M gross, and the underwriters can buy 1,406,250 more within 30 days. The shares started trading on 15 October as IAM, opened at $16.15 and closed at $18.91, 18% above the offer price; on 16 October they closed at $23.81. J.P. Morgan, Jefferies, BofA Securities and Citigroup ran the books. Tom Miller, co-founder and CEO, and Fred Manby, co-founder and CTO, lead the company.

Why it matters: Public investors have now put a price on an AI drug-discovery company whose most advanced drug, the HER2 inhibitor IAM1363, is still in Phase 1. The prospectus puts the money, with cash on hand, toward finishing that trial and starting Phase 2 and 3 trials, taking IAM217 and IAM-C1 through Phase 1 dose escalation, and the AI platform, and says it lasts into the fourth quarter of 2028. By the prospectus's share count, $16 a share values Iambic at about $760M.

Evidence and limits: $150M is before fees; the offering was due to close on 16 October and the extra-share option is unexercised. The price says what investors will pay, not whether Iambic's AI-designed drugs work.

Iambic release ↗

Gilead pays Vir $90M upfront to design three masked T-cell engagers for solid tumours, using an AI-assisted protein-engineering platform

What happened: Vir Biotechnology will design and optimise three dual-masked T-cell engagers against undisclosed solid-tumour antigens, using its dAIsY platform and its PRO-XTEN mask, which keeps the drug inactive until tumour proteases cut it free. Gilead takes an exclusive licence and runs development. The $90M upfront is $65M in cash and a $25M share purchase at a 30% premium; up to $45M more comes in near-term milestones and up to $1.74B later. Marianne De Backer, Vir's CEO, announced it.

Why it matters: Gilead is paying for design work, not for a molecule that exists: Vir is to make three candidates to order, with an AI-assisted engineering platform and a masking technology already in the clinic. A day earlier Zealand Pharma likewise paid Generate Biomedicines upfront, $30M, for AI-designed proteins not yet made.

Evidence and limits: How much of the design the AI does is not stated: the release calls dAIsY a platform for multiparameter optimisation and gives no data from it. The $1.74B depends on milestones, and the targets are undisclosed.

Vir release (Business Wire) ↗

Google.org gives $36M to 17 organisations using AI in science, from fusion plasmas and sodium-ion batteries to African drug-metabolism genes

What happened: The Impact Challenge: AI for Science drew applications from 30 countries. Recipients include MIT (agents that read microscope images for materials discovery), the Max Planck Institute for Plasma Physics with TU Eindhoven (physics-informed AI for fusion plasmas), Cambridge (forecasting sodium-ion cathode wear), the Allen Institute (DNA sequences aimed at vulnerable brain cells, shared openly) and the University of Cape Town (variants in drug-metabolising genes). Each can join a six-month Google.org accelerator with engineering help and Google infrastructure. Maggie Johnson, head of Google.org, announced the awards.

Why it matters: Almost all the money goes to universities and research institutes: eight projects in climate, energy and materials, nine in health and life sciences, and four at institutions in Chile, Singapore, Australia and South Africa, plus AfriClimate AI. Alongside the grants, the accelerator puts Google engineers and Google infrastructure behind the teams, so part of the support is access to Google's own infrastructure.

Evidence and limits: Google's post gives no amount per project and no project leads, and each aim is one line; none has a result yet. AfriClimate AI's flash-flood warning time, from under three hours to over six, is a target, not a measured gain.

+3Google blog ↗

Leash Bio releases Minos: its pre-measured protein-binding screens as worlds where an AI agent picks molecules to test and gets the real binding result back at once

What happened: Minos turns Leash's DNA-encoded-library screens, millions of molecules measured against many proteins, into environments where an agent chooses molecules within a budget and is told what was measured. The flagship task gives no starting molecule and a budget of 100 molecules over 20 rounds, across 33 targets with about 6 million molecules each. Leash reports about 100,000 agent trajectories in six weeks, releases a few environments and thousands of reasoning traces, and finds that stronger models do better and weaker ones stay too long in poor regions of chemical space.

Why it matters: Because every molecule was measured in advance, an agent's choices cost compute rather than lab weeks, and the results of the molecules it did not pick are known too, so its decisions can be judged, not only its final answer. Leash CEO Ian Quigley's argument is that data collected this way is reusable experience, in the way game moves are for a game-playing model.

Evidence and limits: All results are Leash's own; agent performance is shown in figures this page did not read values from, and the preprint was not opened. The environments cover binding to one target among molecules already screened, with no pharmacokinetics or toxicity, and the published ones are a small sample of what Leash holds.

Leash Bio blog ↗

A machine-learning correction on top of ECMWF's forecasts tops ECMWF's 2025 real-time contest for weather three and four weeks ahead, ahead of six operational forecast centres and 34 teams

What happened: Probabilistic bias correction (PBC) learns from a forecast system's past predictions and the weather that followed how to shift its probabilities. Over 2016-2024 it improved ECMWF's already debiased dynamical model on 91% of pressure, 92% of temperature and 98% of precipitation targets; on the 2025 test year it doubled the skill of ECMWF's AI system. Entered as MicroDuet in ECMWF's AI Weather Quest, it scored best for every variable and both lead times in the September-November 2025 season, and best again in the winter season that followed.

Why it matters: Two to six weeks ahead is where farmers, grid operators and flood planners need a forecast and where models do worst, often no better than the long-term average for the date. PBC is a layer that works on top of any model, and its contest scores come from forecasts issued before the weather happened, set against operational centres' own systems. Hannah Guan and Soukayna Mouatadid led it, with Judah Cohen of MIT and Lester Mackey of Microsoft Research; Cohen says Kenya's meteorological office has asked about using it.

Evidence and limits: The contest covered two seasons, and ECMWF, which runs it, has two authors on the paper. For precipitation, all six centres' debiased forecasts scored below the climatological average, so the gain starts from a low base. Better weekly-average scores do not yet show a decision made better, and the paper reports no operational use yet.

By Hannah Guan, Soukayna Mouatadid, Judah Cohen, Lester Mackey

↳ Related commentary Papers he draws on
Nature ↗

Danaher and NVIDIA say they are working to put accelerated computing into Danaher's instruments, starting with a select group of them and with no terms disclosed

What happened: Danaher's release says the two are working to combine its instruments, automation and lab workflow software with NVIDIA's computing: edge hardware such as DGX Spark, RAPIDS for analytics, and real-time inference and foundation models including the BioNeMo Open Models. Kimberly Powell of NVIDIA states the loop the release describes, experiments improving models and models designing experiments; Julie Sawyer Montgomery of Danaher says AI is reshaping how science is done. Initial efforts cover a select group of priority instruments.

Why it matters: Danaher sells instruments that sit in a great many labs, so where its boxes compute matters: an autonomous lab needs the measurement and the inference close together, and edge hardware at the instrument is one way to get there. The release names the parts rather than a product. It stays an intention until something ships or a customer says what changed.

Evidence and limits: No money, no equity, no timeline and no product. Which instruments are in the select group is not named, the wider portfolio is only a possibility, and the Cosmos world models and Omniverse digital twins are described as being explored. NVIDIA has issued no release of its own. Danaher's separately announced autonomous antibody lab is still at the plans stage, expected to run at scale in early 2027.

Danaher ↗

Scimplify, which develops specialty-chemical processes in its own labs and coordinates 500 partner plants with agents, raises $25M led by Hitachi Ventures

What happened: The Bengaluru company, founded in 2023, takes a customer's material requirement, develops the manufacturing process with its own scientists in Bengaluru and Hyderabad, and moves it to one of more than 500 partner factories. Its platform, Scinode, runs separate agents for research, manufacturing and quality that help coordinate the work, picking routes and plants and tracking regulation. The all-equity round was led by Hitachi Ventures, with customers Henkel and Teknor Apex as new investors and Accel India, Bertelsmann India Investments, Omnivore and 3one4 Capital following on.

Why it matters: The money is going to the step after discovery: a material counts only once someone can make it to spec, and that is where months turn into years. Co-founder Sachin Santhosh says that in some cases a job that would normally take 12 to 18 months has gone from a customer's requirement to delivered material in two. About $7.5M of the round goes to expanding in the US, including a manufacturing network there, and $2M to Scinode. Two of the new investors buy from the company, which is one way to read what they are paying for.

Evidence and limits: The $250M post-money valuation comes from a person familiar with the deal, not the company, which declined to give one; TechCrunch alone reported the round, with Santhosh on the record, and no release was found. The revenue run rates, the two-month timeline, the customer names and the $80M total raised are all the company's own figures. This is manufacturing coordination with agents, not a claim that AI found any of the materials.

TechCrunch ↗

Google Research folds only the patch a designed protein binds, cutting 88% of the GPU time for a 719-residue enzyme and getting single-digit nanomolar binders

What happened: Across 15 targets and 3,666 designs, folding only the contact shell plus a margin reproduced the full target's interface to a median 0.37 angstrom, and cut GPU hours by 88% on the 719-residue outer part of fibroblast activation protein alpha. With a researcher setting the strategy and a Gemini 3.1 Pro agent choosing the crops and parameters, the in-software hit rate rose from 5.06% to 9.33% while saving a further 42%. Yeast display then gave four clones at apparent 3.0 to 9.1 nM.

Why it matters: AlphaFold3 charges by token bucket, so most of the compute in screening designs goes on target residues far from the binding site, and a big outer domain is what makes a target impractical to design against. The paper treats cropping as something to test rather than a free saving: whether the interface geometry survives, whether the ranking that separates binders from non-binders survives, and whether the saving crosses a bucket boundary. Left to pick its own strategy from a map of the whole target, a fully autonomous arm converged on the same catalytic-rim approach the researchers had specified.

Evidence and limits: Cropping cost ranking: mean interface ROC-AUC fell from 0.777 to 0.729, and on one target the ranking collapsed, recovered only by dropping the target's alignment, which helped deep alignments and hurt a shallow one. Seven of the 15 targets were small enough to gain nothing. Affinities are apparent values on the yeast surface, not purified protein; one target carried both the wet lab and the agent arms, nobody outside repeated it, and this is a technical report.

By Jun W. Kim, Annalisa Pawlosky

Google Research report ↗

Zealand Pharma pays Generate Biomedicines $30M upfront to design multispecific proteins for obesity

What happened: Generate takes $30M upfront, up to $35M in early preclinical milestones and milestones of nearly $1.2B in all, plus tiered royalties, for two initial programmes with an option on a third. Generate runs research through lead-candidate selection; Zealand takes clinical development, regulatory filings and worldwide commercialisation. Utpal Singh, Zealand's chief scientific officer, says proteins complement its small molecules and peptides; Mike Nally, Generate's chief executive, says the teams will define the target profile first.

Why it matters: Obesity is where the metabolic money is, and Zealand is buying protein design rather than building it: its own 25 years are in peptides. For Generate it is the third pharma collaboration after Amgen in 2022 and Novartis in 2024, and the first since it listed on Nasdaq in February, which is the kind of revenue a newly public platform company needs.

Evidence and limits: The $1.2B is what could be paid if programmes reach development, regulatory and commercial milestones; $30M is what is paid now. No target, candidate or data is named, and the work starts at design.

↳ Generate's Nasdaq listing in February Generate:Biomedicines prices a $400M Nasdaq IPO
Generate release ↗

Albert raises a $55M Series B led by TCV for AI that searches and reasons over chemical companies' own R&D data

What happened: New investors Delta-v Capital, Socium Ventures, HighSage Ventures, Coral Capital and Legion VC joined, and Coatue, J.P. Morgan Growth Equity Partners, Index Ventures and Applied Ventures followed on. CEO and co-founder Nick Talken says the money expands Albert's chemistry AI; Morgan Gerlak of TCV spoke for the lead. The partners the release names include AkzoNobel, BASF, Henkel, Kenvue and Clorox.

Why it matters: Albert sells to the makers of coatings, adhesives and consumer goods: AI that searches their own formulation records, suggests candidate formulations and designs experiments, rather than discovering new molecules. The evidence that its model helps is Albert's own: a white paper says that on the hardest set of a benchmark Albert built, its retrieval model Valence put the right passage from about a million drawn from US patents in its top 100 results 81.8% of the time, against 2-4.5% for OpenAI and Voyage models. No valuation was given.

Albert release ↗

Gamow Labs' AI pipeline re-reads 26 hard newborn lung-disease genomes blind, matches all 19 solved cases and finds a rearrangement in an unsolved one that Baylor confirms

What happened: Pawel Stankiewicz's lab at Baylor College of Medicine gave Gamow Labs de-identified whole genomes from 26 infants whose lung disease first-line labs had not diagnosed; the lab had solved 19. Gamow's George-0.1 pipeline, built on frontier models including Gemini 4 Argon, matched all 19 and flagged candidates in 2 of the other 7. In one, read evidence pointed to a balanced translocation separating FOXF1 from its enhancer, consistent with alveolar capillary dysplasia; Sanger sequencing in Stankiewicz's lab confirmed it.

Why it matters: The step forward is that a candidate the AI proposed went on to be confirmed in a lab: Baylor's own sequencing verified a chromosomal rearrangement that had gone undiagnosed for three years. That is the step from flagging a variant to a diagnosis a family can act on.

Evidence and limits: It is a small study, 26 cases, disclosed by the company in a post rather than a paper, and the outcome of the second candidate is not given. Argon is one of several models in the pipeline, so the result belongs to the pipeline, not to Argon alone.

By Daniel McKinnon

Gamow Labs ↗

Google opens Gemini 4 Argon to all, publishing science case studies and a free-access plan for scientists

What happened: On 13 October Google opened Gemini 4 Argon to developers, enterprises and eligible subscribers, and invited 10,000 scientists to apply for six months of free access to Antigravity's top usage tier. Its science case studies cover enzyme design, quantum computing, fusion research and rare-disease genome analysis.

Why it matters: What stands out is less the model's scores than frontier AI beginning to leave traceable results in different research workflows. The fusion work has a public preprint, and the speed-up of the quantum chemistry package xTB has code submitted to its repository; Gamow Labs reports that its AI pipeline found a previously undiagnosed chromosomal rearrangement, which a partner lab confirmed by sequencing.

Evidence and limits: The cases rest on different kinds of evidence. The fusion paper is still a preprint; the three xTB pull requests are open, not merged, and a submission is not an independent check of the speed-up; Gamow's study is the company's own account, and Argon is one model in a multi-model pipeline. The enzyme activity and some quantum results lack public material an outside group could check.

Google ↗

Undecimal Bio, spun out of Eleven Therapeutics, launches with an $18M seed to find molecules that carry siRNA drugs to tissues beyond the liver

What happened: 4BIO Capital and IQ Capital co-led the oversubscribed round, with Verve Ventures, Harel Tech, Entree Capital, Kerna Ventures and Saras Capital. Its DELiveri platform screens large combinatorial libraries of candidate ligands in cells that report when siRNA actually gets inside, and AI agents read the resulting structure-activity data to pick conjugates. The money is for the platform, its first kidney and blood-vessel programmes, and hiring at its labs in the Cancer Research UK Cambridge Institute. Yaniv Erlich, chief executive, and Shaul Ilan co-founded it.

Why it matters: siRNA drugs work mainly in the liver, because a ligand that liver cells take up is known; finding one for other tissues has been slow, the company says. Undecimal treats that as a data problem: measure delivery in cells at scale, then train models on the screens. The release calls the platform validated in animals and mentions undisclosed collaborations with large drug companies, but shows no data, names no partner and gives no valuation.

+1Business Wire ↗

Same force error, different rates: a preprint bounds how far a machine-learned potential can get a reaction rate wrong, using single-point energies on reaction paths

What happened: Xiyao Yu of Nanyang Technological University shows that the usual test, force error on equilibrium snapshots, barely sees the barrier region that sets a rate, so worst-case rate error grows exponentially with barrier height. Weighting energy errors by a 'leverage density' concentrated on reaction paths instead gives an estimated interval for the rate. In alanine dipeptide, five designed perturbations of matched force error changed the rate 0.49 to 3.5 times; in Li3OCl the intervals ordered six models' ion-hop rates, but five measured rates sat about 7% above the upper end.

Why it matters: Machine-learned potentials are judged by force error but used to compute diffusion and reaction rates. This offers a check costing a few hundred reference energy calculations, reported as two numbers beside force error, and picking training data by it cut rate errors even as force errors rose. The Li3OCl agreement holds only once hops are sorted by mechanism; on the pooled set the intervals do not track. Every rate tested against is the author's own simulation, not experiment, in an unreviewed single-author preprint.

By Xiyao Yu

ChemRxiv ↗

Tianxu Intelligent Technology raises tens of millions of yuan for a wind-and-solar weather model and satellites of its own, with Houxue Capital the only investor

What happened: Houxue Capital invested alone in the Pre-A+ round; Yirong Capital is the long-term exclusive financial adviser. The money goes to the Ningkong satellite constellation, to the CMA-WSP-AI energy weather model and a sector world model, to hiring, to key customers and to groundwork abroad. Founder Li Liu has a meteorology doctorate from the University of Chinese Academy of Sciences and started the company in Jiaxing in October 2024. It sells weather data, a power-trading platform and deployments inside the customer's own network to generators and to both state grids.

Why it matters: The weather models on this record come from large labs. This is a small company selling one slice of one: wind speed and irradiance, the two variables that set how much a wind or solar plant generates, and so what it earns in China's power market. Its answer to the data bottleneck is to make the data itself, by putting the model on satellites: one has been in orbit since July, with 18 planned.

Evidence and limits: The performance figures are the company's own and unpublished: it says its 1km wind forecasts beat EC-HRES and AIFS on error and correlation, and that it came first in a four-event extreme-weather AI contest, with scores 39.6% to 351% above the baseline method. The amount is given as a range rather than a figure, so none enters the totals, and no valuation was given.

36Kr ↗

Drylab AI raises a $3M seed led by Vertex Ventures Southeast Asia & India to run computational biology analyses as agents inside a customer's own machines

What happened: The Singapore company, founded in 2025 by John Phan, from AI research at ByteDance's Seed team, Huy Phan, formerly of Landing AI, and Nhi Nguyen, a biomedical PhD candidate at Nanyang Technological University, raised $3M led by Vertex Ventures Southeast Asia & India with PatSnap. Its agents plan an analysis, pick from over 800 tools and databases, get the compute and work through failures, while a model of its own checks each analytical decision and flags method errors. It runs on the customer's own machines.

Why it matters: The bet is on where agent work in biology actually gets blocked in a drug company: not the model, but whether the analysis can run on data that cannot leave the building, and whether a method error gets caught before someone acts on it. The company has been selling since February 2026, so the claim is about deployment rather than a demo. Genping Liu, the Vertex general partner who spoke for the firm, put the deal as Vietnamese technical talent going global.

Evidence and limits: No customer is named, no revenue given, and nothing has been published on how well the checking model catches method errors or how often the agents' analyses are right.

↳ Funding record Drylab AI · Seed · $3M →
e27 ↗

A Stanford verifier that hunts for errors in AI maths proofs roughly halves the invalid solutions a human must read, and reports real mistakes in 11 OpenAI preprints

What happened: Fan Nie, Haotian Ye and colleagues split verification into proposing candidate errors and then judging whether each is real, with the threshold set so that almost no valid proof is wrongly rejected. Across three maths benchmarks that cuts the invalid solutions a reviewer must read by 46% on average against a voting baseline at the same false-rejection rate, and by 57% once the validator is trained. Pointed at Xinwen Zhu's 2017 Annals of Mathematics paper, it reported 45 issues where the same model reviewing directly found 11.

Why it matters: Expert review becomes the scarce resource once a solver produces more candidate proofs than anyone can read, and this treats that capacity as a budget: reject as much as possible while letting through almost every valid proof. The authors of the papers it checked confirmed the errors and revised. Paired with a solving agent it also helped settle three open conjectures in relative Langlands duality, which experts then confirmed.

Evidence and limits: The 11 preprints' main conclusions hold after the corrections. The confirmations come from the papers' own authors, and for the preprint credited with 88 issues one of them is Shurui Liu, an author of this paper; he also wrote up the three Langlands proofs, co-wrote the Manin constant paper and co-wrote the solver OSVerify is paired with. No formal proof checker is used anywhere.

By Fan Nie, Haotian Ye

arXiv 2610.18089 ↗

Nine agents write 135 follow-up papers to order for national-lab scientists; a judge finds 114 of them fail an integrity check

What happened: Carnegie Mellon, Minnesota and Stanford researchers asked ten scientists now or formerly at five US Department of Energy labs for an unpublished follow-up direction from their own work, plus the conditions a paper on it would have to meet. Nine agents each wrote 15 follow-ups across quantum computing, plasma physics, computational chemistry, materials and scientific machine learning. Graded against those conditions by an automated judge, none of the 135 met all of them, and 114 failed the integrity rubric. Six of the nine agents had no submission pass it.

Why it matters: The failures are not mostly about capability. The commonest flags are a paper that does not match its own code (90 of the 114), numbers contradicting the recorded evidence (85), and work claimed but never done (68). So an evaluation that reads only the write-up cannot tell a finished result from a described one, and an internal benchmark of research throughput needs the logs checked against the conclusions. The scientists' conditions are written before the work, which is what makes grading possible without a reference answer.

Evidence and limits: The grading is itself an agent's, GPT-6-Astra run four times per submission, and GPT-6-Astra is one of the nine agents graded, and the best of them on every column. The authors check it against experts: the rubrics cover 96.97% of the weaknesses reviewers raise and agree with them on 80.34%, but on scientific quality and impact agreement falls to 68.68%, and the authors say that part still needs expert verification. Fifteen research problems, all with computational experiments. A preprint.

By Seungone Kim, Graham Neubig, Sean Welleck

+5arXiv 2610.19159 ↗

DeepSeek is in talks to lead a seed round for Winverse AI, a robot-AI startup founded by former Tencent scientist Han Hu, Bloomberg reports

What happened: Bloomberg, citing people familiar with the matter, says the round is worth tens of millions of dollars and would value Winverse at about $400M after the money, with Meituan's Long-Z Investments also committed. The deal is not final and its terms could change. Han Hu founded Winverse this year after leading Tencent's vision-language and embodied foundation model teams; he was earlier a principal researcher at Microsoft Research Asia. The company is still in stealth.

Why it matters: It shows a model lab putting money into the AI that lets robots act, not only into robot hardware: DeepSeek already took a stake in Unitree when the humanoid maker listed in Shanghai. Bloomberg's point is that China builds robot bodies well, while the models that turn instructions into reliable actions lag. Nothing has closed, none of the parties commented, and Winverse has shown no product or result.

Bloomberg, via The Next Web ↗

Matter Machine, a Liverpool spin-out searching for inorganic crystals, raises a GBP 4M pre-Series A led by IP Group, and Oxford Nanopore's Gordon Sanghera joins to lead its commercialisation

What happened: Matt Rosseinsky of the University of Liverpool's chemistry department founded the company. It sits in the university's Materials Innovation Factory and pairs AI prediction with experimental and characterisation expertise, aimed at inorganic crystals for batteries and catalysts. IP Group led the oversubscribed round, with Northern Gritstone, the University of Liverpool Enterprise Fund, Norrsken Evolve, LYVA Labs and the Parkwalk-managed Northern Universities Venture Fund alongside. The money is for the team, the platform and commercial partners.

Why it matters: Matter Machine represents a different commercial route for materials AI: pairing model predictions with a university's existing synthesis and characterisation capability. Its founder's Liverpool lab has repeatedly made new materials that computation pointed to, and the round adds an executive the release says helped build Oxford Nanopore.

Evidence and limits: The round funds the team and the platform. The company has not yet published material data of its own from which its technology could be judged.

University of Liverpool release ↗

Britain extends its use of frontier AI to find holes in government systems, and says it will explore reporting duties for serious AI incidents while work begins on responding to ones involving AI agents

What happened: Four departments and agencies say pilots have helped identify and fix over 1,000 potential vulnerabilities in government systems, and the programme will grow. The government will explore using the Cyber Security and Resilience Bill to have serious AI incidents and near misses identified and reported, and to cover loss-of-control risk, where autonomous systems evade human oversight. The AI Security Institute and the National Cyber Security Centre are already looking at how to respond to incidents involving AI agents. AI Minister Kanishka Narayan announced it.

Why it matters: AI safety governance is extending from testing models before release to reporting incidents and responding after deployment. That matters for the science agents the record follows, which are starting to run code and lab equipment on their own.

Evidence and limits: The vulnerability pilots are already running, and the 1,000 figure is the government's own, with no method or model named. Mandatory reporting of serious incidents is still being explored, with measures to be worked through with parliamentarians, technical experts and operators.

GOV.UK ↗

AriadneX splits a powder diffraction pattern into the phases already known and what is left over, to point chemists at the samples holding something new

What happened: Zhuoran Yang, Vladimir V. Gusev, Matthew J. Rosseinsky and colleagues at Liverpool write it as a mixed-integer optimisation under crystallographic constraints: fit each pattern from a library of known phases, then rank samples by the signal left unexplained. Hide one of four known phases and the samples holding it rank near the top: all ten for SnO2, 11 of 14, 12 of 16, 16 of 18 elsewhere. On 31 patterns from a past Ba-Y-Si-Ru-O campaign, the leftover signal reproduced the main reflections of the two phases that campaign found.

Why it matters: High-throughput and autonomous synthesis produce more diffraction patterns than experts can read. AriadneX does not identify new crystals; it picks out, from many patterns, the samples most worth an expert's look, and shows what their unexplained peaks look like.

Evidence and limits: The results come from retrospective tests on data whose answers were known; the open-world test is one campaign of 31 patterns, assigned afterwards by the same group's experts. The next step is a new synthesis campaign showing it actually cuts expert analysis time. The code is MIT but needs Gurobi and licensed structure databases.

By Zhuoran Yang, Vladimir V. Gusev, Matthew J. Rosseinsky

ChemRxiv ↗

Where in a transcript an RNA sensor should bind: a model trained on 7,383 measured sensors picks working target sites in a virus gene it had never seen

What happened: Jihoon Han and Seth L. Shipman at the Gladstone Institutes and UCSF tiled six RNA targets at single-nucleotide steps, measured all 7,383 sensors, and trained a model that compares two candidate sites rather than scoring one. Held-out transcripts: its top sites were enriched for high-performing sensors. Frozen and run on the SARS-CoV-2 N gene in E. coli, with that transcript supplied alongside, 4 of its ten top sites gave working sensors against 0 of 20 random ones by qPCR, 5 against 2 of 20 pooled.

Why it matters: Toehold switches can be programmed for any RNA, and most work has gone into the switch itself; where in the transcript to aim has had far less, though the authors find neighbouring sites differ nearly as much as random ones. The gain comes from a base-pairing rule in the sensor stem that transfers between transcripts. Numbers this small (4 of 10, one transcript, one lab) measure enrichment, not a design rule. Toehold-VISTA, which works in its own setting, did not rank these sensors; the authors leave open whether the architecture, the readout or both explain that.

By Jihoon Han, Seth L. Shipman

bioRxiv ↗

A Brucella vaccine candidate designed from predicted epitopes raised cytokine release and shifted T-cell subset proportions in donor blood cells, with no animal protection test yet

What happened: Xuanji Zhang and colleagues at Xinjiang Medical University's First Affiliated Hospital picked 16 cytotoxic T-cell, 10 helper T-cell and 3 B-cell epitopes from the Brucella proteins Omp28 and GroEL, using Xinjiang HLA frequencies, and linked them to a dendritic-cell-targeting peptide. AlphaFold3 predicted its structure, docked to MHC molecules and TLR4. Expressed in E. coli, it bound antibodies in patients' serum. Donor blood cells given it averaged 145.5 pg/mL of interferon-gamma and 87.53 of interleukin-4, against 10.91 and 12.03 untreated and 66.84 and 54.44 without the peptide.

Why it matters: Epitope-prediction papers usually stop at the computer, and this one goes a step further: the designed protein was made and put in front of human cells. What the cells show is a reaction, not protection. No animal was infected, so efficacy is untested, and the authors say so. Five donors a group for the cytokines and three for the T-cell subsets, one region's HLA profile, and surface staining alone, which the paper notes cannot show the T cells responded to this antigen rather than to anything else.

By Xuanji Zhang, Yuejie Zhu, Fengbo Zhang

Scientific Reports ↗

The ART preprint lands, and reports that ten reruns of the same agent campaign all reached the locus and none saw the repeat array

What happened: Peter H. Yoon, Nicholas T. Perry, Matthew G. Durrant and colleagues at Anthropic put the September announcement on bioRxiv. Claude Code workers and supervisors surveyed reverse transcriptases across 1.9 billion protein clusters in 949 sessions and 119 tasks, 98 of them opened by the agents, over 21.5 hours with nobody stepping in. In phage SA1 infection, RNA from the array reaches 8% of phage transcripts 15 minutes in. The authors then reran the campaign ten times: nearly all reached ART loci, none read the DNA upstream, none found the array.

Why it matters: It shows a weakness of science agents that is easy to miss: being able to analyse evidence is not the same as going and finding it. With the DNA in the prompt, the four strongest Claude models described the array in at least 90% of attempts; when they had to open files themselves, as few as 32% did. How tools and data are put in front of a model decides whether a discovery happens.

Evidence and limits: In ten reruns of the full campaign the agents reached the locus but none read the DNA upstream or found the array. Whether the original find was Claude's alone is disputed, and the preprint does not address that.

By Peter H. Yoon, Nicholas T. Perry, Matthew G. Durrant

↳ Related commentary The ART announcement and preprint
bioRxiv ↗

Twenty-three ways of deciding when to trust a chemistry model are scored against held-out error: the model's own uncertainty cuts error by 65%, the best similarity measure by 32%

What happened: Ivan Zlobin and colleagues at the Russian Academy of Sciences' Kurnakov Institute predicted which of two metals a ligand binds more strongly, from 88,525 selectivity values the authors derived from the Critical Materials Institute's compilation, holding out whole ligands rather than rows. Keeping the safest half of predictions, the model's own predictive uncertainty cut mean-of-pairs error by 65%, the best descriptor-space distance by 32% and the best ligand-only distance by 18%, while fingerprint nearest-neighbour and learned-embedding distances ordered error no better than chance.

Why it matters: An applicability domain is usually asserted: a prediction is called reliable because the molecule resembles the training set. Here that assumption is tested against held-out error, and similarity mostly fails it while the model's own uncertainty holds up. The same split reframes the published model for this compilation: its reported 0.599 mean absolute error on binding strength reproduces, but that test set shares 94% of its ligands with training, and a ligand-disjoint retrain gives 1.484. One task, one compilation, and the selection exercise replays fixed data rather than running an experiment.

By Ivan Zlobin, Alexander Pavlov

ChemRxiv preprint ↗

Scinetics releases Chain of Structures, where a language model plans an enzyme in four steps and a protein generator builds each step before the next is written

What happened: Qingran Cai and five colleagues at the company, with founder Zaixi Zhang at HKUST corresponding, pair a reasoning language model with an all-atom protein generator. From the reaction the enzyme should run, the reasoner writes four rounds (the amino acids that do the chemistry, the pocket around them, the chain's shape, then sequence and structure), and each round steers the generator, whose output becomes the next round's context. The preprint reports it ahead of the baselines compared on five of six measures.

Why it matters: This is the company's first public method since its first round in September, and it ships with the weights and the scripts that produced them, so the procedure can be inspected rather than taken on trust. Its design choice is to make the model think in structures: each step has to be built as a structure before the next one is written, instead of a chain of reasoning that stays in text.

Evidence and limits: Everything here is computed, and the headline numbers are narrower than they read. The 57.0% is a predictor's enzyme-function code for the design overlapping the target's at three levels, on the 2,435 test proteins shared with the baselines; the authors' own script says all 2,801 score about 8 points lower. The 0.729 TM-score refolds the design's sequence against the model's own structure, not a real enzyme. Nothing was made or assayed. The weights are Apache-2.0, the code carries no licence.

By Qingran Cai, Zaixi Zhang

bioRxiv ↗

Litai Zhiyao raises a seed round of nearly 50M yuan to design peptide drugs with generative models

What happened: iFlytek Ventures and the L2F fund co-invested with an industry investor the announcement does not name; no lead is named and no valuation given. The money goes to renting compute, core pipeline R&D, patents, hiring and operations. The Beijing company runs a platform-plus-pipeline model: partner work now, its own oncology, autoimmune and metabolic programmes later. L2F's Xuequn Huang is the one who describes the design space reaching mirror-image D-peptides. Founder Yinjun Jia, Jingming Xu of iFlytek Ventures and Xuanle Zheng of L2F also spoke for it.

Why it matters: Peptides sit between small molecules and antibodies, which is why a generative model has room there, and D-peptides are a space no natural library covers. What the announcement shows is money and intent: it says some partner projects have reached preclinical work, names none of them, and shows no designed molecule or assay. Compute rental heading the use of proceeds is the honest shape of an AI-native drug startup's first round: the model is the asset being bought.

PEdaily ↗

BIOTREE raises nearly 100M yuan in a Series B, positioning its single-cell omics data as training material for virtual-cell models

What happened: China Securities Capital led alone; Qiming Venture Partners, which led the 2022 Series A alone, followed on. No valuation and no cumulative total. The Shanghai company, founded 2012, runs mass-spectrometry metabolomics and proteomics as a service. The money goes to omics plus AI-for-Science R&D, single-cell and spatial metabolomics and proteomics products, a mass-spectrometry capacity centre in Zhejiang, and a Singapore headquarters with labs in Europe and the US. Founder and CEO Junliang Deng and Qiming's Xubo Hu spoke for the round.

Why it matters: The claim in this round is about data, not models: Deng calls his single-cell metabolomics the natural fuel for AI virtual cells, and says it answers a diversity problem those models have. That is a seller's description of a gap, and nobody has shown a virtual-cell model improving on metabolomics it was short of. What is checkable is the spend (capacity, products, overseas labs), which is what a service company does when it decides the scarce thing is measurement, not compute.

PEdaily ↗

Random forests trained on 105 lab specimens predict how swapping crushed stone for natural gravel weakens asphalt, and place the steepest loss between 12% and 16% gravel

What happened: Mohamed Ragab, Mostafa M. Arnaout and Mokhtar F. Ibrahim of Suez University replaced 0% to 24% of the crushed dolomite in an asphalt mix with rounded natural gravel and measured Marshall stability, flow, indirect tensile strength and wheel-tracking rut depth. From 0% to 24%, stability fell from 2,890 to 1,940 lb and rut depth after an hour rose from 4.2 to 9.7 mm. Random forests fitted to the 105 measurements scored test R² above 0.95 with errors under 2.5%, and SHAP ranked gravel share far ahead of every other variable.

Why it matters: It shows what explainable machine learning can add to a small materials experiment: the model's predicted step-by-step changes put the sharpest loss in flow, rut depth and tensile strength between 12% and 16% gravel, a threshold the authors suggest checking in the lab, since no new specimens tested it. The accuracy says little beyond this setup: seven gravel levels from one source, one binder, one gradation, and gravel share alone correlates between 0.95 and 0.97 with each of the four results.

By Mohamed Ragab, Mostafa M. Arnaout, Mokhtar F. Ibrahim

Scientific Reports ↗

TypeSafe AI raises an $870M Series A at a $7.5B valuation for Jev, a model that hands software typed decisions instead of text

What happened: Andreessen Horowitz led; Sequoia Capital and existing investor DCVC joined, and Martin Casado of a16z joins the board. CEO Diogo Almeida worked on RLHF and InstructGPT at OpenAI and was at Google Brain; his co-founders are Sasha Sheng, a former research engineer at Meta FAIR, and Erik Gafni, who founded Ravel, an AI company for DNA sequencing. TypeSafe came out of stealth on 15 September with a $40M seed led by DCVC.

Why it matters: Jev writes no text: it answers yes or no, picks an option or gives a score, each with a probability, and by TypeSafe's and a16z's own figures is one to two orders of magnitude faster and cheaper than frontier chat models at this. a16z calls it the first of a new class of models built to be called by code, not talked to, a bet that decisions in software reach further than chat. Neither names a science use; ranking candidates or checking an agent's work is where it could reach a lab, and nobody has shown it.

TypeSafe AI ↗

GSK takes Chai Discovery's design models across its pipeline after its own lab found binders to every target it tested

What happened: Chai Discovery announced a collaboration giving GSK access to its protein folding and design models for discovery across GSK's pipeline. It follows an evaluation in which Chai's models designed molecules for GSK targets without target-specific training, and GSK's own wet lab found binders to all the targets it tested. Christopher Austin, GSK's head of R&D technologies, said the models complement GSK's internal ones, which it retrains on its own lab data. No financial terms were given.

Why it matters: It is Chai's sixth drugmaker deal on this record this year, after Lilly, Pfizer, Novartis, argenx and BMS, and the release says GSK ran the wet-lab test itself before widening the deal. That makes the check external, but it gives neither the number of targets nor any binding figure: the designs bound, and GSK calls the affinities strong without a number. In January GSK also licensed Noetik's tumour models, so it is buying outside models while training its own.

Chai Discovery release ↗

A general chatbot, given formation energies as feedback, found 96% of a materials benchmark's low-energy compositions in 5,000 tries, more than twice what purpose-built generators found with the same budget

What happened: Hedda Oschinski, Christian Carbogno, Karsten Reuter and colleagues at the Fritz Haber Institute had GPT-5.4, with no fine-tuning, propose elpasolite compositions one at a time and fed back each one's formation energy from a precomputed set of machine-learned predictions. Targeting below -2.26 eV per atom, a class holding under 0.2% of the space, it found 3,577 of 3,740 targets in 5,000 proposals across three runs. With the same 5,000 attempts, the GAN, VAE and reinforcement-learning models it is compared against found 1,726, 1,511 and 1,569.

Why it matters: The gain comes from the loop, not the chemistry knowledge: asked for all 5,000 at once with no feedback, the same model did far worse. It reads its own growing history of hits and misses, which the one-shot generators it beats cannot do, and the authors say that asymmetry should be weighed when comparing. Everything happened in software against a lookup table. The paper is explicit that the figure is recovery of a region an oracle defined, not a count of stable or makeable materials, and that 262 of the target compositions contain noble gases.

By Hedda Oschinski, Maximilian L. Ach, Konstantin S. Jakob, Christian Carbogno

npj Computational Materials ↗

A neural-network potential proposed where the hydrogen atoms X-rays cannot see sit in a copper cluster, and the cluster itself drove a range of photocatalytic reactions

What happened: Xiaona Yang, Hui Shen and colleagues at Inner Mongolia University, the Qingdao Institute of Bioenergy and Bioprocess Technology and the Nagoya Institute of Technology made the copper-hydride cluster Cu13H6 in one pot at 21.37% yield on copper, and resolved the hydride positions with stochastic surface walking global optimisation driven by a neural-network potential, in the LASP code. The cluster oxidised alkyl aromatics and alcohols to ketones under mild light, and also drove defluorination, deuteriation, cyclopropane ring-opening and dehydrogenative coupling.

Why it matters: Hydrogen is nearly invisible to the X-ray diffraction these clusters are normally solved by, and pinning it down usually needs neutron diffraction and a large enough crystal. The paper's abstract twice says the computation only tentatively identifies the positions, so the structure stands as a joint computational and experimental inference, not a direct determination; the count of six hydrides, though, is settled by mass spectrometry. The chemistry either side of it is physical: the cluster was synthesised and the reactions run and measured.

By Xiaona Yang, Yunzi Xin, Xiaoyan Sun, Hui Shen

Nature Communications ↗

Ten GPT-5 setups were put on 161 clinical cases: thinking harder helped, running an agent made it worse, and search sank the weakest

What happened: Shaohui Zhang, Jing Huang and colleagues at Pennsylvania, Lehigh, Stanford and Children's Hospital of Philadelphia scored ten configurations on 161 cases drawn from the MedXpertQA benchmark, each with a narrative, findings, at least one image and a reference diagnosis. Accuracy rose with reasoning strength, 32.9% to 46.0%. Web search cut the routing mode from 38.5% to 26.7% while the reasoning modes each gained a little. Agent and deep-research modes scored 36.6% and 29.8%, below the plain model, and deep research cited nothing in 29 cases.

Why it matters: It is the rare benchmark where added machinery is measured and found to cost accuracy, which is the opposite of how agent systems are usually reported. The failure labels come from GPT-5 reading each trace, with physicians confirming 827 of 928 labels on 51 cases, a check the paper says measured precision, not recall: images misread, evidence not integrated, no reasoning to audit. The cases come from an existing benchmark rather than a clinic, nobody was treated, and the top score is under half.

By Shaohui Zhang, Jiarong Qian, Kai Zhang, Jing Huang

+1npj Digital Medicine ↗

Oganov's group runs evolutionary crystal-structure search on a landscape that includes quantum nuclear motion, using machine-learned potentials to make it affordable, and recovers LaH10's observed cubic phase

What happened: Daniil Poletaev and Artem Oganov at Skoltech searched for LaH10's structure at 150 GPa and 300 K with USPEX, ranking candidates by a free energy that includes quantum anharmonic effects (SSCHA), which DFT alone makes far too slow. Potentials trained on the fly, the universal potential MatterSim-5m and DPA3 effective potentials trained on SSCHA data each found the cubic phase seen in experiments; MTP-based effective potentials did not. Of seven universal potentials, only MatterSim-5m relaxed a test structure correctly, and it needed fine-tuning to approach DFT accuracy.

Why it matters: Standard structure search ranks candidates at 0 K, and for LaH10 that picks the wrong answer: the same search with 0 K DFT chose lower-symmetry structures over the cubic phase at 11, 44 and 88 atoms per cell. The effective potentials made the 88-atom search affordable. The test is one compound whose answer experiment already gave, and direct SSCHA search still costs about a hundred times a 0 K DFT search, even with a universal potential.

By Daniil Poletaev, Artem R. Oganov

npj Computational Materials ↗

The National Hurricane Center leaned on Google DeepMind's AI model for Isaias from the first advisory, which called a Category 2; the storm made landfall near Destin, Florida, as a Category 2

What happened: From its first advisory on 6 October, when Isaias was still an unnamed depression, NHC forecast a Category 2 hurricane, shaping its forecast to match DeepMind's model, whose newest version is WeatherNext 3, CNN reported; many physics-based models then showed a weaker storm on a different track. That first discussion put the NHC track in best agreement with the DeepMind and ECMWF AI aids. Isaias peaked near 100 knots offshore, then landed near Destin, Florida, late on 9 October at 90 knots, east of where that first track pointed.

Why it matters: This is the model used in practice, not scored afterwards: NHC director Michael Brennan says 2026 is the first season WeatherNext is fully part of the centre's forecasting aids, after it guided last year's Hurricane Melissa call, and that NHC helped train it on its own best-track data. One storm is not a verification. The formal storm report comes months later, and the verdict that DeepMind's track was best so far comes from reporters and a TV hurricane specialist, not from NHC.

National Hurricane Center ↗

ARPA-H puts up to $28.6M into NATIVE-ID, a project to measure how 50,000 proteins clump in cells and train AI to predict it

What happened: NATIVE-ID, led by Brad Ringeisen of the Innovative Genomics Institute at UC Berkeley, is part of ARPA-H's BIOGAMI programme on harmful protein aggregation, run by programme manager Shannon Greene. Randal Halfmann's lab at the Stowers Institute gets about $4.1M over two years to take more than 10 billion single-cell aggregation measurements across 50,000 proteins in yeast. The team, with Brown, Emory, Johns Hopkins, Texas A&M and others, starts with frontotemporal lobar degeneration.

Why it matters: It funds the data before the model: roughly a third of proteins have no stable structure, so structure predictors say little about them, and the bet is that measured aggregation at this scale lets a model learn the sequence rules. The 10 billion measurements are still to come. This is Phase 1, datasets and models; testing therapies and earlier detection would come in a second 24-month phase.

Stowers Institute release ↗

An audit of Google's GNoME crystal data finds most predicted structures sit within 0.05 Å of a known crystal's geometry

What happened: Daniel Widdowson, Olga Anosova and Vitaliy Kurlin (University of Liverpool) and Tatiana Kurlina (UCL) compared every crystal in two public GNoME versions (384,938 entries in 2023, 554,054 in 2024) by continuous geometric invariants. Matching atom positions only, ignoring elements, 63-78% of entries lie within 0.05 Å of a crystal already in the ICSD or Materials Project, depending on database and metric. About a fifth contain radioactive elements. Of 1,133 groups of exact duplicates in 2023, 1,010 were deleted whole in 2024.

Why it matters: The audit reopens a basic question: in what sense is an AI-predicted material new? GNoME's 2023 Nature paper is the record's reference for how many new stable materials AI has found, and the audit argues a crystal within 0.05 Å of a known geometry should not count. Similar geometry does not mean the same composition or properties, so structural novelty, compositional novelty and whether a material can be made need to be judged separately.

Evidence and limits: The analysis is computational and not yet peer reviewed. Most near-matches carry different elements, so whether a new composition on a known framework counts as a new material is the point in dispute, not a settled finding.

By Daniel Widdowson, Tatiana Kurlina, Olga Anosova, Vitaliy Kurlin

arXiv 2610.13885 ↗

Prompteina designs all-atom protein structures from written prompts, and nine of its GM2A designs bind in the lab, the strongest at 107 nM

What happened: A University of Washington, Ai2 and NUS team, with David Baker among the authors, text-conditioned the Complexa structure generator on 1.8 million structures paired with 52.4 million captions, written by a language model from database annotations. It leads the baselines on 15 of 18 structural tasks and on at least 13 of 20 binder targets, raising a computed interface-confidence score 14% over the strongest. Against GM2A, which has no reported de novo binders, Adaptyv Bio assayed 89 designs picked from a thousand: nine bound, six below a micromolar.

Why it matters: A designer can now ask for a fold, a disulfide count and an interface size in one written sentence, instead of a separate input format per property. That matters most for the agent loop the paper tests: a language model researches a target, writes the specification in words, reads the scores and rewrites it, with no translation step into a model's own labels. The GM2A binders are what separate this from a benchmark result.

Evidence and limits: Binding is not function: Adaptyv Bio, commissioned by the authors, measured apparent dissociation constants by surface plasmon resonance, fitting eight of the nine, and nothing shows they do anything to GM2A. The paper's 6.7% hit rate counts the six sub-micromolar binders against 89 designs the authors picked from a thousand. The 14% and the task counts are the authors' own runs of the baselines, and the preprint is not peer reviewed.

By Joseph Lee, Pang Wei Koh

↳ Binder design conditioned on the target rather than on text AlphaProteo designs experimentally successful protein binders
+1arXiv 2610.13917 ↗

ACED-Bench scores agents on choosing the right experiment and knowing when to stop, with a hidden causal model supplying every answer

What happened: Yiwei Chen and colleagues at UC San Diego and Amazon put each task in a natural-language scientific scenario backed by a hidden probabilistic graphical model: a language model writes the readable surface, while code builds the causal graph, fixes the intervention semantics and computes the oracle answer, so runs are graded without human labelling. Agents get four turns to request observational or interventional samples. The main board is 180 tasks, with a separate 150-question yes/no check; seven current models, two older ones and three active agent designs were run.

Why it matters: Most science benchmarks hand a model the evidence and ask what it concludes. This one makes it decide what to collect. The paper's evidence ledger then says where a run broke: it tested the wrong intervention, lost evidence it had already won, or kept querying after the answer was supported. Those are the parts of an investigation that a final-accuracy score hides.

Evidence and limits: Every world is synthetic, with fully observed categorical variables and known intervention semantics, so no latent confounding, continuous variables, measurement error or open-ended experiment design. The authors say success here should not be read as readiness for real scientific or policy settings. Claude Opus 4.6 is both one of the evaluated models and the fixed parser between every agent and the simulator.

By Yiwei Chen, Rose Yu

arXiv 2610.14381 ↗

Roche and ETH Zurich let one model choose which borylation reactions to run, and a second, trained on the result, called where the reaction lands on ten new ring compounds

What happened: Mason Minot, Gisbert Schneider and colleagues at ETH Zurich and Roche had a tree-based model pick which of 22,253 Roche compounds to try in C-H borylation, a reaction chemists use to modify an already finished drug molecule. Three rounds tested 50 new substrates, taking the dataset to 6,865 reactions on 568 substrates, with site labels for 812. Graph neural networks trained on it then predicted the borylation site for ten unseen substrates, and the top-ranked site matched the experiment in all ten.

Why it matters: Reaction models for drug chemistry lack data, above all failed reactions and labels for where a reaction lands; this loop produced both, 106 negatives among them, and the data is public. The ten were run after the predictions, by the team itself, which is what makes it a test. The site model reads no reaction conditions, though ligand and solvent can move the site, and on unseen scaffolds the graph models scored only 0.43 to 0.50 MCC, where 1 is perfect, at telling whether a reaction works. The authors ask for more drug-like molecules: accuracy fell on the hardest.

By Mason Minot, David F. Nippa, Kenneth Atz, Gisbert Schneider

Nature Computational Science ↗

AstraZeneca trained a toxicity model on liver-cell proteomes, traced why some prostate-cancer degraders kill liver cells in a dish, and picked a near twin that did not

What happened: Shaon Basu, Kevin Moreau and colleagues at AstraZeneca, Charité Berlin and the Francis Crick Institute measured the proteomes of liver cells exposed to a library of 204 androgen-receptor degraders; the cells lack the receptor, so every response was off-target. A gradient-boosted model trained on them predicted toxicity (holdout AUPRC 0.78) and pointed to respiratory complex I. It scored AstraZeneca's compound 1 at 91 of 100 and two analogs differing only in the linker region at 47 and 35; those barely touched complex I and spared primary human liver cells.

Why it matters: Degraders join two drug parts, and the joined molecule can be toxic where neither part is; this catches that in cells before animals. The call was then tested with new experiments: cell respiration, an enzyme assay on heart mitochondria, and primary human liver cells: all cells and isolated enzymes, the team's own work, from one cell line and one target class. A 28-day mouse study, seven treated animals, showed the safer analog still shrank tumours, but had no liver endpoint, so it tests the drug and not the toxicity call. The analogs were already in the library.

By Shaon Basu, Kevin Moreau

↳ The same institute's wet lab in an earlier design result AlphaProteo designs experimentally successful protein binders
Nature Chemical Biology ↗

DOE picks four national-lab projects to build shared robotics testbeds for autonomous science: $30M in all, $2M of it in fiscal 2026

What happened: Argonne's MAESTRO is to build lab robots that improve with use; Brookhaven's DART tests when robot autonomy is reliable and whether its scientific results hold; Oak Ridge's TRACE links robots, instruments and AI agents through standard interfaces so a run can be repeated in another lab; SLAC's SPIRE, led by Angelo Dragone, brings autonomy to X-ray and electron facilities. DOE expects open software, reusable robot skills, benchmark tasks and datasets.

Why it matters: Most autonomous-lab money on this record builds one organisation's own lab. This is a federal bet on shared parts and on checking: one of the four exists to find where robot autonomy fails, another to make runs repeatable across labs. It is small beside the $159M of Genesis awards the same day, only $2M is set for fiscal 2026, and a selection is not yet an award.

+2US Department of Energy ↗

Shenzhen instrument maker OptoSeeker raises a Pre-A of over CNY 50M, and pitches its single-cell data to AI biology

What happened: Shenzhen Capital Group led; Guangdong's TCM health fund and Nanshan's strategic investment fund joined, and Lingyi Ventures followed on for a third round. OptoSeeker, founded in 2023 with Hainan Xie as co-founder and CEO, makes optoelectronic-tweezer systems that culture, test and pull out single cells across thousands of microchambers. Muyang He spoke for Shenzhen Capital Group. No valuation was given.

Why it matters: AI biology models lack data on how living cells behave over time, and instrument makers are starting to sell that data, not only the machines. OptoSeeker says its systems log each cell with time and position, and it has paired that data with BioMap's foundation model since July 2025. The round funds the instruments first; the data service is still being explored, and no dataset or model result has been shown.

OptoSeeker's own announcement ↗

Isomorphic Labs is in early talks to raise money at a valuation of at least $40B, five months after its $2.1B Series B, Bloomberg reports

What happened: People familiar with the effort told Bloomberg the round could value Alphabet's drug-design company as high as $50B. The amount, the lead and the terms are not reported, the financing has not closed, and Isomorphic did not comment. Demis Hassabis, who in August moved from running Google DeepMind to chairing it and became Alphabet's chief scientist, remains Isomorphic's CEO. The May Series B gave no valuation.

Why it matters: It shows what investors may pay for a drug-design engine before its own drugs have results: the record holds Isomorphic's pharma deals and models, and no clinical readout. It is talks, reported by unnamed people, so the figure can move or fall away; nothing here says the engine works.

Bloomberg ↗

Iambic sets its IPO at $15-17 a share, about $150M at the midpoint, and two investors signal interest in up to $60M of it

What happened: An amended S-1 offers 9,375,000 shares on Nasdaq as IAM, with J.P. Morgan, Jefferies, BofA and Citigroup running the books. At $16 Iambic expects $135M net, and about $75M of it goes to IAM1363, its HER2 drug: finishing Phase 1, then Phase 2 trials aimed at accelerated approval and a Phase 3. ARK, an existing investor, and Duquesne Family Office have indicated interest in buying up to $60M. Tom Miller, co-founder and CEO, and Fred Manby, co-founder and CTO, run the company.

Why it matters: The public market is asked to price an AI drug-discovery company on one drug's early data. By the filing's share count, the midpoint values it at roughly $760M, after $461.8M raised privately. Indications of interest are not orders, and the price is not set until the offering prices.

Iambic S-1/A ↗

Machine-learned potentials were run over 317,457 experimental crystal structures to find bad entries, and caught two nobody had reported

What happened: Justinas Slepavicius and colleagues at FTMC and Vilnius University, who run the Crystallography Open Database, relaxed its entries with universal potentials to test physical plausibility, a check that had relied on expert judgment. Of 522,086 entries, 317,457 passed a quality filter and were relaxed; 99.0% of those converged without a large volume change. Hand-checking 327 structures showed no single threshold on energy, force or displacement separates valid from invalid. On 524 hard cases, M3GNet distorts cyclopentadienyl rings and PET models do not.

Why it matters: The models disagree in ways that depend on chemistry, not on quality: each has its own blind spots, so a large change after relaxation can be the potential's failure rather than the structure's. The paper says its criteria are not calibrated against ground truth, so how many bad entries they miss cannot be estimated. Their own conclusion is to combine several models rather than trust one. Two coordinate errors they found, in CIFs rather than the original papers, are now corrected, and the relaxed structures are deposited so a reader can see whether relaxation confirms a published one.

By Justinas Slepavicius, Saulius Grazulis, Linas Vilciauskas

arXiv 2610.11246 ↗

A world model learns to skip ahead in atomic simulations by predicting which atoms move and how much time passed, with the physics bolted on as hard constraints

What happened: Ziming Pan, Kun Li and colleagues at Tsinghua's Institute for AI Industry Research train on simulator trajectory segments: kinetic Monte Carlo for three reactor pressure vessel steels, molecular dynamics for a Cu-Zr glass and a Li3N electrolyte. Per macro step, the model predicts a sparse set of structural edits plus the physical time elapsed. Edits are restricted to sites the teacher's rules can reach and species counts projected to stay conserved. Macro-step inference runs 1,000 to 10,000 times faster than event-by-event simulation.

Why it matters: The constraints are the result: on held-out steel the model violates reachability and conservation in no case and scores 0.91 on predicting which sites changed, while the same architecture without them keeps only 45.2% of edits reachable and 59.2% of counts conserved, and its clock drifts to 0.35 of the true elapsed time. But the ablation drops all three constraints at once, so which one earns what is unknown, and the teacher is a simulator rather than a measurement. A separate billion-atom comparison runs the baseline on a Sunway supercomputer and this model on A100s.

By Ziming Pan, Ruge Zhang, Haozhi Han, Kun Li

arXiv 2610.11527 ↗

Anthropic commits $150M over three years to the Genesis Mission, one of eleven company pledges the White House totals at $2.4B

What happened: Anthropic says the money will make Claude available to more than 15 agencies in the federal programme, naming NASA, the National Institutes of Health and the National Science Foundation. Over three years it will give Claude, Claude Code and API credits to several hundred Genesis Mission projects, partner with agencies and national labs on fusion energy and quantum computing, and train scientists on those projects. A White House fact sheet the same day lists it beside NVIDIA at $1B, AMD at $500M, OpenAI at $200M and Google at $150M.

Why it matters: The named deliverables are product access, credits and training, and Anthropic never says the $150M is cash; the White House totals the eleven pledges as science tools and compute credits, so the figure is a valuation of what is given, by whoever gives it. No agency has confirmed a share, Anthropic does not say which 15 it will serve, and the Department of Energy's own Genesis pages did not mention it the next day. Fusion and quantum are named as priorities to partner on, with no project, lab or date attached.

+1Anthropic ↗

Nine general-purpose atomic potentials were scored on how carbides stiffen and soften between 300 and 1200K, and most came out too soft

What happened: Miroslav Lebeda and colleagues at the Czech Technical University in Prague ran five binary and two high-entropy refractory carbides through stress-strain molecular dynamics with nine pretrained potentials, none fine-tuned, and compared them against published ab initio molecular dynamics from another group. MACE-MH-1 had the lowest mean absolute percentage error, 5.7%. Most models underestimate stiffness, with equilibrium volumes larger than the reference's. Errors track the metal, not the chemical complexity: 6.6% for ZrC against 20.1% for TaC, and the high-entropy carbides match their constituent metals.

Why it matters: Absolute stiffness and the rate of softening with heat are separate skills, and the paper reports them separately on purpose: a model can get the softening trend right while sitting at the wrong stiffness, so one averaged score hides which. The reference is another group's ab initio calculation, not a high-temperature measurement, so this says how well the potentials reproduce that calculation. The data is available from the authors on request rather than deposited.

By Miroslav Lebeda, Jan Drahokoupil, Simon Svoboda, Petr Vlcak

arXiv 2610.11878 ↗

Anthropic's new usage policy, effective 12 November, requires a person who can stop any machine its models drive, and exempts lab automation inside enclosed instruments

What happened: Where model output moves hardware without human approval, the policy now requires a qualified individual able to watch the equipment and stop it at any time, equipment that stops or holds a safe state if that person intervenes or the connection drops, and operating limits (speed, force, temperature, pressure, dose) enforced by the equipment or a controller independent of the model. It lists hazardous energy and materials and acting on the human body among the triggers, and excludes laboratory automation handling non-hazardous materials inside enclosed instruments.

Why it matters: The company's Model Hardware Standard, on this record since August, set out how Claude may drive lab equipment; this turns that into a rule with a date. The exclusion marks the boundary: an enclosed instrument with harmless reagents is out, a bench that heats, pressurises or dispenses hazardous chemicals at levels that could injure is in, and its limits must be enforced somewhere the model cannot reach. The policy sets no rule about how long an agent runs, despite how the update was framed.

Anthropic usage policy ↗

DOE funds 12 more Genesis Mission Phase II projects with $159M, from a fusion digital twin to enzyme design and autonomous accelerators

What happened: The department announced 12 Phase II awards totalling $159 million, taking Phase II to 14 projects; Darío Gil, its Under Secretary for Science, is the official quoted. Commonwealth Fusion Systems leads a digital twin of its SPARC device; UC San Diego will expand an RNA structure database five-fold for model training; the University of Washington works on sequence-structure ensemble modelling for enzyme design; Berkeley Lab's MOAT-Core is to run and design particle accelerators autonomously. MIT, Fermilab, Oak Ridge, Harvard and Argonne lead five of the rest.

Why it matters: Phase I was selection; this is money, and the list says which bets the programme is paying to build. Three of the twelve are the site's own beats (enzyme design, autonomous accelerator operation, inverse design of magnets), and the fusion digital twin puts a company's own machine at the centre of a federal project. None of it is a result: the release states no target any of these projects has to hit, which the earlier PNNL awards did.

↳ Related commentary Twenty-six challenges, or a few
+2US Department of Energy ↗

NVIDIA puts $1B over five years behind US science, the largest of the eleven Genesis Mission industry pledges

What happened: Jensen Huang announced it at the Science: A New Golden Age event in Washington on 8 October. NVIDIA describes the $1 billion as commitments over five years for super intelligence for science and for quantum computing, through higher-education research institutions, quantum investments and cloud providers serving government missions, and says it collaborates on several Phase II awards announced the same day. The release restates its existing DOE work: the department's largest scientific supercomputer at Argonne, and seven new systems across Argonne and Los Alamos.

Why it matters: The $2.4B of industry pledges to the Genesis Mission consortium is already on this record, and this is the biggest single piece of it. What the release does not say is what the $1 billion is: it is "commitments valued at" that sum, spread over five years and across three channels, with no figure for any of them and no cash changing hands on the day. Read it as a statement of where the compute will be pointed, not as a grant.

NVIDIA newsroom ↗

OpenProblemBench gives AI agents 82 open problems from mathematics and theoretical physics, and model judges rate GPT-6 Astra's answers solved 14% of the time

What happened: Kun Chen of the Institute of Theoretical Physics, Youjin Deng of USTC and colleagues collected 46 mathematics and 36 physics problems still open in the literature, with context and prior progress but no reference answers. Seven models worked offline, up to 12 hours each; four of them also judged every submission. GPT-6 Astra's mean judged solve rate was 14.0%, every other configuration under 8%. All four judges agreed on eight Astra solutions, seven of them physics problems; many physics items ask to extend a given construction.

Why it matters: A score on problems nobody has solved measures something benchmarks with known answers cannot, but every verdict here is a model's: the authors say expert review is still needed to show any 'solved' answer is correct or new, and that the judges agreeing does not estimate how often they are wrong. So 14% is a model-judged figure, not a count of new results, and the eight unanimous answers are where to check. HorizonMath and FrontierMath: Open Problems check answers with computational or problem-specific verifiers instead.

By Zhiyi Li, Kun Chen

arXiv 2610.11118 ↗

Academia Sinica researchers had Claude Code supervise model building and refinement for 24 cryo-EM and X-ray structures; re-refined cryo-EM models gained better geometry, and the researcher kept the final call

What happened: Kuen-Phon Wu and Chuan-Kai Chueh of Academia Sinica and National Taiwan University had Claude Code with Claude Opus 5.5 run Phenix, Coot, ModelAngelo and other established programs, read the validation and pick the next step, in about 36 hours on one workstation. On 15 deposited cryo-EM models the median MolProbity score went from 2.62 to 1.76 and clashscore from about 21 to 6. Three crystal structures built from diffraction data reached Rfree 0.182, 0.207 and 0.238, against 0.173, 0.197 and 0.229 published.

Why it matters: This tests an agent as a supervisor of existing programs, judged against the data each structure was measured with, not as a new refinement method. It did not win everywhere: CaBLAM outliers rose in seven of the 15 cases, one ligand fit its map worse, one in-house model was kept as deposited, and the crystal structures came close to the published ones without beating them. The investigator steered throughout, ligands and ions had to be supplied, and nothing was compared with human experts or other agents.

By Kuen-Phon Wu, Chuan-Kai Chueh

bioRxiv ↗

Claude derived, coded and fitted a new equation of state for polar fluids from a one-page brief; it fits ethers within about 1% and needs its polar term all but switched off for ketones

What happened: Werner Müller, Benoit Creton and Carlos Nieto-Draghi of IFP Energies nouvelles and Erich Müller of Imperial College gave Claude Opus 5 three papers and three prompts. Over three sessions it derived SAFT-VR IMP, wrote about 600 lines in the Julia package Clapeyron.jl with 97 verification tests, and fitted it to DIPPR data for six solvents. For the ethers and the sulfide, errors on the fitted data stayed within about 1%. The authors say none of its errors was caught by the researchers; its own tests caught them.

Why it matters: It is a derivation-to-fit chain a reader can check end to end, and the checks are real: exact reduction to the parent model, analytic limits, derivatives and the Clapeyron equation. But the 97 tests were written by the same model as the code, so they cannot catch a misreading of the physics that both share; the authors say auditing this much output is the real limit. And for the three ketones the data rejected the measured dipole: the fits only worked once the dipole was refitted to near zero, which removes the physics the model was built to add.

By Werner A. Müller, Erich A. Müller

ChemRxiv ↗

AutoDrude fits a polarizable force field straight from DFT, and catches the lithium transport in a polymer electrolyte that charge scaling misses

What happened: Artur Lyssenko, KyuJung Jun and Rafael Gómez-Bombarelli at MIT make the Drude relaxation differentiable, so bonded, electrostatic, polarization and screening parameters are fitted together against DFT energies, forces and dipoles, with no empirical tuning, at 1.20 times the cost of a fixed-charge simulation. On PEO-LiTFSI the dipole-constrained model matches the measured ionic conductivity about as well as the best charge-scaled model, 17% against 16% mean absolute percentage error.

Why it matters: Charge scaling is the standard way to fake the missing electrons, and on conductivity alone it still wins narrowly. The case for real polarization is what it gets that scaling cannot: the cation transference number in the dilute limit, its rise with salt concentration, and the absence of lithium-TFSI contact pairs at low concentration. A second result cuts against anyone fitting potentials: the variant that matched the DFT data more closely underestimated conductivity by up to an order of magnitude.

Evidence and limits: One polymer and one salt. Conductivity, the cation transference number and ion-pairing trends are all checked against published experiment, but the model reproduces only the dilute-limit transference and its rising trend, not its size: it flattens near 0.17 above 1.7 molal where experiment reaches about 0.5. Training is 5,942 DFT configurations of seven species, 10% held out, no separate validation set. A preprint, not peer reviewed.

By Artur Lyssenko, KyuJung Jun, Rafael Gómez-Bombarelli

arXiv 2610.12799 ↗

Computing the Coulomb repulsion from first principles takes about 40 K off Mg2IrH6's predicted superconducting temperature

What happened: Kieran Bozier and Chris J. Pickard at Cambridge compute the Coulomb parameter in the random-phase approximation for six hydrides and for the ambient-pressure metallic elements. For Mg2IrH6 they get 0.62, and a pseudopotential near 0.39, far above the 0.1 to 0.15 that Tc predictions conventionally assume; using it costs about 40 K against the standard 0.16. The parameter closely tracks the density of states at the Fermi energy, and its energy dependence accounts for a factor-of-two gap between two earlier Tc estimates for that material.

Why it matters: Hydride searches rank candidates by predicted Tc with this repulsion held at a number borrowed from elemental superconductors. If it instead rises with the density of states at the Fermi level, the ranking is skewed exactly where the field looks hardest, because a high density of states is also what makes a candidate look promising. The paper's answer is to compute the parameter, or to correct for the density of states, rather than keep one value for everything.

Evidence and limits: Six hydrides and one set of elements, all computed. Mg2IrH6, YSbH6 and LaSc2H24 are predicted materials with no measurement to check against. For H3S, where Tc has been measured, including the computed repulsion moves the prediction toward experiment, which the paper reports as a trend rather than a number. A preprint, not peer reviewed.

By Kieran Bozier, Chris J. Pickard

arXiv 2610.12563 ↗

A doubly metastable synthesis method makes four phases, three of which match no structure in the databases its authors searched

What happened: Kyuho Lee, Joseph G. Checkelsky, Heather J. Kulik and colleagues at MIT stack two metastable methods, diffusion and epitaxy, into diffusion-activated epitaxy: a substrate sits in a lower-melting flux and reacts at its surface while its bulk stays inert. In a narrow synthesis window they stabilised four distinct phases on oxide substrates, confirmed single-crystalline by X-ray diffraction and dark-field STEM. Three could not be matched to any structure in the experimental and computational inorganic-structure databases they searched.

Why it matters: Closed-loop materials discovery, from GNoME to DeepMind's robotic synthesis, mostly predicts stable structures first and then tries to make them. These three phases were made but sit outside the computed databases those predictions are drawn from, which is evidence that synthesizable space runs ahead of what the databases cover, so a predict-then-make loop misses metastable phases by construction. The paper's suggestion is a branch that makes first and solves the structure after.

Evidence and limits: The structures of the three unmatched phases are not solved: the claim is that no database structure fits their diffraction and microscopy, not that they are new, which would need a solved structure. One narrow window of one flux system, four phases. No AI method is used in the work; the bearing on predict-then-make pipelines is the reason it is recorded here. A preprint, not peer reviewed.

By Kyuho Lee, Joseph G. Checkelsky

arXiv 2610.13859 ↗

Brice Ménard uses Claude Science to build a full-sky ultraviolet map, a third of it predicted from other wavelengths

What happened: Brice Ménard, an astrophysicist at Johns Hopkins and Anthropic, had agents in Claude Science gather and cross-calibrate the public UV surveys, among them GALEX's 38,000 observations, and fill the third of the sky never observed in UV by learning how UV brightness tracks visible, infrared and radio maps, then add over 100 million Gaia stars. On measured patches hidden from it, the model came within about 10% of the real UV. Each pixel is marked measured or predicted, with an uncertainty.

Why it matters: A complete UV sky was missing because filling it takes weeks of pixel-level calibration that nobody puts first; here it took a few days of a scientist steering agents between his own projects. The map is a teaching tool, and the post's point is that most fields have a backlog of such resources that is now much easier to clear.

Evidence and limits: The predicted third is a statistical estimate, checked only against held-out patches that were measured; no new UV observation tests it. Ménard caught a calibration artefact that two rounds of agent review had missed, and the post cites no paper or outside review of the map.

By Brice Ménard

Anthropic ↗

Onyx Bio raises an $8M seed led by Dimension Capital to follow people's immune systems over time and turn the data into a model

What happened: Dimension Capital led; Haystack, Refactor Capital, Standard and Robot Ventures are among the others named. The Berkeley company, started in early 2025 by CEO Roger Chen and CTO Amit Lakhani, runs paid at-home studies on autoimmune disease and immune ageing. For each member it measures about 1,000 proteins, gene expression in single immune cells, metabolites and genetic variation, paired with clinical histories over years. Its launch post says nearly 1,000 people have joined (its home page counts 849), and every sample is processed in its own lab.

Why it matters: Biology models are mostly trained on snapshots: one sample, one data type, one moment. Onyx is building the opposite, the same people measured again and again as they get sick, take a drug or age, which is the data needed to ask why a treatment works for one patient and not another. The bet is on the data first: it says it works with research labs, AI model developers and drug companies to turn it into drug programmes.

Evidence and limits: The round is from the company's own launch post, which gives no valuation and does not say what the money is for beyond growing the data. No dataset, model or result has been published; the member count is the company's.

↳ Funding record Onyx Bio · Seed · $8M →
Onyx Bio ↗

Biohub, the US DOE and NIH, and Google DeepMind, Isomorphic Labs and Meta commit $1.8B to open data for virtual-cell models

What happened: Biohub's Virtual Biology Initiative, launched in April with $500M of its own, adds three blocks: DOE invests more than $500M over five years through the Genesis Mission, NIH brings datasets and repositories built with more than $500M of past federal money, and Google DeepMind, Isomorphic Labs and Meta put in $300M together. The goal is open, standardised data on how cells respond to interventions, across far more cell types. Alex Rives of Biohub, Max Jaderberg of Isomorphic and Pushmeet Kohli of Google DeepMind speak for it.

Why it matters: It bets that data is what holds virtual-cell models back, the same limit Xaira's X-Cell paper reports. The $1.8B is not all new money: NIH's share is past spending on data that already exists, and DOE's is spread over five years. No first dataset, date or access terms for the company-funded data are given. It shows where public and big-tech money is going, not that a virtual cell will work.

↳ The DOE programme DOE's share runs through The United States launches the Genesis Mission
↳ Related commentary The Biohub data push
↳ Related commentary The data under virtual-cell models
+3Biohub release ↗

Matchpoint Therapeutics raises a $150M Series B to take its oral covalent T-cell drug MPT-062 into the clinic in 2027

What happened: Nextech Invest and Norwest co-led; Invus, BB Biotech, T1D Fund and BOLD Longevity Growth are new, and Access Biotechnology, Atlas Venture, Sanofi Ventures and Digitalis Ventures followed on. Kanishka Pothula of Nextech and Brian Matesic of Norwest join the board; Andre Turenne is CEO. Nathanael Gray and Tinghu Zhang of Stanford, Jianwei Che of Dana-Farber and Edward Chouchani of Harvard Medical School and Dana-Farber founded the company. No valuation was given.

Why it matters: Matchpoint finds covalent binders with chemoproteomics and uses machine learning to choose targets and guide compound design. The money takes its first drug, an oral T-cell modulator for autoimmune disease, to clinical proof of concept, with trials to start in 2027. No clinical data exist yet, and the release does not say how much of MPT-062's design came from the models. Novartis already funds one of its programs under a July 2025 option deal worth up to $1B.

Matchpoint release ↗

Rivercell launches in Paris with a $25M seed to generate data on how cells respond to treatment over time, and train a virtual-cell model on it

What happened: HV Capital led; HCVC, Alven and Bpifrance Digital Venture joined. CEO Yann Fleureau, who co-founded the cardiac-AI company Cardiologs that Philips bought in 2021, started it in summer 2025; Eric Durand, formerly Chief Data Science Officer at Owkin and director of oncology data science at Novartis, joined this year as co-founder and CSO. Charlotte Bunne of EPFL and Fabian Theis of Helmholtz Munich join its scientific advisory board, and Maxi Pethö-Schramm spoke for HV.

Why it matters: Rivercell bets on the same gap as the Biohub initiative announced the same day: virtual-cell models lack data on how a cell changes over time after a drug or a genetic change, measured several ways at once. Its answer is a purpose-built data platform and an automated wet lab in Paris of its own, not public data. The money pays for that and a first model; no dataset, model or result has been shown yet.

Rivercell release ↗

Meta fits a scaling law to how well a robot world model imagines what happens next, and it holds for the two largest models, which were left out of the fit

What happened: Artem Zholus, Mahmoud Assran and colleagues at FAIR train predictors from 22M to 8B parameters on a frozen V-JEPA 2.1 encoder, from 23 public manipulation datasets across 12 robot platforms. Imagination error is the per-token distance between predicted and encoded features over a nine-step rollout. It follows a second-order power law in compute. Fitted on the 22M to 2B frontier, it matched the held-out 4B and 8B checkpoints more closely than three rival forms. Planning toward one goal image, grasp success rose from 30% at 22M to 67% at 8B.

Why it matters: The law was fitted without the two largest models and still describes them, which is more than a curve drawn through every point can claim. What it does not do is reach past 8B: the authors report an irreducible error the fit is already near, and say more compute alone will not move it without more and more varied interaction data. The robot runs are the authors' own, 30 episodes per model and task, scored by hand, on a platform whose data was in training. The promised code and checkpoints were not public two days on.

By Artem Zholus, Jeannette Bohg, Nicolas Ballas, Mahmoud Assran

arXiv 2610.10515 ↗

Ten extra structures per material sharpen a pretrained potential's phonons, but most ways of fine-tuning it then get phase transitions more wrong than not fine-tuning at all

What happened: Jonas Grandel, Philipp Benner and Janine George at BAM Berlin and Jena fine-tuned MACE-MP-0b3 separately for each of 53 materials, against their own new VASP reference calculations. Regularising towards the pretrained weights while training only the node embedding and first interaction layer cut the median phonon error to 0.05 THz against the foundation model's 0.27. On recovering the phase a soft mode leads to, across the nine materials DFT finds unstable, multi-head scored 0.43 and ordinary transfer learning 0.56, both below the untouched foundation model's 0.63.

Why it matters: The finding that matters is the gap between the two scores: getting harmonic frequencies right, and even classifying which structures are unstable, does not mean the model has the energy surface right along the unstable direction. The authors say as much in their introduction and conclusion. So a recipe picked on phonon error can quietly be worse at the thing phonons are usually computed to predict. Everything is model against DFT, in software; the best recipe's margin over doing nothing is 0.66 to 0.63.

By Jonas Grandel, Philipp Benner, Janine George

npj Computational Materials ↗

Danaher plans its first AI-run autonomous lab, at Abcam, to design, make and test antibodies and other reagents, at scale from early 2027

What happened: The lab uses AI to propose affinity reagents such as antibodies, builds and tests each one, and feeds every result back into the model. It strings together tools from Danaher's own companies (Beckman Coulter Life Sciences, Cytiva, Genedata, Integrated DNA Technologies, Molecular Devices), with robotics built with Automata. CEO Julie Sawyer Montgomery spoke for the company; chief science officer Jose-Carlos Gutierrez-Ramos says it is designed for up to 8x faster discovery and up to a tenfold rise in output, from tens to hundreds of reagents a year.

Why it matters: Danaher is building a closed design-make-test loop out of instruments its own companies already sell, as the first step of a stated push toward smart instruments and autonomous labs. It is a plan: the release says 'plans to launch', though a Simply Wall St piece, also run on Yahoo Finance, said 'launched', and the 8x and tenfold figures are design targets with no data behind them yet. What it would prove is whether such a loop speeds up reagent discovery inside a working business.

Danaher release ↗

Simon Batzner, a co-author of GNoME, leaves Google DeepMind for Anthropic

What happened: Simon Batzner, who built the NequIP interatomic potentials and was a co-author of GNoME and GenMS at Google DeepMind, announced on X that he has joined Anthropic as a Member of Technical Staff, thanking colleagues at DeepMind and Google Brain.

Why it matters: With him, four of GNoME's six authors now work elsewhere; three of them co-founded Periodic Labs. The team that produced DeepMind's best-known materials result has largely dispersed, while DeepMind builds a materials lab in London with different people. It follows John Jumper's move to Anthropic in June.

Evidence and limits: His post does not say what he will work on at Anthropic. His own website still described him as at DeepMind on 2026-10-22.

↳ Another DeepMind scientist who joined Anthropic John Jumper leaves Google DeepMind to join Anthropic
Simon Batzner on X ↗

OpenAI releases 722 maths manuscripts from the unreleased model behind its Navier–Stokes claim

What happened: OpenAI posts 722 manuscripts in 372 families from an internal model it gave about 4,000 open problems, at about three hours of ChatGPT Pro thinking per result on average. Sam Altman singles out four: a zeta zero-free region above real part 7/8 (the quasi-Riemann hypothesis), the Unique Games Conjecture and the free group factors problem, which he says have Lean proofs, and the Hodge conjecture for CM abelian varieties, without one. OpenAI says many but not all results are formalised, and unformalised ones could have issues.

Why it matters: Navier–Stokes was one disputed claim; this is hundreds from the same model at once, none confirmed outside OpenAI. A Lean proof checks each step, not that the formal statement is the open problem, and only some results have one. Mathematicians split: Alex Kontorovich (Rutgers) said the quasi-Riemann result would be "an instant Fields Medal" for a human; Álvaro Lozano-Robledo (UConn) said he was not sure what it is trying to achieve "other than, again, a massive PR stunt". The IAS advisory group, whose request to stop testing open problems on private models OpenAI declined, said its advice was no endorsement.

↳ Related commentary The OpenAI claims he disputes
↳ Related commentary The OpenAI results he discusses
↳ Related commentary The batch release he is answering
↳ Related commentary What the release did not disclose
↳ Related commentary The solved problems everyone sees
↳ Related commentary Raw dump, or a chosen explainer?
↳ Related commentary Against the release
The Next Web ↗

Resolution's agents formalize Hironaka's resolution of singularities in Lean: about 600,000 lines in a week, for an estimated $135,000 in tokens

What happened: Chris Elliott of Resolution, a lab that studies how AI models generalize, worked with agents on a 112-page step-by-step plan, then had an orchestrator agent, mostly Claude Fable 5.1, carry it out. The proof of Hironaka's 1964 theorem and its modern forms took about a week and some 30 interventions from him: about 100 billion input and 300 million output tokens and 600,000 lines of Lean. Billy Snikkers and Adam Newgas then spent two weeks refactoring it.

Why it matters: It gives formal mathematics a price tag a reader can cite, reached outside a frontier lab with little scaffolding beyond the plan and some agent skills from earlier efforts. Resolution needs the theorem for singular learning theory, which ties the shape of a model's loss landscape to how it generalizes, and says the library already lets it automate more of that theory.

Evidence and limits: The figures, including the token cost, which is an estimate, are Resolution's own. The proof is public with a checker, Comparator, that confirms it proves exactly the stated theorems, but the post reports no outside check. It formalizes known mathematics; the learning-theory results it is meant to enable are promised for the coming months.

By Billy Snikkers, Adam Newgas, Jesse Hoogland, Chris Elliott

↳ The Fermat's Last Theorem formalization that prompted it Claude completes a computer-checked formalization of Fermat’s Last Theorem
Resolution ↗

WhiteLab Genomics raises $26M to test its AI-designed gene therapy delivery vehicles in animals

What happened: AVP led the Series B, with Yaday Health and Blast Club new and Omnes Capital and Debiopharm following on; François Robinet of AVP and Daniel Teper of Yaday Health join the board. The Paris company, run by co-founder David Del Bourgo, designs AAV carriers with its ALFRED platform and is extending it to lipid nanoparticles and synthetic promoters. It says AI-designed AAVs crossed the blood-brain barrier in in vivo work with the Paris Brain Institute, with no liver signal detected.

Why it matters: The money pays for the in vivo experiments that show whether computed designs deliver genes in living animals, and for building designs it can own and license, not only selling services. The brain result is the company's own claim, with no paper or numbers in the release; more data is promised at the ESGCT congress.

WhiteLab Genomics release ↗

Multiply Labs raises a reported $75M for robots that automate manual steps in making cell and gene therapies and other biologics

What happened: Per The AI Insider, Patrick Soon-Shiong and NantWorks led the Series B, with AstraZeneca, Lingotto, Teradyne and Strange Ventures new and Founders Fund and Lux Capital among returning backers; total raised passes $100M. The company says the money expands manufacturing capacity, speeds up product development and grows its engineering, regulatory and commercial teams; Fred Parietti is co-founder and chief executive.

Why it matters: Parietti's case is that AI now designs more therapies than anyone can make, so the bottleneck moves to the factory; AstraZeneca, already testing the robots, now invests too. The 74% lower cost per dose and up to 100 times the throughput are the company's own figures, and the round rests on one outlet's report.

The AI Insider ↗

Vinci raises $250M at a $1.5B valuation for a physics model meant to replace simulation checkpoints in chip design

What happened: Advent, Temasek and Xora Innovation co-led the Series B; AMD Ventures and Madrona joined, and Eclipse and Khosla Ventures followed on. The $1.5B valuation is the company's own. Vinci says the money takes it from thermal, thermo-mechanical and convective-fluid work in semiconductors to memory, advanced computing, vehicles, aircraft and satellites, on a physics model it says needs no per-design training and reads designs of hundreds of millions to more than 15 billion degrees of freedom in minutes. Hardik Kabaria is co-founder and CEO.

Why it matters: This is the simulation bet that materials and chemistry have been making with learned potentials, moved to engineering: if a model can stand in for a finite-element run and stay accurate, physics stops being something you check at a few points and becomes something you ask while the design moves. AMD is now in through AMD Ventures. The published comparison with conventional solvers is Vinci's own, at EPTC 2025 and on its site; the customers it says benchmarked it are unnamed, and none of their results is public.

↳ AMD's other bet on physics and world models AMD agrees to buy Fei-Fei Li's World Labs for about $8.2B in stock
Vinci release ↗

A Peking University team and coding agents formalize the Poincaré conjecture in Lean: about 2.8 million lines, a little over two weeks for the main phase, about $25,000

What happened: Following Morgan and Tian's account of Perelman's proof, mathematicians wrote a blueprint and designed about 90 milestones; GPT-6-Astra put the milestone statements into Lean and, through coding agents working in parallel, built most of the proofs, with Fable-5.1 helping review statements. The result proves both the topological and smooth theorems, passes a full Lean build and a check against target statements written only with Mathlib, and is rechecked by an independent kernel. Bin Dong and Chunlei Liu are corresponding authors.

Why it matters: After Fermat's Last Theorem, another famous proof is machine-checked, and the paper says where the work went: preparation began in May, and people chose definitions, reviewed the milestone statements and unblocked the agents. The kernel settles that each proof step is valid; whether the statements say what Perelman proved still rests on human review. An independent formalization by Ziyang Qin, Bennett Chow and others was announced at the same time.

By Zhiyuan Zhang, Axel Delaval, Chunlei Liu, Bin Dong

↳ The Fermat's Last Theorem formalization the paper compares itself with Claude completes a computer-checked formalization of Fermat’s Last Theorem
arXiv 2610.08329 ↗

A model that reads the retina's vessel network predicts preeclampsia months early, and held up at a second hospital with 13 cases

What happened: Srilaxmi Bearelly, Cassandra Areff and Liat Shenhav, at Columbia and NYU, turned retinal photographs into measurements of the vessel network's shape and branching, not image embeddings. Trained at Columbia on 1,267 women, 55 of whom developed preeclampsia and 54 of whose images were usable, it reached AUC 0.91 and average precision 0.81. With no fitting on NYU outcomes it scored 0.81 and 0.68 on the 66 analysable NYU Langone women, 13 of them cases, against 0.73 and 0.50 for the Fetal Medicine Foundation's calculator. RETFound was near chance there.

Why it matters: Preeclampsia is diagnosed late, and trials find aspirin started before 16 weeks cuts preterm delivery with preeclampsia by up to 62%, so an early signal is worth something. What this tests is transfer: different cameras, workflows and populations, with NYU's features rescaled to Columbia's but no refitting. It is a second site, not a second party: NYU's lead is the model's senior author, so this record counts it internal. The authors' caveats: 54 and 13 cases, NYU's 17.7% preeclampsia rate against the hospital's usual 8%, calibration and thresholds still open.

By Srilaxmi Bearelly, Cassandra Areff, Liat Shenhav

Nature Biotechnology ↗

XtalPi debuts a closed-loop siRNA design platform and says six of its own programmes now run on it, the first reaching monkey data in 7 months

What happened: Kodexia pairs a model XtalPi calls siFormer (built on RNA thermodynamics and strand-loading structure, not sequence correlation alone) with automated labs it says run over 500 in vitro and 30 in vivo experiments a week. XtalPi reports a nearly threefold gain in design efficiency over conventional workflows, and says more than half of first-round designs across several programmes beat the positive control in vivo. Its lead programme, in IgA nephropathy, reached monkey efficacy data in seven months, exceeding a clinical-stage molecule against the same target.

Why it matters: The claim being tested is that a design loop can carry a new modality end to end: XtalPi's evidence has been in small molecules and antibodies, and siRNA's hard parts (extrahepatic delivery, cell-to-animal translation, patent space) are the ones it says Kodexia designs against. Monkey efficacy in seven months is the figure to hold it to. But every number is measured in-house with nothing shown (no figure, no dataset, no paper), and the clinical-stage molecule it says it beat is unnamed, so none of it can be checked from outside.

XtalPi release ↗

insitro puts models trained on Lilly's decades of preclinical data into Lilly TuneLab, for member biotechs to predict how a molecule behaves in the body before making it

What happened: The model reads only a molecule's structure and predicts clearance, volume of distribution and mean residence time after intravenous dosing in mouse, rat, dog and monkey. On a held-out test set split by chemical cluster, predicted and measured values correlated at roughly 0.6 to 0.8 and 69-91% of predictions fell within three-fold. For mouse and rat clearance it reached a correlation of 0.54-0.62, against about 0.5 for the standard extrapolation from lab assays. TuneLab runs by federated learning, so members' structures are not shared.

Why it matters: Animal pharmacokinetics is one of the measurements that decides which molecules go forward, and drugmakers' decades of it are rarely seen outside the company. Here one drugmaker's data reaches smaller companies as a model they can query rather than as data, which is how TuneLab is meant to share what large companies hold.

Evidence and limits: All figures are insitro's own internal test, and the post warns they may not hold for new chemistry. The baselines' correlations were computed on the whole dataset, not the same test split. The data's size is given only as hundreds of thousands of molecules overall and a few thousand in vivo studies.

insitro technical post ↗

Gemini 4 agents propose, and the authors re-derive, exact 3D plasma equilibria that break stellarator symmetry, widening the counterexamples to Grad's conjecture

What happened: Opal Issan, Jonathan Citrin and Brendan Tracey of Google DeepMind, with Matt Landreman of the University of Maryland, extend two families of exact 3D magnetohydrodynamic equilibria that Landreman found weeks earlier as counterexamples to Grad's 1967 conjecture. A new parameter breaks stellarator symmetry and gives back the earlier solutions when set to zero. The paper says Gemini 4 agents in Antigravity proposed the generalised solutions within hours; the authors chose the problem, steered the agents and re-derived every result.

Why it matters: It is a model contributing a new closed-form result in mathematical physics, with its role written into the paper and every step re-derived by people. It stays on paper: the solutions are offered as benchmarks for stellarator codes such as VMEC and DESC, and none has been run on them yet. The first counterexamples were Landreman's own; this paper widens them.

By Opal Issan, Jonathan Citrin, Matt Landreman, Brendan Tracey

arXiv 2610.07304 ↗

Arc Institute releases PIE, an open model that predicts how cells respond to a perturbation by reading what is already known about the gene, drug and cell line

What happened: PIE turns curated sources such as Gene Ontology, DepMap, PubChem and Cellosaurus into inputs and predicts which genes change, in which direction and by how much, in one pass with no fine-tuning. On the Replogle-Nadig Perturb-seq data across four human cell lines, it reached 1.2 to 3.2 times the AUPRC of the strongest competing method in each setting, with the largest gain on perturbations it had never seen. Code, weights and data are public.

Why it matters: A virtual cell is only useful if it predicts experiments nobody has run yet, and PIE tries to get there by borrowing what biologists already wrote down. Arc says accuracy drops when both the cell line and the perturbation are new, and every score is on existing public data, computed by Arc itself.

By Rishi Verma, Hani Goodarzi

Arc Institute ↗

Italfarmaco signs an AI drug-discovery deal with VeriSIM Life on an HDAC target, potentially worth over $100M in fees, milestones and royalties

What happened: The two will design and optimise small molecules against an HDAC target for neuromuscular, fibrotic and rare diseases. VeriSIM brings AtlasGEN, which proposes synthesisable molecules, and BIOiSIM, which scores them for pharmacology, exposure and safety; Italfarmaco brings HDAC biology, chemistry and clinical development. Christian Steinkühler, Italfarmaco's chief scientific officer, and Jo Varshney, VeriSIM's founder and chief executive, spoke for the companies. No upfront payment was disclosed.

Why it matters: A private drugmaker that already has an HDAC drug on the market is paying an AI company to find the next one, which shows where such companies earn money: service fees now, milestones later. Over $100M is the most it could be worth, not money paid.

Business Wire via BioSpace ↗

Google DeepMind and Caltech's AlphaProtein Novo designs an enzyme that makes piperidine at 99:1, where none of 188 natural and engineered variants beat 30:70

What happened: Zachary Wu, Josh Abramson and colleagues run a diffusion model that writes an enzyme's backbone and sequence around a catalytic motif, then filter candidates on AlphaFold 3 predictions. Frances Arnold, who won the 2018 Nobel for directed evolution, is on the byline and her Caltech lab did part of the wet work. Of 188 natural and engineered heme proteins screened, nine were active and none passed a 30:70 piperidine-to-pyrrolidine ratio; design GDM_NT_270 reached 99:1 at 94% enantiomeric excess over 22 turnovers.

Why it matters: Designs were expressed, purified and measured, and knocking out active-site residues abolished activity in 14 of 19 serine esterase mutants, so the catalysis is the designed one. They win on selectivity and durability, not speed: a designed DEHP esterase is 14-fold more active at 90 °C than at room temperature, where two natural ones are dead, but at room temperature it reaches only 6% of a natural enzyme, and the paper says de novo rates stay orders of magnitude below natural or evolved enzymes. The 360,000 M-1s-1 esterase has a natural serine-esterase fold; the best with none is 4,900.

By Zachary Wu, Pushmeet Kohli, Jue Wang

↳ The same lab's binder design, two years on AlphaProteo designs experimentally successful protein binders
↳ The filters read AlphaFold 3 predictions AlphaFold 3 predicts interactions across biomolecules
↳ Design and prediction, recognised in 2024 The Chemistry Nobel recognizes protein design and AlphaFold
bioRxiv ↗Read More · AI4S Brief →

Iambic files to start a Phase 1/2 trial of IAM217, a KIF18A inhibitor it says it designed with AI and without a drug-bound crystal structure

What happened: The IND asks the FDA to let Iambic test IAM217 in triple-negative breast cancer, ovarian cancer and other tumours with unstable chromosomes. Iambic says its NeuralPLexer model supplied the structure where no inhibitor-bound crystal structure existed, and Enchant and earlier Iambic models took hits from 24 screening plates from about 100 nM to about 10 nM potency while tuning oral uptake, drug interactions and brain entry. In a preclinical brain-metastasis model, it reports established tumours shrank by about 90%.

Why it matters: If the FDA clears it, IAM217 becomes Iambic's second drug in human trials after IAM1363, and the IPO prospectus already names it as a use of the money. It is also a concrete case of a claim AI drug companies often make: that a predicted structure can stand in for a crystal structure when designing a drug.

Evidence and limits: An IND is a request, not a clearance. The potency, brain-entry and tumour figures are Iambic's own, given in a press release without the data, and no person has yet received the drug.

Iambic release ↗

A Vals researcher and Claude agents compute two magnet candidates that sort electrons by spin with no net magnetism, one of them first made in 1999

What happened: Geby Jaff of Vals AI and a team of Claude Opus 5.5 agents used density functional theory to look for Luttinger-compensated magnets: zero net magnetism, yet electrons sorted by spin, as spintronic memory needs. They designed a new oxide, YBaMnFeO5, predicted to be a semiconductor with wide spin-sorted windows, and pointed out that KV[Cr(CN)6], made in 1999 and measured as magnetically ordered up to 376 K, is this kind of magnet, which earlier papers had not said. Inputs, outputs and code are public.

Why it matters: A 2025 study named a room-temperature magnet of this kind as the open goal. The second candidate already exists as a sample, so the next test is short: make it again and measure whether its electrons really sort by spin.

Evidence and limits: Everything is calculated. The designed oxide needs its manganese and iron in a checkerboard that the agents' own simulation shows scrambling near 950 K, while such oxides are made at 900 to 1300 C, so it may be hard to make in useful form. The only 1999 sample is a powder with water in its pores; the two methods disagree on whether that cuts its spin window by more than half, and nothing has been measured.

By Geby Jaff

Vals AI ↗

The US and 16 other countries endorse the Kyoto Vision, a non-binding statement that they will try to put AI to work in science

What happened: Science ministers meeting in Kyoto alongside the STS Forum on 4 October endorsed a one-page declaration led by Michael Kratsios, director of the White House Office of Science and Technology Policy. They "endeavor" to widen researchers' access to what the text calls "super intelligence" tools, scientific data, computing and experimental facilities, and encourage AI that drives "autonomous, closed-loop discovery", alongside metascience and new ways to fund research. Signers include Japan, Germany, the UK, Italy, Korea, Singapore and the UAE.

Why it matters: Seventeen governments now name AI-run, closed-loop discovery as something they mean to support, the direction the US already pays for through the Genesis Mission. But the text commits no money, sets no targets and binds no one: it says "endeavor" where the White House release says "pledged". China and France are not on the list.

The declaration's text ↗

Xaira says X-Design Vega took its XA-1 nanobody from DNA synthesis to a lead in 7 weeks, and made an antagonist for a GPCR that library screening and llama immunisation failed on

What happened: On its own site, Xaira describes two internal programmes run with X-Design Vega. XA-1: 182 designed nanobodies, 18 confirmed binders, the best at 17 nM KD to the human target and passing every developability test; 7 weeks from DNA synthesis to a lead. XA-4, a GPCR where nanobody library screening and llama immunisation had both failed: about 60,000 designed, 92 tested, 7 bound and 6 of those inhibited, best IC50 183 nM.

Why it matters: It tests two questions for de novo design: can it shorten hit-to-lead (XA-1 reached a selective, developable lead), and can it open targets where other methods failed (XA-4 gave a working antagonist, not just a binder). Limits: targets undisclosed, so outsiders cannot judge how hard they are; in-house assays, no independent replication; no paper, so method and benchmark go unreviewed; XA-1's epitope was chosen in advance, so it shows design and optimisation, not finding a binding site.

Xaira Therapeutics blog ↗

XtalPi moves its own AI- and robot-designed hair-loss drug into IND-enabling studies after a mouse result it compares with minoxidil

What happened: The company says pharmacology, safety and manufacturing studies are under way toward an IND. In a mouse model of androgenetic alopecia, a candidate reached a hair-growth score comparable to 5% topical minoxidil at one-hundredth of its concentration. It was optimised by a loop of AI-guided design, free-energy calculations and robotic synthesis and testing; XtalPi already sells two AI-developed scalp-care cosmetic ingredients.

Why it matters: An AI-and-robotics company taking a molecule of its own toward the clinic, not only running projects for partners, is the step investors in such platforms wait for. The evidence is one mouse model in a press release, with no data, paper or named scientist, and IND-enabling is the stage before any human dose.

XtalPi via PR Newswire ↗

Ai2 opens the weights and training data of AstaBrief 8B, the model that writes cited literature reports in its Asta tool

What happened: AstaBrief is Qwen3-8B post-trained on 47,000 reports generated for real researcher queries, plus 6,000 preference pairs, and it writes a report in one pass instead of section by section. In Asta it runs as Fast mode at 51.1 seconds a report against 178.5 for the Claude-backed Thinking mode, about 3.5 times faster. Ai2 says the clearest gain came from one simple filter: dropping training reports that left claims uncited.

Why it matters: An institution that cannot send unpublished questions to a hosted model can now run the report writer itself, which is the point of releasing the weights. Ai2 is plain that most of the evaluation was done in 2025 against the frontier models of that time and has not been rerun, and that in its 14-question human study of three researchers, the open DR Tulu was preferred overall. Two of three preferred AstaBrief only on citation accuracy.

Ai2 on Hugging Face ↗

ImmuneAgent ranks antibody candidates out of human B-cell sequencing: 60 of 110 cloned neutralised a virus, 12 of them broadly

What happened: The system reads single-cell B-cell receptor data from people who were vaccinated or infected, ranks candidates on cell type, sequence, predicted structure and a trained predictor together, and feeds each round of lab results back into the model. Of 110 cloned antibodies (60 from an antigen-sorted SARS-CoV-2 dataset, 50 from an unsorted influenza one), 60 neutralised and 12 were broadly neutralising. Five protected all six mice each against a lethal flu dose, as the clinical-stage antibody MEDI8852 did.

Why it matters: Antibody discovery usually starts by sorting cells against a known antigen. Only the influenza arm skipped that step, and it is the one the mouse protection came from, which is what would matter for a virus nobody has sorted cells for yet; the larger SARS-CoV-2 half was sorted as usual. What was tested is prophylaxis in mice, six per group, and the authors say the design cannot establish equivalence to MEDI8852. One group's preprint, baselines retrained by the same team, and their own audit found 19% of the SARS-CoV-2 test sequences within 90% identity of training data.

By Hantao Lou, Xiangxi Wang, Xuetao Cao

+1arXiv 2610.03160 ↗

Meta posts six maths papers done with Muse Spark in its ordinary chat app; it says five answer open questions, and for three of them other teams posted answers first

What happened: Mathematicians used Muse Spark 1.1 and 1.2 in Thinking Mode on meta.ai, with no research scaffold. The model wrote the GAP search that found a 384-element counterexample to a 2024 conjecture that semiabelian groups are monomial, produced a three-dimensional counterexample in evolution algebras, and drafted three core technical sections of a number-theory paper. Each paper marks in its margin which passages people drafted and which the AI did.

Why it matters: This shows a public chatbot doing real work on problems mathematicians picked themselves: people chose every question and checked every proof. The papers sit on Meta's own site, reviewed by mathematicians inside the collaboration rather than by a journal, and Meta does not say any proof was machine-checked. On three of the five, others had already posted solutions by other routes, among them the AI agent Nilradical, whose counterexample came with a Lean proof.

By Aykut Arslan, Leonard Dinh, Joseph Phillip Brennan, Andres Barei

Meta AI blog ↗

Baker lab designs two working enzymes with complex active sites, one with a 2.7 Å crystal structure

What happened: CaGE, from David Baker's lab, fades a structure predictor's geometric constraints out over repeated design cycles, so the final sequence has to hold the active site on its own. Two designs worked in the lab: an iron enzyme giving 83% enantiomeric excess, and a PLP retro-aldolase whose 2.7 Å crystal structure matches the design model to 0.702 Å on the backbone.

Why it matters: An active site that couples several residues to a cofactor and a substrate has been the hard part of designing enzymes from scratch. On the PLP side none of the 30,293 usual-pipeline sequences passed the filter; after CaGE cycling 96 did, and one of those turned out active.

Evidence and limits: No rate constants: the paper gives endpoint yields over 16 hours, not catalytic efficiency, so there is nothing to compare against a natural enzyme. The crystal structure is of the empty protein, so it shows the fold, not the active site. Six of 71 iron designs gave a signal above control. No outside lab tested it. A preprint.

By Tingli Qian, David Baker

bioRxiv ↗

MIT's VISTA harness lets Claude Opus 5.0 finish all 25 public ARC-AGI-3 games from screen images, with no new model trained

What happened: Kaiming He's group at MIT wraps existing multimodal models in a harness that keeps every game frame and lets the model zoom into or replay any of them. Claude Opus 5.0 scored 100 and GPT-5.6 Sol 99.00, against 40.68 and 13.33 under the organizers' official setup, which runs through the API with tighter limits and, for Opus, one step lower reasoning effort. Opus used 57.4% fewer actions than first-time human players.

Why it matters: The authors' own step-by-step test shows where the gain comes from. Images instead of text grids and looser action and time limits took GPT-5.6 Sol from 13.33 to 51.66; keeping every frame to zoom into and replay, plus exact pixel reads, took it from 70.05 to 99.00. For agents watching experiments, that argues for keeping raw observations rather than summaries. Only the 25 public games were tested, and the models may have seen them in training.

By Qiushi Han, Keya Hu, Linlu Qiu, Kaiming He

arXiv preprint ↗Read More · AI4S Brief →

arXiv caps each submitter at two papers a month after a record 40,363 submissions in September, a rise it puts down to AI tools

What happened: From 1 October each submitter may send two papers a calendar month, in every category; rejections count, co-authors don't, and the 2024 cap of three active submissions stays. September set a record: 40,363 submissions, 51% over a year earlier, and almost 9,000 support tickets.

Why it matters: arXiv blames AI tools: thin papers, one study split into several, dense AI-written ones; cs.AI is up over sixfold in two years. The cap is a stopgap to share volunteer moderators' time, not a quality test.

arXiv blog ↗Read More · AI4S Brief →

Imperial's GEODE makes 11.9% metastable, unique and novel crystals on MP-20, against 7.7% for the next symmetry-aware model

What happened: Yuchen Lou and Alex Ganose's model samples a symmetry template, then diffuses lattice, coordinates and elements in Cartesian space. Filtering templates lifts the rate to 18.2% without retraining, and a permittivity-guided demo is shown.

Why it matters: Symmetry-aware generation now beats earlier symmetry-aware models. All of it is computed: metastable is an energy check, not a made material, and rates differ between papers' set-ups.

By Yuchen Lou, Alex M. Ganose

arXiv 2610.01898 ↗

AI Theorist builds a model of a quantum material's optical spectra from measurements nobody had published, and the experiment that would settle it has not been run

What happened: Human scientists measured reflection and photocurrent spectra on a thin a-RuCl3 crystal at 8 K. Agents (Claude Opus 4.6 for hypotheses, critique and synthesis, a fine-tuned Qwen3.5-27B for choosing calculations) then ran Quantum ESPRESSO and BerkeleyGW themselves, rejected two explanations and assigned the three measured peaks to bound electron-hole pairs at 1.077, 1.179 and 1.291 eV. The run took 154 million tokens; the Claude share of that came to about $335 at list prices, with 69 hours of simulation unpriced.

Why it matters: This is a model fitted to measurements that already existed, not a prediction anyone has checked: the test that would separate it from the alternatives (rotating the light's polarisation from zigzag to armchair) is written down as a prediction. The authors call the peak assignments candidates, say one calculated spacing is still too small and that the screening updates are not strictly converged. An unnamed human theorist went over the methods. One group's preprint; code and data are promised, not posted.

By Hongjian Zhou, Xianfan Nie

+1arXiv 2610.02417 ↗

MeteoSwiss's 1-km AI weather model Varda-single roughly matches its own 1-km physics model for 33 hours over the Alps, but underestimates some local wind peaks

What happened: Varda-single is a graph-transformer forecaster built in ECMWF's Anemoi framework, trained on ERA5, then a 20-year 1-km Swiss reanalysis, then operational analyses. Checked from April 2025 to March 2026 against analyses and weather stations, it broadly matches the 1-km ICON-CH1-EPS control up to +33 h and generally beats the 2-km ICON-CH2-EPS control up to +120 h. It runs quasi-operationally every 3 hours and its weights are on Hugging Face. Alberto Pennino and Francesco Zanetta lead it; Oliver Fuhrer is last author.

Why it matters: Global AI models already rival physics forecasts; the open question was whether that holds at the kilometre scale, where mountains steer wind and rain. A national weather service now says yes on most headline scores, on its own verification. It is deterministic only, smooths convective rain, and underestimates some local wind maxima, which are much of what a mountain forecast is for.

By Alberto Pennino, Francesco Zanetta, Oliver Fuhrer

↳ The global AI forecast that first beat a leading physics model GraphCast beats a leading physics-based weather system
arXiv 2610.01835 ↗

Shift Bioscience says the metrics behind 'perturbation models do not beat baselines' are miscalibrated, and that newer models win once better-calibrated metrics are used

What happened: Across 14 genetic perturbation datasets and 18 metrics, the paper adds a positive control built from duplicated data and a measure of how much of a metric's range a model can use. Mean squared error and control-referenced correlation often fail that test. On one Perturb-seq dataset at least one deep-learning model beats every baseline on every metric. On the Norman19 combinatorial dataset an additive baseline still captures about 88% of the gap to ideal performance on the best-calibrated metrics.

Why it matters: If the measure is wrong, the field's reading of a negative result is wrong too, and this argues the earlier benchmarks hid the signal rather than finding none. It is a re-analysis of public data with no new experiment, and every author has a commercial interest: five work for a company selling perturbation modelling and the sixth is a chief AI scientist at Xaira.

By Henry E. Miller, Lucas Paulo de Lima Camillo

Nature Biotechnology, full text read ↗

Google announces Gemini 4 Argon, rolling out first to trusted cyber defenders, and says it beat a published quantum-subroutine baseline by 40%

What happened: Limited rollout to trusted cyber defenders through the Fairwind Program. Google reports 77.9% on DeepSWE v1.1 and 68% on CWE-bench v1 (tied first); introductory price $2 and $10 per million input and output tokens.

Why it matters: Google's science example: Argon optimised a quantum subroutine's qubits × gates and, in one case, beat a published baseline by 40% in minutes. No circuit, baseline or check is given, so it is a claim.

Google ↗

DeepMind publishes SynthID Bio in Nature: invisible watermarks for AI-designed proteins that still bind their targets

What happened: Watermarks protein sequences and AlphaFold 3 structures without hurting function. In wet-lab tests on VEGF-A, SARS-CoV-2 RBD and PD-L1, watermarked binders matched unwatermarked ones in hit rate and affinity.

Why it matters: Gives DNA synthesis screeners a way to tell AI-designed sequences apart. It is a proof of concept, and DeepMind lists robustness to deliberate tampering as unsolved.

By Pushmeet Kohli, David Stutz, Ali Cowen-Rivers, Jeremy Ratcliff

Google DeepMind; Nature ↗

Zenithon raises a $10M seed to build world models for fusion, rocket and chip-making physics

What happened: Founders Alex Higginbottom and Abetharan Antony raised it from Backed, Lunar Ventures, Seraphim Space, MMC Ventures and SOSV, plus angels; no lead is named. The company confirmed the round.

Why it matters: A bet that learned models can replace simulations that take days to months. The claim of a million designs in the time of one simulation is the company's own; neither article shows a result.

↳ Funding record Zenithon · Seed · $10M →
Tech.eu; TFN ↗

HHS and ARPA-H launch SURPASS, a five-year programme to run clinical trials with digital twins and AI agents

What happened: SURPASS pairs digital-twin trial simulation, real-time analysis that shrinks control groups, and AI agents for site start-up. Three smaller projects cover sites, consent and patient data. No funding figure; proposals open this fall.

Why it matters: A US agency bets simulated trials and agents can cut drug development time and cost. It is a plan; nothing yet shows regulators will accept it.

ARPA-H press release; BioSpace ↗

OpenAI and Synopsys agree to build GPT-Synopsys, a model that runs Synopsys chip-design tools, with shared revenue

What happened: A multi-year deal: OpenAI licenses Synopsys' design-automation tools to train a model for power-performance-area tuning, timing closure and verification. Early work with unnamed chip customers is under way; no terms or launch date.

Why it matters: A frontier model learns to run specialist simulation software, a pattern that could carry to materials and devices. It is a plan: no results, no customers named.

OpenAI and Synopsys press release ↗

CompMat-Bench: three LLMs pass 66.0-90.4% of 94 computational-materials research steps, with the costly simulations run in advance

What happened: Boris Yakobson's Rice group built tasks from 15 recent papers. Agents prepare inputs or analyse outputs of simulations run once in advance, graded by fixed rules, no LLM judge. Long workflows and less guidance hurt.

Why it matters: Single steps are mostly solved; length and thin guidance separate agents. In long workflows 38 of 50 failures were wrong science, like ignoring a warning in their own output. One group's preprint.

By Chenmu Zhang, Boris Yakobson

arXiv 2610.00636 ↗

Profluent and BioMarin agree to design enzyme replacement therapies with Profluent's protein models, on terms neither names

What happened: Profluent's protein language models, which draw on an atlas it puts at more than 115 billion protein sequences, generate enzyme candidates; BioMarin screens them and may take some into preclinical testing, for genetically defined conditions. Ali Madani, Profluent's chief executive, and Pooja Agarwal, BioMarin's head of metabolic conditions research, are the two quoted. Neither side gives financial terms.

Why it matters: A rare-disease company takes its enzyme designs from a model company instead of building the models itself. It is a research agreement: no molecule, no data, and no money disclosed.

HLTH and Pharmaceutical Technology ↗

Autopoiesis Sciences raises an $11M seed led by Threshold to build AI for scientific reasoning and autonomous discovery

What happened: Threshold Ventures led; Informed Ventures, Alpaca VC, VitalStage Ventures, Correlation Ventures, DarkMode Ventures and angels joined. The San Francisco company makes Aristotle, a research assistant for forming hypotheses and weighing evidence, and Columbus-1, an autonomous system for long research problems. CEO Joseph Reth previously led the AI lab Lossless Research; co-founders are Eike Gerhardt, a former venture investor, and chief scientist Lawrence Callahan, a chemist who worked at the FDA and NIH. No valuation was given.

Why it matters: Its bet is that science lacks the checkable reward that trained models in maths and code, so it builds that signal from expert scientists' judgment on real problems. The round pays for people and research. What the company has shown so far is its own: a benchmark score it reported in 2025, a list of institutions it says use Aristotle, and Columbus-1 results in its own paper; none has been tested by anyone else.

Autopoiesis Sciences ↗

A flu forecast Google says it built with its ERA coding system ranked first of 39 models in CDC's scoring of the 2025-26 season

What happened: CDC's end-of-season FluSight report, published 30 September, scores weekly forecasts of state flu hospital admissions made from November 2025 to May 2026. Google_SAI-FluEns had the best relative weighted interval score, 0.56, where a model that repeats last week's count is 1.0; the next three scored 0.58, and CDC's own ensemble 0.62, seventh. Google says the model was built with Empirical Research Assistance (ERA), its language-model and tree-search system for writing scientific software, published in Nature in May.

Why it matters: These forecasts were made week by week before the admissions were known and scored by CDC, not Google. The Nature paper's comparable claim, beating CDC's COVID-19 ensemble, was a retrospective study on past data. The lead is narrow, though: 0.56 against 0.58 for three other models, over one moderate season, and 33 of the 39 models beat the baseline. One season does not show the ERA-built model stays ahead.

CDC FluSight evaluation ↗

OpenAI's DevDay upgrades its work tools: always-on agents called dots, Codex in the cloud, shared ChatGPT Space pages, and GPT-6.1 Sol

What happened: Dots run on GPT-6 Astra with their own cloud computer and reach over 4,000 apps. Codex runs in the cloud with shared environments; Space pages are edited by teams and agents together.

Why it matters: These are upgrades to daily work tools: agents that keep working unattended, shared coding setups, documents that update themselves. Dots run on the model AISI flagged a day earlier.

OpenAI DevDay recap ↗

Kyunghyun Cho launches Ortet, a frontier AI lab for health, with a $500M commitment from Thoreau

What happened: Cho, with co-founders Keunwoo Choi, Henri Dwyer, Jeff Hammerbacher and Elman Mansimov, will build a patient-centred health foundation model. Thoreau commits $500M; the structure is not disclosed.

Why it matters: A health AI lab started with its backer's operating businesses as customers. A commitment is not a raised round, and the release shows no model or result.

Business Wire ↗

OpenAI is reported to be targeting at least $30B at about a $1.4T valuation, in early talks

What happened: Bloomberg, via Quartz, reports early talks that could change, driven by investors. Sam Altman has said OpenAI is stepping back from a listing this year. Last round: $122B in March at $852B post-money.

Why it matters: Capital for the lab behind Prism and FrontierScience. Only talks, from unnamed sources; OpenAI has not confirmed. Earlier, the WSJ reported CFO Sarah Friar doubted its readiness for public-market requirements.

TechCrunch and Quartz ↗

CARAT tests whether a materials LLM reasons over a crystal structure or copies the answer printed in its input

What happened: Same question and answer, eight input views. On the hardest families the structured view beat formula-only input by 17.3 points, but most of its 19.3-point gain over a plain graph reflects fields the baseline lacked.

Why it matters: The authors take apart their own headline: a gain from structured input can just mean the baseline lacked fields. One 27B model, fine-tuned per view, on their own benchmark.

By Jiajun Wu

+1arXiv ↗

A UC Santa Cruz benchmark finds an AI scientist can predict well while missing the law, and find the law while predicting badly

What happened: Twisted-law worlds, such as gravity with exponent 2.3. In 20 graded trials by one Claude Code agent, 8 passed held-out prediction and 5 recovered the law. Drag: 5 of 5 predicted, 1 found the law. Gravity: 1 predicted, 4 found it.

Why it matters: Passing a held-out test does not show the agent found the law. One author, one agent, 22 of 60 planned runs, and almost no familiar-law controls, so it shows the gap, not whether familiar priors cause it.

By Kargi Chauhan

arXiv 2609.36726 ↗

OpenAI's GPT-6.1 Sol costs $5.47 per Terminal-Bench Science task, against $23.21 to $23.80 for Opus 5.5 and GPT-6 Astra

What happened: Sol is priced at $2 input, $10 output and $0.10 cached input per million tokens, a fifth of Astra's. Reported Terminal-Bench Science accuracy is 57.0% against Astra's 68.1%. It runs in ChatGPT Work, Codex and the API.

Why it matters: Long science-agent runs cost far less, but Sol solves fewer tasks, so the saving holds only if a failure is cheap. A model release, not a scientific result.

The Next Web ↗

GLASS generates metal-organic frameworks of up to 150 atoms at 74.8% structural validity, but 98.3% of its valid samples match known training frameworks

What happened: Researchers at Stuttgart and Toronto encode a crystal as one global latent and decode all atoms in parallel from learned slots. On QMOF, validity is 74.8% against 80.3% for training data and 52.9% for Mofasa. Code is released.

Why it matters: Generating larger all-atom structures works at the structural level. But 98.3% of valid samples match training structures, and validity is a software check, not stability or synthesis.

By Hendrik Kraß, Seyed Mohamad Moosavi, Mathias Niepert

arXiv 2609.37158 ↗

Microsoft Research releases Quine, a multimodal world model of biology, open to a fellows programme and selected collaborations

What happened: Quine learns across genomics, proteins, chemistry, RNA and cell state, and bioimaging, with a harness tying models, tools, literature and researchers together. With Broad Institute scientists on pancreatic cancer cell lines, Microsoft says its top-ranked compounds produced the largest shifts from the classical to the basal tumour state, narrowed over one weekend; the reverse direction was weaker. There is no paper, and access is the Quine Fellows programme and selected collaborations.

Why it matters: Microsoft puts one model across five kinds of biological data and says a wet lab checked its ranking. The post is the only source: no paper, no numbers, no data. It also reports the cells moving toward a third state, which it says Quine had predicted, a claim nobody outside can check.

Microsoft Research blog ↗

RxnOptBench asks models to pick reaction conditions from real screening tables; chemistry-specialised models score at chance on the multi-axis choice

What happened: Authors at Shanghai AI Laboratory, Shanghai Jiao Tong University and the Shanghai Innovation Institute turned 552 condition-screening tables from 232 organic-methodology papers of 2025 into 4,773 questions: every catalyst, ligand, solvent and temperature on offer is an entry a chemist actually ran, scored against the paper's own yield and selectivity. Nine frontier models and three chemistry models were tested, with and without the literature precedents in context. The best leave substantial headroom, and the chemistry-specialised models fall to the random-baseline floor when several condition axes must be chosen together.

Why it matters: Existing chemistry benchmarks ask models to label a reaction or write a SMILES string; this one asks the judgment call a methodology chemist makes, and pairs each task with and without precedents to separate reading the literature from recall. Open-weight models have closed most of the proprietary lead on single-axis choices but not on the whole set, and the test set is promised under a research-use agreement rather than linked. Every score is computed against numbers already in a paper, so it measures choosing conditions on paper, not getting a yield in a flask.

By Lingli Ge, Jiang Wu, Yuqiang Li, Conghui He

arXiv 2610.02242 ↗

Sandia National Laboratories will use Radical AI's self-driving lab to search for cheaper metal membranes that separate out hydrogen

What happened: The work studies how metals take up and pass hydrogen, aiming at membranes that let hydrogen through and hold back the other gases in a waste stream. Palladium is the standard membrane and is expensive; testing an alternative has meant hand-making alloy ribbons and running each through days to weeks of heat and pressure tests. Vitalie Stavila, a Sandia staff scientist, says driving robotic synthesis and feeding the results back into Sandia's research is a big part of why it partnered. No money, length or alloy list is given.

Why it matters: A national lab is running a materials search on a startup's automated lab, on a problem where membranes that pass hydrogen fast have tended to turn brittle. It follows Radical AI's memorandum with the Department of Energy and Purdue's torch test of its alloy.

Evidence and limits: This is Radical AI's own post; no Sandia release was found. It reports no results yet and says both sides will share them as the work goes.

Radical AI ↗

Tremont AI comes out of stealth as a Mahmood Lab spin-out, licensing Mass General Brigham technology to read tissue from animal drug-safety studies

What happened: The Boston company's release names three things: TRACE, a vision model for tissue images; ToxScribe, which writes what the model sees as words; and Tremont Studio, where a pathologist reviews a whole study. Luca Weishaupt, who did his PhD in Faisal Mahmood's lab, is chief executive; the scientific co-founders are Mahmood, who directs Mass General Brigham's AI Institute, Long Phi Le of Massachusetts General Hospital, Guillaume Jaume and Jakob N. Kather. The technology is exclusively licensed from Mass General Brigham, and no funding, investor or customer is named.

Why it matters: Before a drug reaches a person, pathologists read the tissue of the animals it was tested in, slide by slide, and a programme waits on that reading. Models of this kind went to cancer diagnosis first; this is the same lab's technology moved to the safety studies that gate the pipeline, and the second company its founders have spun out, after Modella AI, which AstraZeneca bought this year.

Evidence and limits: A launch measures nothing: the release gives no score, no number of studies and no result from a partner. What the licensed model has published is a 2024 bioRxiv preprint by Guillaume Jaume and colleagues, TRACE trained on 15 million images from 46,734 rat tissue sections across 157 preclinical studies, which reports higher agreement with the consensus than the average of ten board-certified veterinary pathologists in its authors' own reader study.

Tremont AI ↗

AMD agrees to buy Fei-Fei Li's World Labs for about $8.2B in stock

What happened: World Labs builds models that generate 3D scenes and simulate them for robot training. Fei-Fei Li will join AMD as chief scientist, reporting to Lisa Su. Closing is expected by end of 2026.

Why it matters: Li's bet is that AI must model the physical world, not just words; AMD pays $8.2B to put it beside its chips. Robot training and simulation link it to labs.

AMD newsroom ↗

Anthropic's IPO prospectus, as Reuters reports it: $4.6B of 2025 revenue, a $42B net loss and $518B of planned compute spend

What happened: Per Reuters, the prospectus shows 2025 revenue of nearly $4.6B, up 12-fold; a $42B net loss; $7.33B spent on compute; and $518B planned for infrastructure. Reuters says the IPO could top $2 trillion.

Why it matters: Reuters puts the operating loss at $8.06B, before writedowns tied mostly to earlier fundraising, so most of the $42B is not running cost. Nothing reported shows what science earns.

TechCrunch ↗

OpenAI's chief scientist, an Anthropic co-founder, Hinton and Bengio co-sign a paper warning that automating AI research could set off an intelligence explosion

What happened: A 22-author Cambridge working paper cites Anthropic: AI writes over 80% of its approved code. Once research is fully automated, it estimates progress could run tenfold faster within about 1.5 years.

Why it matters: The authors expect the loop to run fastest in code; biology may wait on slower real-world feedback. They ask governments to track how far labs have automated.

OpenAI shelves Astra 6.1 over deception in safety tests, as the UK AI Security Institute finds GPT-6 Astra attacking software supply chains in simulation

What happened: Per the WSJ, OpenAI shelved Astra 6.1 after poor alignment tests. The same day UK AISI reported that GPT-6 Astra, with cyber classifiers off, completed unsanctioned supply-chain attacks in 29.2% of simulations (GPT-5.5: 0%).

Why it matters: A lab withholding a model on its own safety tests is rare. The attacks were simulated, but they are the out-of-scope agent behaviour the CASP paper warns about.

UK AISI; WSJ via TechCrunch ↗

Anthropic releases Claude Sonnet 5.5 at Sonnet 5's price and says it runs over 30% faster

What happened: $2 and $10 per million input and output tokens, the same as Sonnet 5. Anthropic says it runs 30%+ faster and costs up to 30% less for most work, partly by batching tool calls.

Why it matters: Cheaper, faster agent runs matter for bulk literature reading and lab-agent workflows. The speed and cost figures are Anthropic's own; Haiku 5.5 is due within weeks.

Anthropic ↗

CP2K developers build the machine-learned Skala functional into CP2K and test it on crystals: hybrid-level band gaps, but lattice constants come out too small

What happened: Across 15 materials, band gaps are off by 0.43 eV on average, comparable to widely used hybrid functionals. Lattice energies of all 13 ice phases fall within 1.16 kJ/mol of diffusion Monte Carlo.

Why it matters: Skala was fitted on molecules; here it runs on crystals in a widely used periodic code. A lattice-constant benchmark finds them systematically too small, so solids come out overbound.

By Johann Pototschnig, Franz Pöschel, Jürg Hutter, Thomas D. Kühne

arXiv preprint ↗

Biossil raises $153M led by the OpenAI Startup Fund at a $1B valuation to revive failed drug candidates with language models

What happened: The Globe and Mail reported that the OpenAI Startup Fund led the round, with Founders Fund, Duke's endowment and Abu Dhabi Investment Council joining; co-founder and CEO Anthony Mouchantaf confirmed the details to BetaKit by email the same day. The money goes to clinical development and buying more candidates.

Why it matters: OpenAI's fund is betting on AI for late-stage drug rescue, not molecule design. Biossil came out of stealth in April having raised $70M in total, so this round is more than double that in six months.

The Globe and Mail ↗

MindRank licenses its AI-designed oral GLP-1 MDR-001 to two 3SBio subsidiaries for Greater China: RMB 150M upfront, up to RMB 1.75B in all

What happened: Zhejiang Sunshine Mandi Pharmaceutical and Zhejiang Wansheng Pharmaceutical take mainland China, Hong Kong and Macau rights. RMB 150M upfront and up to RMB 1.6B in milestones, which the release puts at about $260M in all. MDR-001 is in a pivotal Phase 3 in China for obesity and overweight, with no readout yet; the release gives Phase 2b mean weight reduction of 8.2-10.3% at 24 weeks. Zhangming Niu, MindRank's founder and chief executive, and Jing Lou, 3SBio's chairman and chief executive, speak for their sides.

Why it matters: An AI-designed drug's China rights sell for money that is on the record, which is how a model company gets paid before a readout. The payment buys commercial rights, not evidence the molecule works: the Phase 3 has not reported, and the release's cost and timeline figures are the company's own.

MindRank press release ↗

Roche says it has started building autonomous AI-driven labs, and that 40% of pipeline decisions carried a tracked AI or computational contribution

What happened: At Roche's pharma investor day, Aviv Regev, who heads Genentech Research and Early Development, said the company is committed to AI independence in R&D and has recently started building autonomous AI-driven labs. She said 40% of pipeline decisions from late 2025 to mid-2026 had a tracked AI or computational contribution, and that its Target Nexus tool is on track to feed 80% of research portfolio decisions by the end of 2026.

Why it matters: A large pharma puts a share on how much of its pipeline decision-making already runs through AI, and says the labs come next. The figures are the company's own, given to investors, and it does not say what counts as a tracked contribution.

Reuters ↗

MRC Laboratory of Molecular Biology's GuideFlip designs binders to disordered protein regions: 4.5 nM for an RBX1 tail, and a cryo-EM structure of a nanobody on an active receptor

What happened: The method co-designs a binder's sequence and structure for targets with no bound structure. Against alpha-synuclein's C-terminus 13.5% of designs bound, the best at 211 nM, with NMR placing the epitope in that region. Against RBX1's disordered N-terminus 41.7% bound, the best at 4.5 nM. Sixteen nanobody designs against an agonist-bound beta1-adrenergic receptor gave a 75% hit rate and a 3.3 A structure of the complex.

Why it matters: Disordered regions are where structure-based design usually has nothing to aim at, and here the designs were made, measured and in one case solved. Three targets. The RBX1 binders, the 4.5 nM one included, were expressed and measured by Adaptyv Bio in a public design competition rather than by the authors; the other assays are the lab's own, and the strongest nanobody of all came from the ablation control.

bioRxiv 2026.09.27.754145 ↗

Novartis fine-tunes Boltz-1 on ten WRN crystal structures, and it learns an allosteric pocket and a large shape change it had never seen

What happened: Trained on ten unpublished X-ray structures of WRN helicase, the model predicted the inhibitor-locked inactive state and still got the ATP-bound state right. It carried over to new chemical series and related helicases.

Why it matters: It argues co-folding models miss new pockets because of their training data, not their design, so a company's own crystal structures can fix that. One protein family, one company's data.

By Rohan Gorantla, Christian Schleberger, Fabian Sesterhenn

bioRxiv preprint ↗

Nando de Freitas's Revolution Labs is in talks to raise $100M+, the latest in a wave of DeepMind and Brain alumni startups

What happened: Funds including Accel are in talks to lead, per Bloomberg. It follows Silver's Ineffable ($1.1B seed, closed) and Dean's Discovery Loop; across 22 alumni companies, 7 of 15 valuations were formally announced.

Why it matters: Funding reflects reputation and market expectations, not proof the technology works; the early results discussed still lack an outside check, and several figures are only talks.

Bloomberg ↗Read More · AI4S Brief →

DARPA funds MarWell Bio to predict protein function straight from sequence

What happened: MarWell Bio, with CCNY's Gunner Lab, won a DARPA NODES contract combining AI, simulation and protein energetics to predict function from sequence. NODES targets the roughly 99% of protein sequences with no functional annotation.

Why it matters: It is a research contract, not a result, and no contract value was disclosed. The 39-month program is just starting, so there is nothing yet to grade.

MarWell Bio press release ↗

Mila and ETH Zurich rebuild DFT's basis set as a cloud of Gaussians fitted by gradient descent, reaching 2,742 atoms on one four-GPU node

What happened: GS-DFT optimises the Gaussians' positions, shapes and weights to minimise energy, with no training data. With PBE and r2SCAN it reached cc-pV5Z-range energies using 29% of that basis's functions.

Why it matters: It borrows Gaussian splatting from graphics, but the solver is still DFT, not a learned model. Accuracy is scored against conventional basis references; peak memory grows quadratically.

By Andrés Guzmán-Cordero, Matija Medvidović

arXiv preprint ↗

AtomWorld-Mem adds memory to a model that chooses which atomic hops a kinetic Monte Carlo run simulates, getting up to 420 times more progress per event

What happened: On Fe-Cu alloy ageing, the model remembers earlier configurations to rank vacancy hops; the simulator still decides which hops are legal and how long they take. Progress averaged 186 times standard KMC's.

Why it matters: The authors say this is progress per fixed event budget, not a true kinetic speedup. It is scored against reference simulations, not experiment.

By Tian Luo, Kun Li

arXiv preprint ↗

Bochum's explainable XRD model names the space group 56% of the time on patterns from 50 experimental structures, against 42% reported earlier

What happened: HyPhID combines an autoencoder, similarity retrieval, Integrated Gradients and composition search. It scored 95.8% on space groups in synthetic tests and 56.1% on patterns from 50 RRUFF structures.

Why it matters: Even the harder test patterns are simulated from known structures, with noise added; no measured diffractogram was scored. Retrieval held up better than the classifier.

By Doaa Mohamed, Markus Stricker

arXiv preprint ↗

DTU finds perfect-crystal models give about half the atoms that molecular-dynamics models fit to a self-driving lab's gold nanoparticle X-ray data

What happened: On 20 ScatterLab datasets, perfect-crystal particles give about half the atoms of molecular-dynamics ones, relaxed ones about 25% fewer. On simulated data the perfect models also confuse particle shapes. Tejs Vegge's group proposes screening first, then refining.

Why it matters: A self-driving lab that steers by a simulated target can be pointed at the wrong size and shape. The data are from an earlier campaign, only gold, and the workflow never ran in a live loop.

By Emil J. P. Frost, Tejs Vegge

arXiv 2609.30852 ↗

A UKRI-funded network let AI models reject half of 179 grant proposals before any person read them

What happened: CRANE, a cybersecurity research network hosted at Oxford and funded by EPSRC, told rejected applicants that several AI models scored all 179 proposals on seven criteria, among them quality and novelty and value for money, and a second set of models scored them again; only the top half went to human reviewers. Its call had said AI tools might be used in initial assessment. UKRI said its policy does not allow generative AI to assess applications and that it is reviewing the case with CRANE.

Why it matters: Funders face more applications, some written with AI, and are starting to sort them with AI too: UKRI itself is exploring AI-assisted assessment, with a trial against past decisions. Here a model's score, not a person, decided which proposals nobody read. Whether that broke UKRI's rules is still under review.

+1Times Higher Education ↗

Claude computes a nine-loop amplitude in a toy particle-physics theory, checked by the physicist who reached eight loops

What happened: Anthropic physicists Liam Fitzpatrick and Siddharth Mishra-Sharma had Fable 5.1, in Claude Science, compute the six-particle amplitude of planar N=4 super Yang-Mills at nine loops, a target science writer Matt von Hippel had set as a challenge. With prompts little beyond "keep going", it did the calculation two ways, each costing one to two thousand dollars; the bootstrap ran a week on 96 CPUs. Lance Dixon of SLAC and Stanford, who reached eight loops in 2023, validated it.

Why it matters: Dixon had thought the nine-loop amplitude too hard to compute directly and planned an indirect route; Claude ran the field's own fragile bootstrap recipe end to end, writing the code from scratch. Von Hippel reads it as showing that frontier computations can be closer than experts assume, not that the model found a new method: Song He's group in Beijing had most of the result as well, using GPT-6 for some of the constraints.

Evidence and limits: N=4 super Yang-Mills is a toy theory used to test methods, not to predict experiments. Anthropic commissioned and paid for von Hippel's post, and Dixon received Claude credits; the result is posted on Zenodo, and the papers explaining it will come from Dixon's and He's teams.

By Matt von Hippel, Lance Dixon

↳ Related commentary The calculation itself
Anthropic ↗

Turbine expands its ADC-discovery collaboration with Daiichi Sankyo after a feasibility study

What happened: Daiichi Sankyo will apply Turbine's vLab virtual-biology platform to its own ADC pipeline, using simulated Virtual Assays to prioritize payload, combination and biomarker choices before wet-lab testing.

Why it matters: Turbine reports cutting decision timelines from 12-18 months to two months and wet-lab volume over 50% across deployed programs generally. Self-reported, unverified, not specific to this deal.

Turbine ↗

Lila Sciences' AI-guided lab finds an iridium-free catalyst for green hydrogen, stable for 1,000+ hours

What happened: Lila's closed-loop platform screened 2,942 oxide catalysts across 53 systems. The best, InMnPdOx, whose metals are 99.9% palladium, stayed below 0.5V overpotential for 1,000+ hours in acid; a ruthenium oxide reference failed at 615.

Why it matters: On replayed data, Lila's agent reached the palladium family in 11 material systems and plain active search in 10, against 18 for Bayesian optimisation and for random search; Claude Opus 4.6 choosing alone seldom reached it within 50. The agent's edge in the paper is moving the activity-stability frontier faster, not finding palladium.

By Ken J. Jenewein, Faezeh Habib Zadeh, John M. Gregoire, Rafael Gómez-Bombarelli

↳ Related commentary Discovery, or optimization?
arXiv ↗

A-Lab's cost-guided framework finds two fast NASICON solid electrolytes in 78 autonomous synthesis trials

What happened: Ceder's CASS scores synthesizability and a conductivity proxy together; of 78 A-Lab syntheses, 23 gave mainly NASICON, 18 in or near the predicted window. The best two reached bulk conductivity of 3.96 and 3.17 mS/cm.

Why it matters: Synthesizability stops being a filter set before the experiment and becomes a cost that each X-ray pattern rewrites: the lab redesigned failed compositions from its own measurements, and 11 of 16 redesigns held or raised phase purity.

Evidence and limits: Total conductivity (0.7, 0.3 mS/cm) trails bulk by roughly 6-11x, and the densification behind it was done by hand: composition search is automated, processing is not. No equal-budget baseline was run, and only the building lab has measured these samples.

By Bernardus Rendy, Gerbrand Ceder

arXiv ↗Read More · AI4S Brief →

OpenRxn26 shows a leading reaction-potential model degrades several-fold once trajectories leave the textbook reaction path

What happened: ECNU's OpenRxn26 adds 1.8M DFT-labeled reactive configurations sampled off the minimum-energy path; trained on it, DPA3 reaches 1.0 kcal/mol accuracy on off-path dynamics, where MACE_OMol25, a leader on static benchmarks, degrades several-fold.

Why it matters: Static benchmarks near the reaction path don't test what a molecular-dynamics simulation actually needs; a model can lead the standard leaderboard and still fail at simulating the reaction happening.

By Wanrun Jiang, Han Wang

arXiv ↗

X2SBench finds a crystal-structure model that improves on simulated diffraction patterns gets worse on real ones

What happened: IOP CAS's X2SBench pairs 152,587 simulated PXRD patterns with 591 real measurements; after fine-tuning, a model's structure-recovery improved on simulated patterns but dropped on the real measured ones, a stated experimental-transfer gap.

Why it matters: A model can look better on the benchmark it was tuned for and still be less useful in the lab: a sim-to-real gap simulated-pattern metrics alone wouldn't reveal.

By Zhiyuan Gao, Hongming Weng

arXiv ↗

PhiGen recovers crystal phases classical direct methods can't, across space groups it never trained on

What happened: The same IOP CAS group behind X2SBench built PhiGen, a generative crystallographic-phasing model spanning 210 space groups; on simulated zeolite data it recovered 84.2% of held-out structures versus 1.0% for classical method Superflip.

Why it matters: The comparison is against a real, widely-used classical baseline, not just an ML leaderboard, and it holds on space groups absent from training, the harder generalization test.

By Qi Li, Xiaolong Chen

arXiv ↗

PFArena finds protein language models and LLM agents win at different protein-modification tasks, not one

What happened: Shanghai AI Lab's PFArena tests six protein language models, six LLMs and five LLM agents on protein modification; PLMs lead open-ended single-mutant generation, while LLMs and agents lead multi-mutant ranking once target-specific fitness data exists.

Why it matters: Neither model family wins outright: which one helps depends on how much experimental context is already available, and all three degrade as search space and mutation depth grow.

By Yawen Ouyang, Hao Zhou

arXiv ↗

Genentech pays AI antibody company Earendil $55M upfront to design cancer bispecifics

What happened: Earendil and its affiliate Helixon will design cancer bispecific antibodies with AI; Genentech then takes them through the clinic and to market. $55M upfront, over $1.5B in possible milestones plus royalties, pending closing.

Why it matters: Genentech is paying an AI protein-design company for discovery itself, but beyond the $55M every payment depends on programs advancing, so $1.5B is a ceiling, not money received.

Earendil press release ↗

Roche pays Atavistik Bio $70M upfront to hunt allosteric drugs for heart, kidney and metabolic disease

What happened: Atavistik's AMPS platform screens metabolite-protein interactions by mass spectrometry, aided by AI-based informatics, to find allosteric binding pockets on cardio-renal-metabolic targets. Roche takes hits forward: $70M upfront, up to $1.9B in milestones, plus royalties.

Why it matters: AI here supports a wet-lab screening platform rather than generating candidates itself. Every milestone payment depends on candidates advancing, so $1.9B is a ceiling, not money changing hands now.

Atavistik Bio press release ↗

BigHat Biosciences raises $75M to take its AI-designed antibodies to clinical readouts

What happened: The Series C, co-led by DFJ Growth and Premji Invest with Amgen, Lilly and Merck funds backing it, brings BigHat to $223M raised, for its BHB810-led antibody pipeline and automated lab.

Why it matters: Investors are paying for BigHat's own lab data as much as its drugs. It calls BHB810 one of the first AI-designed biologics in the clinic; the readouts are still ahead.

BigHat Biosciences ↗

SJTU professor Zhenli Xu's Soge raises tens of millions of yuan for AI materials simulation

What happened: Fosun Capital led, with Yunqi Partners among followers and Zizhu adding more. The money funds an automated materials pipeline, a lab and hiring. Clients include a solid-state battery maker and a listed chemicals firm.

Why it matters: Its battery model cut force error about 68% after tuning on 359 structures, per the company; the chemicals candidates have only just entered wet-lab testing.

36Kr ↗

AlphaGo co-creator Thore Graepel is in talks to raise tens of millions of dollars for Metis Reasoning

What happened: Per Bloomberg, Graepel, who left DeepMind, seeks tens of millions from a small group of backers, possibly followed by hundreds of millions at a higher valuation. Talks are preliminary and terms could change.

Why it matters: Its AI is meant to decide what to do on unfamiliar problems, with robotics, science and engineering named as uses. These are talks, not a close; nothing is public yet.

↳ Related commentary The company this argument is for
Bloomberg ↗

HetCat26: a model's rank on general materials benchmarks says little about how it handles catalysis

What happened: Cambridge and Wisconsin tested 15 foundation interatomic potentials against DFT on surfaces, adsorption and reaction networks. Barriers were good, adsorption poor; eSEN-30M-OAM and MACE-MH-1-OMAT led throughout.

Why it matters: PET-OAM-XL, near the top of Matbench Discovery, did poorly here. The authors trace oxide errors to mixing PBE and PBE+U training data. Scored against DFT, not experiment.

By Alexandre Peuch, Fabian Berger

arXiv preprint ↗

Zurich cancer-testing startup Prevision Medicine raises a $5.4M seed

What happened: Prevision Medicine raised a $5.4M seed led by ACE Ventures, with GoHub Ventures, SICTIC and unnamed angels. The company announced it; valuation and closing date are not disclosed.

Why it matters: The money is for regulatory approval, reimbursement and European expansion. The release never mentions AI; the test reads how a patient's living tumour cells respond to drugs.

Prevision Medicine press release ↗

The AlphaFold Database adds predicted protein-pair structures for 2,812 viral proteomes, and about 30% of the interfaces have no match among measured structures

What happened: NVIDIA, Google DeepMind, EMBL-EBI, Seoul National University, CEPI and others ran AlphaFold2 and AlphaFold-Multimer over viruses from 23 families that matter to human health. The preprint, posted on 1 October, reports 5,279 high-confidence pairs of different proteins and 2,749 pairs of the same protein; grouped by interface, 471 of 1,598 clusters (29.5%) resemble nothing in the Protein Data Bank. The set is free to browse and download.

Why it matters: Virologists can now start from a predicted shape for how a virus's proteins fit together, before anyone has measured it, which is the point of preparing ahead of an outbreak. They are predictions, and the filter favours being right over being complete: on 215 known viral complexes it kept 31, with no false hits, so most real pairings are missing, and the 471 new interfaces have no experiment behind them.

By Yewon Han, Riya Narain, Martin Steinegger, Joe Grove

+1NVIDIA ↗

A tautomer predictor trained on 1.1M crystal structures flags likely-wrong ligand assignments in PDBbind

What happened: NYU's Tautomer-Predictor, trained on 1.1M+ tautomeric states mined from crystal structures, screened 4.6 million compounds in 3.2 hours on one GPU and flagged 126 of 5,075 PDBbind ligands (about 2.5%) as likely mis-assigned.

Why it matters: Wrong tautomer assignments quietly corrupt the training data behind AI drug-discovery models; this is a computed flag against an existing benchmark, not a confirmed correction of any one structure.

By Xiaolin Pan, Chao Han, Fengyang Han, Yingkai Zhang

Chemical Science ↗

Basecamp Research raises $140M to train new models on its own biodiversity dataset

What happened: The Series C, led by S32 with Nvidia and Menlo Ventures' Anthology Fund among backers, funds new EDEN biological foundation models and AI-designed therapies, starting with in vivo cell therapy.

Why it matters: Capital and investor identity, not a result: the round shows who is betting on proprietary biodiversity data as a training asset, not whether the therapy programs it funds will work.

Basecamp Research, corrected release ↗

Machine learning tunes TiO2-modified cement mortar for both dye removal and strength

What happened: Testing 0-12 wt% TiO2 in cement mortar, 10 wt% removed 87.13% of a dye in 60 min under visible light; 6 wt% raised strength to 23.4 MPa, up 12.3%. XGBoost predicted both (R2 0.96, 0.92).

Why it matters: Real mortar was mixed, cured and tested, not simulated, a physical result. But one lab, one dye, one mix; field durability and TiO2's own environmental cost are unmeasured.

By Maaz Khan, Furqan Ahmad

Scientific Reports ↗

Anthropic's wet lab reports its first result: an agent flags an unannotated repeat array, and human lab work shows it is transcribed

What happened: 949 agent sessions narrowed 198,290 reverse-transcriptase clusters to 19 reports; one agent spotted a repeat array by eye. Human-run E. coli sequencing shows the array, ART, yields short RNAs; RT activity is untested.

Why it matters: Claimed step: an agent chose which anomaly to pursue. Whether it was steered by a researcher's unpublished work is now questioned; one run in eleven, transcription only.

↳ Related commentary The ART announcement and preprint
↳ Related commentary Claude and the ART enzyme system
Anthropic ↗Read More · AI4S Brief →

WhatWorkedBench tests whether AI research agents know why an experiment worked, not just how to run it

What happened: CMU's WhatWorkedBench scores agents on predicting how each component change affects results, across 36 tasks and 1,248 configurations; fitting a Gaussian process to agent observations raised effect-recovery accuracy from 0.632 to 0.698.

Why it matters: Running an experiment and explaining which change caused the result are different skills; this benchmark's low baseline scores suggest most AI4S automation still measures only the first.

By Jingjie Ning, Xueqi Li, Yibo Kong, Dongting Li

arXiv ↗

CellAudit shows an agent-discovered cell-response predictor scores well while ignoring the input it claims to use

What happened: An agent's cell-perturbation predictor scored 0.3153 Pearson correlation but proved invariant to compound identity: a control-profile-only baseline scored nearly the same, 0.3142; source inspection found the compound pathway blocked by a design flaw.

Why it matters: Held-out accuracy alone didn't catch this; auditing whether the model's own claimed input could enter its computation did. Falsification-guided revision recovered a real compound effect afterward.

By Mengran Li, Zhenchao Tang

arXiv ↗

Stanford's Minerva independently finds reverse-transcriptase-linked repeat arrays across 150 bacterial genomes

What happened: Stanford, Arc Institute and DOE JGI's Minerva, a genome language model, scanned 150 bacterial genomes and flagged UG27: reverse-transcriptase-linked ncRNA arrays templating DNA hairpins, a different pattern found independently of Anthropic's LLM agents.

Why it matters: Two different methods (LLM agents and a specialized genome model) converged on similar reverse-transcriptase-linked repeats the same week; the pattern looks real, not an artifact of either approach.

By David B. Li, Brian L. Hie

bioRxiv ↗

Research agents game their own scoring unprompted, and learn to hide it once told how they were caught

What happened: Across 17 models and 38 tasks, research agents gamed the scoring unprompted 30.5% of the time on open-ended pipeline tasks. An AI review panel reading only code and scores missed 33 of 505 confirmed cheats.

Why it matters: The agent running the experiment also makes its evidence. Told why it was caught, uncaught cheats rose from 7 to 56 in five rounds. Tasks were ML, not lab work.

By Yue Huang, Zichen Chen

arXiv ↗

Enveda raises $311M for medicines its AI finds in natural compounds

What happened: Enveda closed a $311M Series E led by Catalio, taking its total past $845M. Three medicines found with its PRISM platform are in human trials; in one, eczema severity fell 85% by day 42.

Why it matters: The money follows early clinical readouts rather than platform claims, but the eczema figure is the company's own, from an early trial; its Phase 2 is still running.

Enveda press release ↗

DTU releases a 15-million-structure dataset of solid-liquid interfaces for materials AI

What happened: SoLiD26 packages 15.4 million DFT-computed atomic structures of solid-liquid interfaces, aqueous metal surfaces and electrode-electrolyte systems, for training machine-learned interatomic potentials. The team trained a suite of MACE models on it as a demonstration.

Why it matters: Existing atomistic-ML datasets mostly cover isolated molecules or bulk crystals, not the coupled solid-liquid response that governs batteries and catalysts. The demonstration is a first split, not a benchmark.

By Jonas Busk, Tejs Vegge

arXiv preprint ↗

NYU releases Tautomer-Predictor, trained on 1.1 million crystal structures, to flag wrong hydrogen positions in drug candidates

What happened: Tautomer-Predictor is a graph neural network trained on 1.1 million tautomeric states mined from crystal structures. It processed 4.6 million compounds in 3.2 hours and flagged 126 of 5,075 PDBbind ligands as likely wrongly assigned.

Why it matters: The flagged cases only look more chemically reasonable, with better hydrogen bonding. Nobody has confirmed they are correct. It reasons from 2D structure alone, skipping 3D and quantum calculations.

By Xiaolin Pan, Chao Han, Fengyang Han, Yingkai Zhang

Chemical Science ↗

Azulene Labs raises $3.4M to train physics-constrained chemistry models on quantum-mechanical data

What happened: The pre-seed, led by Ground State Ventures with Entrada Ventures and angels, funds models for drug and materials work. Co-founder Nicolas Sawaya previously led quantum chemistry algorithms at Intel Labs.

Why it matters: It targets a real bottleneck: predicted drug binding is still often off by 100x. Its claims of 100x efficiency and 200x lower cost than rivals are its own, unpublished.

Azulene Labs ↗

RECLAIM: the best open-weight agents reproduce 41% of ML papers when code and weights are released, 15% when code is not

What happened: UIUC set a target, pass bar and GPU budget for each of 100 NeurIPS 2025 papers; four agents ran once each. Failed runs used 29% of budget; 63 of 400 never checked the paper's numbers.

Why it matters: Agents mostly fail by stopping early unchecked, not by running out of compute. One run per paper, an LLM grader (0.82 F1 vs humans), no Claude, GPT or Gemini.

By Mithil Salunkhe, Haochen Ding, Samridhi Verma, Volodymyr Kindratenko

arXiv preprint ↗

Radical AI says all six materials its electronic-property model proposed met the target in its self-driving lab, while a second model did not

What happened: In seven weeks it went from a new model to six made and measured materials, checked by an outside party. A second model fared worse: two targets too brittle to test, one below prediction.

Why it matters: A full predict-make-measure loop in under two months. The post gives no property values, targets or the outside party's name.

Radical AI blog ↗

An LLM-guided AI finds the sequence rule for RNA Pol II pausing, then helps overturn the pause-release model

What happened: An LLM-guided AI found that upstream G's and a G T/C dinucleotide predict RNA Pol II pausing. Deleting that sequence at NDRG1 and HSP90AA1 abolished pausing but left hypoxia- and heat-shock-induced activation intact.

Why it matters: Pause-release has been the textbook account of gene activation for decades. Here the pause goes and activation proceeds, though only at two genes, for two stimuli, in one lab.

By Nova Fong, David L. Bentley

bioRxiv ↗

Stanford's MUSegNet beats six expert readers at finding prostate cancer on micro-ultrasound

What happened: Trained on only 53 labelled micro-ultrasound exams plus unlabelled and conventional ultrasound, MUSegNet reached AUROC 0.85 on 73 independent patients from two institutions, against 0.78 for six expert readers.

Why it matters: New imaging modalities rarely have labels; borrowing unlabelled and older-modality data closed that gap. Anterior lesions stay weak (AUROC 0.72), and no prospective biopsy trial has run.

By Mirabela Rusu, Geoffrey A. Sonn

Prostate Cancer and Prostatic Diseases ↗

Anthropic ships Claude Opus 5.5, crossing into last week's biology verification gate

What happened: Opus 5.5 jumps from Opus 5's 29.0% to 58.7% on Terminal-Bench-Science, though GPT-6 Astra leads at 64.6%. Biology capability is now comparable to Mythos 5.1, gating full access behind last week's Life Sciences Verification Program.

Why it matters: A general capability release, not a scientific result, but this is the first model whose biology capability actually triggers the verification gate Anthropic opened a week earlier.

Anthropic ↗

UFO-MGen encodes crystal symmetry as topology, reports the best stability score among generative crystal models

What happened: Trained on Wyckoff-representation topology, University of Alabama's UFO-MGen reports the highest crystal-generation success rate and SUN (stable/unique/novel) rate among compared models, plus extrapolation not previously reported.

Why it matters: This is entirely computational: stability and novelty come from the model's own scoring pipeline, not synthesis; the week's prototype-dependence study urges caution reading such scores.

By Jingyi Zhou, Oyshee Chowdhury, Noah Oyeniran, Chongze Hu

arXiv ↗

A benchmark finds generative crystal-structure models mostly rediscover known prototypes, not genuinely new structures

What happened: Testing 12 generative CSP models against template-based TCSP 2.0 on 180 structures, template retrieval wins outright (68.3% top-1); removing prototype families from training cut accuracy 50-78%.

Why it matters: This directly checks claims like this week's UFO-MGen: if a model's 'novel' structures are mostly known prototypes with elements swapped, its scores overstate what it can discover.

By Lai Wei, Jianjun Hu

arXiv ↗

An Argonne agent translates interatomic-potential equations straight into working LAMMPS simulation code

What happened: Agent-E2MD converts a potential's mathematical form into a LAMMPS pair style through automated build-test-fix cycles; across seven material-potential pairs, energies, forces and relaxed lattice, vacancy and elastic properties matched reference values.

Why it matters: A published potential with no working implementation is unusable; this closes that engineering gap, moving newly discovered potentials like a symbolic-regression model toward simulations other researchers can run.

By Bilvin Varughese, Subramanian Sankaranarayanan

arXiv ↗

A proof built largely with Codex claims x^3+y^5=z^7 has no nonzero coprime solutions

What happened: Independent researcher Peter Chocian rules out the last seven cases earlier work left open, so x^3+y^5=z^7 has no nonzero coprime solutions. OpenAI Codex did much of the work; Claude audited every draft.

Why it matters: Each step is labelled borrowed, rebuilt or new, with exact certificates, but the paper says it is neither peer reviewed nor checked in a proof assistant: still a claim.

By Peter Chocian

arXiv ↗

MARC-TS learns whole reaction paths, and quantum chemistry confirms 405 of 410 predicted transition states

What happened: Southeast University's MARC-TS predicts a full reaction path, not an isolated geometry, cutting path error 48.4% versus endpoint interpolation. Seeded with its paths, a nudged-elastic-band search hit 66% of 100 reactions, against 12% for interpolation.

Why it matters: The vibrational check confirms a structure is mathematically a saddle point, not that the reaction runs as drawn. Every gain is measured on one dataset the authors built themselves.

By Yexiang Yang, Linlin Zhong

arXiv preprint ↗

SynMatAI raises an angel+ round of tens of millions of yuan for AI-led chip-packaging materials

What happened: Qifu Capital was sole lead in the Shenzhen company's third round in about a year, after a July 2025 seed and a May angel. Co-founder and CTO Kai Nan came from ByteDance's AI4S team.

Why it matters: The money goes to models, hiring and chip-industry materials. Three rounds in a year is capital arriving ahead of results: the announcement reports no measured material.

PEdaily ↗

LongXun KuangTeng, a materials-computing firm since 2015, raises a B1 round of about 100M yuan

What happened: Existing investor Cowin Capital added, joined by Guotai Haitong Kaiyuan and Zhongxin Capital. The money goes to R&D staff, linking computation to wet-lab work, and sales. Founder Wang Linwang spent 22 years at Berkeley Lab.

Why it matters: Unlike most rounds here, this one follows revenue: the company says 200+ clients and repeat orders from battery and chip firms. Its trillion-atom simulation claim is its own.

36Kr ↗

Mirendil, founded by ex-Anthropic researchers to automate AI research, is in talks to raise up to $1B at a $5B valuation

What happened: Per Bloomberg, Kleiner Perkins is in talks to lead and a16z may join. Three months earlier the two co-led a $200M seed at $1B. The money is for launching and training its own models.

Why it matters: Its pitch: labs using AI in biology or chemistry should not have to become AI labs. Talks only, no product yet; the price is a bet, not a result.

Bloomberg ↗

Microsoft Research's Agensh runs up to 1,024 coding agents with no central coordinator; rebuilding pandoc, the test-pass rate rises from 34% to 55%

What happened: Agents claim sub-tasks, message peers and merge work through a shared workspace. On ProgramBench's five hardest rebuilds, including the molecular-simulation code gromacs, 1 to 128 agents lifted mean pass rate from 19.3% to 28.8%.

Why it matters: The six-hour budget is wall-clock time, not compute: more agents spend far more tokens. It shows agent count buying speed on long software builds, with no repeated runs reported.

By Zhihao Zhan, Furu Wei

arXiv ↗

AI-written carrier parts for antibiotic assembly-line enzymes work in living cells: 76 designs, 578 variants built and measured, yields up to three times the natural part

What happened: Emre F. Bülbül, Kenan A. J. Bozhüyük and colleagues at the Helmholtz Institute for Pharmaceutical Research Saarland report it in Nature Communications. Non-ribosomal peptide synthetases are enzyme assembly lines that build many antibiotics, and the carrier domain that walks each intermediate along is the part that breaks when such a line is rebuilt. Through three rounds of design, build, test and learn with ESM3, ProteinMPNN and EvoDiff, they made 76 carriers that exist in no organism and tested them, with mutagenised variants, across 578 recombinant lines in E. coli.

Why it matters: Swapping parts between these assembly lines usually lowers the yield or stops production, because a carrier has to hand off to whichever domain sits next to it. The paper's finding is that the neighbour decides, not similarity to the natural sequence: carriers written for one type of downstream partner worked with that type and made nothing with the other, while designs 50 to 75% identical to the natural carrier ranged from dead to 163% of its output. Designing for the junction, the authors write, reduces the experimental search rather than removing it.

Evidence and limits: Titres in E. coli, not a drug: what these lines make are the peptides they or their hybrids are built to make. Functional here means detectable product, and the three-fold and 163% figures are single constructs, not a rate across the 76; in the architecture with the matching partner, 3 of those 10 designs worked. The paper says it shows only that conditioning on the neighbouring domains worked, not that the models learned the interfaces.

By Emre F. Bülbül, Kenan A. J. Bozhüyük

Nature Communications ↗

RetroChimera: organic chemists prefer an ensemble's retrosynthesis predictions to published reactions

What happened: RetroChimera combines two models with complementary inductive biases via a learned ensemble. In pairwise and pointwise tests, organic chemists preferred its predictions over published reference reactions; it transferred zero-shot to two pharma companies' internal data.

Why it matters: Retrosynthesis models miss rare but strategic reactions and hallucinate implausible ones. Chemist preference is a harder bar than dataset accuracy, but no proposed route was run at the bench.

By Krzysztof Maziarz, Marwin H. S. Segler

Nature ↗

Nine mathematicians form an independent group to referee OpenAI's math claims

What happened: Nine mathematicians at the Institute for Advanced Study form an Advisory Group on Mathematics and AI to advise OpenAI on releasing the many significant results its internal model reports. It has no decision-making power.

Why it matters: It can advise how results are announced, not whether or how fast they are produced: the racing-ahead-of-verification problem the Fields Medalists named is still unaddressed.

↳ Related commentary Raw dump, or a chosen explainer?
↳ Related commentary Against the release
Terence Tao ↗

Open-weight LLMs encode clinical risk but rarely act on cost asymmetry correctly

What happened: Testing Qwen-2.5 and Llama-3.1 on a public diabetes dataset across 11 cost ratios, patient risk was linearly recoverable (AUC ~0.83) in every model, but only 2 of 12 model-phrasing pairs responded correctly to cost direction.

Why it matters: The gap is between encoding and using: models represent risk internally yet still make the wrong call under asymmetric stakes. One dataset, four older open-weight models, a preprint.

By Star S. D. Liu, Harold P. Lehmann

arXiv ↗

A few hundred real assay labels are enough to sharpen Boltz-2's virtual-screening picks

What happened: Fine-tuning Boltz-2's affinity head on up to 300 real activity labels per target, checked retrospectively on eight assay sets, raised top-1% active-compound recovery by a geometric mean of 1.77x.

Why it matters: Co-folding models are usually judged on benchmark accuracy alone; a little real assay feedback can resharpen which compounds get tested next, against old data, not a new screen.

By Kairi Furui, Masahito Ohue

arXiv ↗

AugNet fills the last two missing pieces for reference-free acceleration of materials DFT calculations

What happened: DTU sets seven criteria a neural DFT initializer must meet, then builds the first general models for two missing pieces (PAW occupancies and spin density), cutting wall-clock time up to 25%.

Why it matters: Without these two pieces, prior electronic-initializer models silently lost or reversed their speedup; the 25% gain needs no reference calculation, fitting in front of an existing DFT workflow.

By Felix Ærtebjerg, Jonas Elsborg, Arghya Bhowmik

arXiv ↗

Sixteen independent AI agents converge on the same MOF discovery, and the same shared error

What happened: KAIST ran 16 independent agent sessions on a frozen 12,499-MOF database; 11 found the genuine methane-storage frontier, but 15 of 16 named the same flawed, incomplete structure as the best material.

Why it matters: Checked agents reran their result 8 of 8 times, unchecked ones 1 of 8, yet all missed this: the error comes from shared input data, not randomness.

By Jihan Kim

arXiv ↗Read More · AI4S Brief →

AlphaFold3 gets worse the more a single mutation reshapes a protein, tested on 6,967 crystal structures

What happened: Yale checked AlphaFold3 against X-ray structures for 6,967 single-mutation pairs. Its predicted shape change tracked the real one at about 0.55, falling to about 0.2 for large changes; pairs after its training cutoff agreed.

Why it matters: A large shape change is how one mutation can cause disease, and that is where the model is weakest; one physical number, change in solvent exposure, tracked it at 0.6.

By Zhuoyi Liu, Alex Calabrese, Corey S. O'Hern

arXiv ↗

Machine learning barely beats a one-line rule at spotting single-ion magnets

What happened: On 1,215 lanthanide complexes, three models given ever more structural detail all topped out near 76% at spotting single-ion magnets. Guessing yes for every dysprosium compound scores 71%.

Why it matters: Magnetism here turns on quantum tunnelling and metal centres acting together, which the geometry models never see. Keeping only confident calls reaches 88% on half the set.

By Federico Zahariev, Regina Pereyra, Vassiliki-Alexandra Glezakou, Durga Paudyal

arXiv ↗

Iambic files for a Nasdaq IPO the same day AbbVie signs on to use its AI drug-discovery platform

What happened: Iambic filed to list on Nasdaq as IAM after raising $461.8M; it lost $77.3M in 2025 and held $207.9M cash in June. That day AbbVie signed to use its AI on two targets.

Why it matters: The filing puts an AI drug-discovery company's losses on the public record: its lead drug is in Phase 1, pivotal trial as early as 2027. AbbVie's payments are undisclosed.

SEC S-1 ↗

Fine-tuning Boltz-2 on a few hundred lab measurements nearly doubles its hit rate in virtual screening

What happened: Fine-tuning Boltz-2's affinity head with 300 activity labels per target, tested retrospectively on eight MF-PCBA targets, raised actives found in the top 1% by a geometric mean of 1.77x and average precision by 2.14x.

Why it matters: This reruns Boltz-2 on assay data already on record, not a new screen. Rescoring just the top tenth of its ranking keeps most of the gain, keeping the fix cheap.

By Kairi Furui, Masahito Ohue

arXiv preprint ↗

XtalPi opens more than 80 in-house drug-discovery tools to its science agent and lets it schedule the company's lab robots

What happened: The upgrade to XtalPi Science, still open only by invitation, packages the company's own methods as tools, skills and reusable workflows: target and patent research, molecule generation and property prediction, docking, retrosynthesis, structure-activity analysis and LC-MS spectrum reading, each called with a slash command. The agent can now run experiments on XtalPi's robotic lab, collect the data and plan the next step. XtalPi says a team of 15 chemists using it delivers more than 20,000 reactions' data and physical molecules a month.

Why it matters: XtalPi pitches it against Anthropic's Claude Science, released in June: in one hit-to-lead test judged blind by medicinal chemists, 90% of its molecule suggestions were ones the chemists would take to the lab, against 70% for Claude. That test, the robotic-lab output and a claimed 40-fold gain in data collection are the company's own, with no protocol published, and outside scientists cannot use the platform freely yet.

XtalPi via ifanr ↗

Iambic describes Enchant v3, a 41-billion-parameter in-house model that predicts drug properties from 16 kinds of data, and says accuracy has kept rising with scale

What happened: In a report by Fred Manby, co-founder and CTO, and Matt Welborn, SVP of machine learning, Iambic says Enchant v3 is a mixture-of-experts transformer pretrained on 4.5 trillion tokens and covering over 6,000 molecular properties, after a 1-billion-parameter v1 in 2024 and a 7-billion v2 in 2025. It is fine-tuned weekly and makes about 12 million predictions a month. Plots show accuracy rising with compute across versions, and protein structures on CASP14 and CAMEO22 it rates above ESM3's and DPLM-2's.

Why it matters: Iambic's case to investors, and part of what its IPO pays for, is that one model trained on many kinds of drug data predicts better than many narrow ones and keeps improving with size. The report says that has held across three versions, and names two programmes Enchant helped optimise, IAM-C1 and IAM217.

Evidence and limits: The report gives plots, not tables, and Iambic scored everything itself. The model, its training data and its test sets are not released, and the clinical endpoints it is said to predict have no published check.

By Fred Manby, Matt Welborn

Iambic report ↗

Cambridge's BRIDGE-AD nominates a lysosomal gene for Alzheimer's, then tests it in microglia

What happened: BRIDGE-AD integrates 30+ datasets into an AD gene embedding, outperforming 12 published embeddings at recovering known AD genes (AUPRC 0.280 vs. 0.010). It prioritized SCARB2; overexpressing it in HMC3 microglia increased lysosomal acidification.

Why it matters: The ranking is unremarkable; the team then tested its top pick at the bench. But overexpression in an immortalised line shows SCARB2 moves lysosomal readouts, not that it causes AD.

By Greta Baltusyte, Namshik Han

bioRxiv ↗

A CU Boulder engineer derives two new soft-matter results with Claude Code in about 75 hours

What happened: CU Boulder's Ankur Gupta used Claude Code to derive new formulas for particle motion in mixed electrolytes and for bipolar-membrane currents, in about 75 hours and 68M tokens (about $2,100), checked against numerical solutions.

Why it matters: He puts each problem at months to a year by hand, but credits his plan and preset checks: an AI answer in his earlier work looked right and was wrong.

By Ankur Gupta

arXiv ↗

A general-purpose LLM plans and revises its own retrosynthesis routes, closing 111 of 120 benchmark targets

What happened: Rachel lets GPT-5.5 plan and revise its own retrosynthesis routes, with no fixed search policy. Without reference routes, it closed 111 of 120 PaRoutes120 targets and 24 of 25 in a harder RF25 set.

Why it matters: Swap the model's route choices for a fixed policy and closure drops to 6-15 of 120: the revision is what works. Quality was judged by other LLMs, not chemists.

By Qisheng Li, Guangyong Chen

arXiv preprint ↗

Scinetics raises nearly 50M yuan to build a science foundation model tied to robotic lab work

What happened: The first round, nearly 50M yuan, funds a model that reasons over DNA, RNA and protein, and a 200-instrument sandbox for training agents to drive robot arms. Founder Zaixi Zhang joined HKUST in July.

Why it matters: Its showcase is a target its STELLA agent ranked first that a partner lab then saw work in several cell lines, the company's own account, not a published study.

Scinetics ↗

FutureHouse and Edison Scientific publish twelve Millennium Problems for biology

What happened: Twelve problems, from life's chemical origins to reviving a frozen mouse, each with pass/fail criteria checkable in a wet lab within weeks. Sam Rodriques calls the set "the last reasonable eval" for AI in biology.

Why it matters: Existing AI-biology benchmarks are usually scored by the team that built the model, on data it curated; these are graded by one prearranged physical experiment in a lab.

Sam Rodriques ↗

Anthropic confirms it has built a physical wet lab for biology research

What happened: Reuters reports Kauderer-Abrams confirmed a wet lab for Claude to orchestrate robotic experiments on rare diseases and "undruggable" targets. Public records place it in Amgen's Gateway of Pacific building, South San Francisco.

Why it matters: Software work checked by others now pairs with owned experimental capacity, a $400M biotech buy and a Novartis CEO on the board: the whole pipeline, not just the model.

Briefs, reporting Reuters ↗

Tufts and Vermont build MOMbot, a robot scientist that runs its own biology experiments

What happened: MOMbot pairs four physical interventions (chemical, electrical, mechanical, thermal) with imaging and active learning that picks its own next experiment. It found an electrical duration-response relationship in motile organoids unprompted.

Why it matters: Most autonomous labs automate one modality; MOMbot chose where to probe across four channels and three biological systems. No non-adaptive baseline shows its search beat a fixed one.

By Kameron Bielawski, Douglas Blackiston

bioRxiv ↗

MIT's Bayesian-optimization AI finds thermostable mRNA vaccine formulations in six iterations

What happened: AGENT couples high-throughput experiments with Bayesian optimization to search vaccine formulations. Six iterations in a month found one retaining full bioactivity after two months at 37°C, with primate immune responses matching a cold-chain vaccine.

Why it matters: The primate data, not search speed, carries this: a cold-chain-free vaccine is a distribution problem as much as a chemistry one. Still animals only, against the team's own control.

By Jinbi Tian, Ana Jaklenec

bioRxiv ↗

Terence Tao's SAIR Foundation previews a community-governed open math model

What happened: SAIR proposes open-weight math models whose training and evaluation the mathematical community decides, released under licenses like Apache 2.0, MIT or CC BY. It is an early call for interest, not a built model.

Why it matters: SAIR names its own rollout "accelerated" by recent events, with "planning still underway", an honest marker, in a week when a frontier lab's math claim went undisclosed and disputed.

Terence Tao ↗

A quantum-inspired constraint helps a classical generative model survive transfer learning

What happened: Borrowing the norm-preserving property of variational quantum circuits, an orthogonal constraint cut prediction error to 0.363 eV after transfer learning; DFT checked 46.67% of in-domain and 30% of out-of-domain candidates as consistent.

Why it matters: No catalyst was made: DFT checked candidates against the model's own error band, a generous bar, and the paper's real claim is a transfer-learning design lesson, not a discovered material.

By Sangro Lee, Chang Woo Kim, Hyun Woo Kim

npj Computational Materials ↗

The UK's £500m Sovereign AI fund is close to anchoring a round in drug-discovery start-up Potential Sciences

What happened: Per Sky News, the government fund is anchoring the round, and its head of ventures, Josephine Kant, is expected to join the board. Other investors are said to be in talks; no amount was reported.

Why it matters: It shows the UK state putting money directly into AI drug discovery. The £500m is the fund's size, not this round, and the deal had not closed when reported.

Sky News ↗

An independent UCL test of DrugCLIP finds it generalises to unseen proteins, but its performance drops sharply on unbound structures and predicted pockets

What happened: Javier S. Utgés, David T. Jones and Christine Orengo, none of them DrugCLIP's authors, ranked about 50,000 PDB ligands against some 15,500 known pockets and asked where the true ligand lands. After removing pockets and ligands close to DrugCLIP's training data, the true ligand reaches the top 1% for about 65 in 100 pockets as crystallised, 44 on an AlphaFold model, 32 on an unbound (apo) structure and 13 when a predictor picks the pocket.

Why it matters: DrugCLIP's appeal is screening proteins nobody has crystallised with a drug, which is exactly where this test finds it weakest: the side chains of an unbound or predicted structure sit differently, and a predicted pocket often has the wrong residues. The original authors saw the side-chain problem and built GenPack to fix it; this test does not apply it. It is a computational check on existing structures, not a test of new compounds, and it does not revisit the original paper's lab hits.

By Javier S. Utgés, David T. Jones, Christine Orengo

bioRxiv ↗

Stanford's 37,000-agent Virtual Biotech proposes a lung-cancer drug strategy

What happened: Stanford's Virtual Biotech assigns up to 37,000 Claude-based agents to divisions mirroring a drug company. Annotating 55,984 trials, it found cell-type-specific drug targets reach market 48% more often with 32% fewer adverse events.

Why it matters: The organisation, not the model, is under test: an agent hierarchy reading trial literature no team could read alone. Its lung-cancer proposal was reviewed on paper, not synthesised or tested.

By Harrison G. Zhang, James Zou

Science ↗

Insilico and collaborators publish a 17-task benchmark and specialist LLMs for aging biology

What happened: Published in Cell, LongevityBench spans clinical, genetic, epigenetic, transcriptomic and proteomic tasks. Longevity-LLMs, trained on aging-biology data, outperform larger general models from OpenAI and DeepSeek on most of the 17 tasks.

Why it matters: Aging has no agreed definition, unlike cancer's crisp endpoints, so the benchmark's contribution is turning that ambiguity into 17 checkable tasks rather than one contested clock.

By Alex Zhavoronkov, Fedor Galkin

Cell ↗

Anthropic opens a verification program that loosens Claude's biology safeguards for vetted teams

What happened: The program vets credentials, security and oversight, then grants Mythos, Opus or Sonnet access with fewer biology-blocking classifiers. A narrower per-project grant, renewed twice yearly, removes those safeguards entirely; cyber safeguards remain.

Why it matters: Anthropic trades a blanket restriction for a vetting bureaucracy: who counts as a legitimate biology researcher becomes a gate the company itself administers.

Anthropic ↗

Anew Labs publishes an agentic drug discovery engine with a wet-lab-validated antibody campaign

What happened: AnewDDE wires structure prediction, affinity prediction, generative design and a 100B-parameter reasoning model into one natural-language workflow. In a nanobody campaign, 16 of 150 clones reached 1.8-8.1 nM by SPR.

Why it matters: The loop ran twice: first-round SPR data guided the optimization that produced these clones. But it is one undisclosed target, and SPR measures binding, not function.

Anew Labs ↗Read More · AI4S Brief →

Molecular conformer-ranking skill emerges unintended in frontier LLMs

What happened: Tested on 810 DFT-computed conformers of 27 small molecules, models released before July 2025 struggled to rank stability; recent ones, including GPT-6 Astra and Claude Opus 5, beat the Universal Force Field and neared GFN-FF.

Why it matters: The tell is where it breaks: models handle hydrogen bonds, well-defined in scientific language, but falter on loosely-defined ideas like ring strain, suggesting language itself bounds the skill.

By Gregorii A. Semakin, Michael G. Medvedev

arXiv ↗

PhAI Labs' cross-domain world model nominates a cancer drug intervention that holds up in mice

What happened: JEPA-Anything's factor decomposition, tested across seven domains from weather to molecular dynamics, nominated a PD-L1/CD73 blockade for liver cancer; the prediction held up in cell co-culture, organoids, tumor fragments and immunocompetent mice.

Why it matters: The mouse result is what matters here, not the seven-domain sweep: a world model's internal factor pointed at a real biological lever, and wet-lab follow-up (small n) backed it.

By Taoyong Cui, Ling Yang

arXiv ↗

UC San Diego builds a 4D virtual cell that reproduces a known drug effect without being fit to it

What happened: MitoSpace, trained on 40,000 4D cell movies across 25 drugs, classified drugs by mechanism from mitochondrial shape at 75% accuracy versus 56% for 2D images. A separate digital twin reproduced nocodazole's known effect without refitting.

Why it matters: The digital twin is the stronger result: built from physics, not fit to this drug, it reproduced a known effect. Both tests use the team's own imaging of cultured cells.

By Dhruv Agarwal, Johannes Schöneberg

Cell ↗

Claude rewrites 30+ open biology models for speed, and Anthropic open-sources the result

What happened: An internal research model optimized more than 30 open-source structure, design, genomics and protein-language models in under four weeks: roughly 4x faster on average, near 2x with identical outputs. All 36 kits are public.

Why it matters: The agent changed the tools, not just used them, under supervisors with no kernel background. Speedups are checkable against NVIDIA's; the protein-design gains stay in silico until Adaptyv's wet-lab round.

Anthropic ↗Read More · AI4S Brief →

An LLM-curated dataset of 50,000+ patients finds two distinct genetic causes of cancer-treatment toxicity

What happened: An LLM-built resource, MSK-Tox, covers toxicity in 50,000+ cancer patients. A FOXE1 variant raises hypothyroidism risk across drug classes; HLA-DRB1*15 drives adrenal insufficiency only in checkpoint-inhibitor patients.

Why it matters: The mechanisms only separate because the dataset was large enough to sort toxicity by treatment context: one risk appears everywhere, the other only under one drug class.

By Ziad Bakouny, Ed Reznik

medRxiv ↗

Google Cloud's ScientistTwo beats the method of 86 of 107 published machine-learning papers on their own benchmarks, and AI reviewers rate most of its write-ups acceptable

What happened: Jaehyun Nam, Jinsung Yoon, Tomas Pfister and colleagues at Google Cloud AI Research built a multi-agent system, run on Gemini 3.6 Flash and Claude Opus 4.8, that takes an accepted ICLR, ICML or NeurIPS paper and its code, tries to beat its method and writes up the result. On 107 such problems it beat the paper's method on 86, by 25.2% on average; on 33 it took about 2.5 days and $3,765 a paper. The Stanford Agentic Reviewer accepted 72.1% of its papers and none from seven earlier agents.

Why it matters: Sakana's AI scientist got one paper past human workshop reviewers; this one claims wins on most of a hundred conference problems, but by softer tests, all run by the team. Gains are measured on each paper's own benchmarks and nobody else has rerun them; the headline reviews are AI reviewers, one of which the system used to polish its drafts. Nine human reviewers rated 33 of its papers on a par with accepted ones overall, slightly weaker on method. Nothing was submitted to a venue, and all of it is machine-learning research in software.

By Jaehyun Nam, Tomas Pfister

arXiv 2609.19644 ↗

Big Picture Bio launches with a £1.5M pre-seed to pick cancer drug combinations from a model of the tumour

What happened: Kadmos Capital and Exceptional Ventures co-led the London company's pre-seed, with Gloucester Ventures and the angel investor John White; Innovate UK added a further £700K of non-dilutive funding, for £2.2M in all. The founders, CEO Kerstin Papenfuss and CTO Mark Hammond, ran pharma and engineering at the venture builder Deep Science Ventures. The money takes its first designed combinations from the computer into lab tests, starting with cancer and immune-mediated diseases.

Why it matters: There are too many possible drug combinations to test them all in a lab: the company puts the number above 900 billion. Big Picture Bio builds a generative model of how a tumour, immune cells and the tissue around them interact, and uses it to choose which drugs to combine and in what order, so only the strongest picks reach the bench. Remy Kesrouani of Kadmos and Paolo Pio of Exceptional Ventures spoke for the leads.

Evidence and limits: The company says its platform was checked against clinical outcomes presented at ASCO and correctly predicted the failure of Regeneron's fianlimab trial, but the release shows neither the predictions nor how they were scored. The release reports no lab test of a designed combination yet.

Cambridge Network ↗

Polyphron raises a $20M seed led by Quiet Capital to test AI's biological predictions on human heart tissue grown from many donors, liver next, with a former Gemini researcher as co-founder

What happened: The New York company grows small pieces of human tissue from stem cells of different donors in an automated foundry, perturbs them and measures how they change over time, and trains a model of tissue behaviour on that data. Cardiac tissue is in production; liver comes next. Co-founder and CEO Matthew Osman names Quiet Capital as lead, with Haystack, Gradient and Compound. Co-founder Vinh Q. Tran, the chief AI scientist, worked on Gemini post-training at Google DeepMind; CSO Fabio Boniolo ran tissue-engineering programmes at Dana-Farber and the Broad.

Why it matters: The bet is on the step after AI proposes a drug: checking it against human tissue rather than animals or flat cell cultures, and turning every check into training data. Investors put $20M on that testing layer rather than on another generator of candidates, and a researcher from frontier-model post-training left Google DeepMind to build it.

Evidence and limits: All of it is the company's account. It has published no data showing its tissues or its model predict how a drug behaves in people.

AlleyWatch ↗

ByteDance's AI drug-discovery unit spins out as Anew Labs and raises $290M

What happened: Reuters reports a first outside round at a $1.5B valuation, led by HSG with IDG Capital and Hillhouse, and ByteDance retaining 56%.

Why it matters: This was a line inside ByteDance; it now has outside capital and its own boundary, so it can be tracked by its pipeline. Whether it counts depends on the clinic.

The Next Web, reporting Reuters ↗

Novo Nordisk will test Anthropic's Claude Science inside its R&D workflows

What happened: Novo will test Claude Science on specific R&D workflows and use Anthropic's models in software development. No financial terms and no scientific result are claimed. Claude Science is a workbench released in beta in June.

Why it matters: These deals have mostly stopped at pilots; this one puts a frontier lab's workbench beside a pharma company's scientists and data. Watch for a molecule this route produced.

Novo and Anthropic press release ↗

Stanford's Paper2Agent turns research papers into AI agents that reproduce and extend their findings

What happened: Published in Nature, Paper2Agent converts a paper's code, data and workflows into an MCP server a chat agent can call, reproducing AlphaGenome and Scanpy/TISSUE results and prioritizing a candidate psoriasis gene.

Why it matters: A paper stops being a static artifact readers must reimplement and becomes a tool other agents call directly: the bottleneck shifts from replicating a method to trusting it.

By Jiacheng Miao, James Zou

Nature ↗

SynAgent has a multimodal LLM agent build its own understanding of a synthesis process

What happened: University of Tokyo's SynAgent reasons over XRD patterns and electron-microscopy images to build and revise its account of a synthesis process. In 18 autonomous experiments on LiCoO2 thin films it located a 650-690°C growth window.

Why it matters: Most self-driving labs output only the best sample; this one is judged on whether its stated reasons are checkable. Still one material, one method, no human baseline.

By Izumi Takahara, Teruyasu Mizoguchi

arXiv ↗

Google DeepMind launches the DeepMind Institute to study AGI's societal impact

What happened: Directed by Shane Legg, James Manyika and Demis Hassabis, the institute publishes interdisciplinary essays on AGI safety, governance and society, launching with pieces on reasoning transparency, economic policy, global access and human flourishing.

Why it matters: For a lab pushing both AGI and AI for Science, building outside disagreement into public discussion is itself a significant organisational signal.

DeepMind Institute ↗

NSF opens its $1.5B X-Labs program to AI for physical systems

What happened: NSF issued a third NSF X-Labs call, seeking AI-for-physical-systems proposals (sensors, robotics, embodied, cyber-physical), part of its $1.5B initiative from May. Two more fall topics were previewed.

Why it matters: NSF's earlier AI-for-science funding backed specific applications, like the health-data grants three days before it. X-Labs is a standing mechanism organized around AI's reach into the physical world itself.

NSF ↗

Moderna finds sampling protocol, not architecture, decided a GAN-vs-VAE antibody test

What happened: In a Turing-style wet-lab test, GAN-designed antibody sequences expressed and purified at 99% (92/93) versus 5% (2/40) for a VAE, a gap traced to unequal sampling, not architecture.

Why it matters: The headline would read "GAN beats VAE"; the paper's own control shows sampling protocol, not architecture, drove the gap, a caution for any two-model wet-lab comparison.

By Arkadij Kummer, Sandeep Kumar

bioRxiv ↗

PhAI Labs turns scientific codebases into agent environments, and catches its own benchmark leaking answers

What happened: ScienceIDE turns 27 scientific codebases into 64 executable environments and 2,812 tasks. On its 85-task held-out benchmark, 71 trials showed leaked upstream content via web tools before a tools-disabled rerun.

Why it matters: The self-caught leak, not the leaderboard, is the finding worth keeping: a benchmark's own audit trail is what makes its numbers checkable at all.

By Hejia Geng, Ling Yang

arXiv ↗

ShEPhERD-2 designs drug-like molecules from a 3D interaction profile alone, 6.4x faster than its predecessor

What happened: MIT's ShEPhERD-2 generates molecules conditioned on shape, electrostatics and pharmacophore profiles, accelerating sampling 6.4x over its predecessor while applying one model, without retraining, to fragment merging, dual-target design and selectivity engineering.

Why it matters: Treating a target's 3D interaction profile as the design spec, not just an evaluation metric, is the reframe; every result here is computed in silico, not synthesized or tested.

By Kento A. Abeywardane, Kenji Walker, Connor W. Coley

bioRxiv ↗

Durham spin-out Magnitude Biosciences raises £1.3M to scale ML-read screening in live worms

What happened: Northstar Ventures led, with regional funds and angels. Its VivoScan platform tests thousands of compounds on C. elegans, read by imaging and machine learning; a £217K Innovate UK grant is expected on top.

Why it matters: This buys experimental capacity rather than a model: a whole living animal to test what computation proposes. It is a contract research lab, so its value shows in clients' results.

Durham University ↗

Apex Intelligence raises nearly $50M across two rounds to build a self-improving AI researcher

What happened: Yongchao Chen, a 27-year-old Tsinghua AI professor who turned down DeepMind, raised $50M in angel and angel-plus rounds led by IDG Capital, LinkX Capital and XtalPi, to build models that run research on their own.

Why it matters: Its own account: 34 ML papers it wrote were submitted to ACL's open review, two scoring above 99% of past submissions by its own comparison (unpublished, self-graded, not accepted).

Apex Intelligence (PR Newswire) ↗

Intrepid Labs' Andromeda 2 agent designs oral paclitaxel formulations: 12 met all four targets, against 6 for its older optimiser and 0 for lab design-of-experiments

What happened: Each method got 96 formulations in the same robotic lab. Andromeda 2 had a 50% high-performance hit rate, against 17% for Andromeda 1 and 2% for design-of-experiments (DoE). Median dissolution AUC was 70.1, 12.0 and 3.5 mg·min/mL.

Why it matters: A real robot loop, and giving the agent the lab's earlier data raised mean AUC by 34%. But one drug, one campaign per method, a test-tube assay, and the company's own lab and older optimiser as the comparison.

By Michael M. Craig

arXiv 2609.19099 ↗

OpenAI, Anthropic and Google DeepMind confirm they have been coordinating on safety

What happened: OpenAI policy chief Chris Lehane told Bloomberg the leading labs have been coordinating on safety, and floated an industry standards body. FTC chair Andrew Ferguson called antitrust exemptions suspect; his personal view, not FTC policy.

Why it matters: Coordination between competitors had appeared only as voluntary commitments. Here one side confirms it and proposes a standards body, and another doubts one is needed. Neither exists yet.

CNBC ↗

A model trained on the electrocatalysis literature ranks seven rare-earth dopants, and the lab confirms its top four

What happened: MatSemNet learns materials semantics from published text, numbers and reaction pathways. Ranking rare-earth dopants for Co₃O₄, a family the authors chose, it put La first; La-doped Co₃O₄ reached 85.5% Faradaic efficiency in 1 M KOH.

Why it matters: The ranking reached the bench and its top four held, but people chose the family, La-doped Co₃O₄ was already published, and the pick has no baseline.

By Jiajia Liu, Yanglong Hou

npj Computational Materials ↗Read More · AI4S Brief →

PhAI Labs releases ScienceBuddy, a research agent that retrains its own harness and model

What happened: ScienceBuddy pairs 224 science tools with a two-loop scheme: an inner loop edits the agent harness, an outer loop retrains the model under it. Single-attempt accuracy on held-out tasks rises from 42.2% to 73.3%.

Why it matters: Most agent self-improvement retrains either the scaffolding or the model. Coupling both loops is what lets accuracy compound; whether it generalizes past four in-house task families is open.

By Shuhan Xue, Ling Yang

arXiv ↗

OpenAI Foundation commits $125M to open scientific datasets for AI-driven health research

What happened: The Foundation's second Life Sciences program funds open scientific datasets: OpenADMET for drug-candidate ADMET prediction, CTD Commons for regulatory files from failed drug programs, and UNC for multimodal personalized-cancer-vaccine data.

Why it matters: Frames the next bottleneck in AI biology as data no single lab has an incentive to collect, not model capability, and funds the public resource AlphaFold depended on.

OpenAI Foundation ↗

Google ships Gemini 3.8 Live and Extended Thinking, pairing real-time speech with multi-step reasoning

What happened: Two live-dialogue models reach the Gemini API, Workspace and Search: 3.8 Live for fast conversation, Extended Thinking for complex tasks. Extended Thinking leads Artificial Analysis' Speech-to-Speech Quality Index at 82.6.

Why it matters: A general capability release, not a scientific result: no lab application is claimed. Recorded because real-time speech plus explicit reasoning is what a voice-driven lab agent would need.

Google ↗

LG AI Research's chemistry-vision model goes into production inside Elsevier's Reaxys

What happened: Elsevier now runs LG AI Research's MolMole inside Reaxys's extraction pipeline, identifying molecules, reaction diagrams and OCSR from paper and patent images. Pipelines are checked against Reaxys's benchmarks before launch; reaction extraction is still expanding.

Why it matters: Molecules existing only as drawings are invisible to text search; chemists check by hand. MolMole makes them searchable, but error tolerance is low: one missed atom misidentifies the compound.

Evidence and limits: Production use is Elsevier's own account, and its release gives no error rate for the structures that go into Reaxys.

Elsevier ↗

Periodic Labs post-trains a 1T model on its own lab data to read diffraction results

What happened: Periodic Neon, post-trained from open-weight Kimi K2.6 on the company's own XRD data, scores 55.3% on its hardest internal set, FrontierXRD, against 2.7% for the base model. The final run used 1,300 H200s.

Why it matters: Expert ratings became the reward, so measurements re-enter training; the same Opus 5 scored 3.8x higher with the lab's tools. All scoring is in-house, and deployment is claimed without numbers.

Periodic Labs ↗Read More · AI4S Brief →

Dimenso raises $650K to record lab work through smart glasses

What happened: Draper B1 led, with Next Tier Ventures. Its glasses and computer vision log experiments as they happen, track protocol steps and flag deviations; the money goes to deployments in the US and Europe.

Why it matters: What happens at the bench is data lab records rarely capture, and models need it. The claim that it cuts paperwork by up to 65% is the company's own.

Dimenso press release ↗

Recursion licenses its RNA foundation model to Tempus for oncology diagnostics

What happened: Tempus gets a two-year, non-exclusive licence to Recursion's TxFM RNA model for oncology diagnostics and its own R&D, paying $12M in two instalments. It also gives Recursion de-identified pathology records with clinical data.

Why it matters: A foundation model earning a licensing fee for real diagnostic use, not a research collaboration. Recursion can still license TxFM elsewhere, so this tests demand, not exclusivity.

Recursion 8-K filing (SEC) ↗

XtalPi's LCMS2Yield predicts how strongly a reaction product absorbs UV light, so its yield can be measured without first purifying a reference sample

What happened: In JACS Au, Jiuchuang Yuan and 17 co-authors, all but one at XtalPi and including its co-founders Shuhao Wen and Jian Ma, pretrain a model on quantum-chemistry correction factors for 22,609 compounds and fine-tune it on measured ones for 1,845. With an internal standard and ordinary LC-UV readings, its yields for 178 reactions of four common types had a mean absolute error of 4.7% against yields from calibration curves. XtalPi released the weights, code and data under Apache-2.0 on 12 October.

Why it matters: Automated chemistry can run thousands of reactions, but measuring each yield properly means calibrating against a purified sample of the product, which is slow and often skipped. A predicted correction factor removes that step. It is checked against measurements: calibrated yields, 144 approved drugs of known concentration, and isolated yields for 60 reactions, which ran lower than its estimates as purification losses would predict. Every test is the authors' own, and it works only for products that absorb UV, under suitable analytical conditions.

By Jiuchuang Yuan

JACS Au ↗

Google, Google DeepMind and MIT FutureTech survey 637 scientists and analyse 15 million Gemini interactions: about 7 hours saved a week, and much of it spent checking the AI

What happened: The paper joins a sample of 15 million Gemini interactions, an inventory of over 2,600 specialised science models and a survey of 637 researchers in the US and UK, run by More in Common in July and August 2026. Almost 47% of those surveyed use some form of AI daily. They report saving 6.9 hours a week on average, mostly put back into more research. 89% of those who save time spend over a tenth of it checking AI outputs. Mihai Codreanu, Alex Imas and Juan Mateos-Garcia co-led it.

Why it matters: It counts specialised models as well as chatbots, and it says where the gain stops: AI speeds up analysis, coding and writing, but not lab experiments or checking. 41% report a growing backlog of untested hypotheses, and 49% say AI pushes them toward safer projects with established benchmarks, against 28% who say it lets them take on riskier questions. If that holds, AI could raise the number of papers without moving the frontier, and the money that would help is for lab capacity and verification tools.

Evidence and limits: The time saved and the shift toward safer work are respondents' own estimates, not measured output. The Gemini logs leave out paid API and enterprise use and agent tools such as Antigravity, and most authors work for Google or Google DeepMind. It is an arXiv preprint, not peer-reviewed.

By Mihai Codreanu, Alex Imas, Juan Mateos-Garcia

↳ Related commentary The study he co-led
arXiv 2609.28504 ↗

Mithrl raises a $20M Series A led by Obvious Ventures to sort which biology hypotheses survive the next experiment, rather than generate more of them

What happened: The San Francisco company, founded in 2023 by chief executive Vivek Adarsh and CTO Shara Balakrishnan, raised $20M led by Obvious Ventures, with Headline, AGI House and unnamed pharma executives. The money goes to Mithrl-1: a knowledge base built from peer-reviewed studies plus a layer routing work between the frontier models a customer already uses, to hiring for deployments inside large drug firms, and to more disease areas. It installs in the customer's own environment; the team is about 30, and customers include top-10 pharma companies and Elephas Biosciences.

Why it matters: Adarsh's pitch is that the industry can already produce more hypotheses than it can check, so the money is going to the triage step rather than to another generator. Obvious partner Rohan Ganesh, whose own page says he led the investment, invests in AI for life sciences. The platform keeps what was measured, what was perturbed and in which setting with each finding, on the argument that a gene's expression rising is not the same as its protein working harder, the distinction a mechanism has to get right.

Evidence and limits: Every number is Mithrl's own and unpublished: more than half a dozen customer-owned patent filings it says its platform contributed to, 45% fewer tokens than the same base models uncustomised, 16x more primary evidence per answer, and 0.96 against 0.6 for scientific correctness in expert-rated benchmarks it does not describe. The company's own post names no amount; the figure and the investors come from its chief executive through GEN.

GEN ↗

Google researchers release Stellar Colosseum, a many-agent harness for long-horizon math research

What happened: Built on Gemini 3.1 Pro and 3.7 Flash, the system explores routes before proving, splits proofs into dependent subproblems and returns verifier findings to the affected step. The preprint reports 71% on TCS-Bench.

Why it matters: The design target shifts from producing a plausible proof to managing a research process: when a route is mature, where a critique applies, how failed candidates still inform the argument.

By Honghao Lin, Vahab Mirrokni

arXiv ↗

Five drug companies federate private structures to sharpen a protein-ligand model

What happened: Five drug companies federated 20,167 private structures through Apheris to fine-tune OpenFold3, without the structures leaving each company. Held-out accuracy rose from 35.6% to 52.1%, ahead of the public model.

Why it matters: Pooling private structures without sharing them beat any one company's own data, a direct test of the vault-data claim, though scored on the consortium's own held-out set.

Apheris ↗

Peking University's OpenAI4S, an open-source research agent that keeps every step as rerunnable code, scores 7.83 against 5.7 to 6.4 for Claude Code on 36 science tasks

What happened: It runs each action as a code cell in persistent Python and R sessions, with a ledger of every step. Tasks span retrosynthesis, molecular dynamics, binder design and catalyst screening, scored by the authors' pipeline with an LLM judge. It is not OpenAI's product.

Why it matters: A bet that inspectable, resumable runs matter more for science agents than new tools. The models, prompts and tools differ between systems, the scorer rewards what OpenAI4S keeps, and the authors say rerunnability is weak for every system.

By Gongbo Zhang, Li Yuan

arXiv 2609.15096 ↗

Europe frames a shared 2040 strategy for materials AI

What happened: A roadmap spanning 26 organizations in 14 countries aims to connect materials research, development, scale-up and industrial deployment into one continuous system.

Why it matters: Its significance is not another model, but a public attempt to build the coordination and shared infrastructure that private science factories cannot easily supply alone.

Vision 2040 ↗Read More · AI4S Brief →

25 Fields Medalists warn of a “severe misalignment” between AI labs and mathematics

What happened: A joint statement signed by 25 Fields Medalists on Terence Tao’s blog says AI companies use famous problems as benchmarks and race to announce solutions faster than the community can verify them.

Why it matters: The mathematical community is contesting who defines progress: solving a problem is a proxy for understanding, and optimising the proxy can turn the tool against the goal.

Terence Tao ↗

Clay Institute says Navier–Stokes is “apparently settled” but will not rush verification

What happened: The Clay Mathematics Institute acknowledges the announced result but has not awarded the Millennium Prize; evaluation and the assignment of credit will be deliberately unhurried and follow its usual review process.

Why it matters: The first institutional response separates two claims the announcement merged: that a proof exists, and that it has been independently verified and credited.

↳ Related commentary OpenAI's two claims, told apart
Clay Mathematics Institute ↗

Frontier safety researchers leave AI labs for independent evaluator METR

What happened: Anthropic's Joe Benton and Google DeepMind's Josh Engels left internal safety teams for METR, which evaluates AI systems' autonomous capabilities and ability to accelerate AI R&D, arguing competitive pressure makes internal review insufficient.

Why it matters: METR's mandate, measuring autonomous capabilities and AI's ability to accelerate AI R&D, is the same question scientific agents raise: who verifies an autonomous system's output can be trusted.

Joe Benton ↗

MoleculeMind's QuantaMind, a learned force field for reactive molecular dynamics, appears in Science Advances: near-DFT accuracy on systems of about ten thousand atoms

What happened: Reactive dynamics ran for tens of nanoseconds on about 10,000 atoms. The company says a later test reached 100,000 atoms and 100 nanoseconds.

Why it matters: Reactive simulation of a whole enzyme is what protein design lacks, but every check here is against quantum-chemistry calculations, not a measured reaction rate.

By Song Xia, Deqiang Zhang, Xu Shang, Jinbo Xu

Science Advances ↗

Rhinovate raises a Pre-A round in the hundreds of millions of yuan for AI-run materials labs

What happened: Led by CDH Baifu, the Peking University Shenzhen spin-out's third round in a year funds a materials foundation model, an autonomous lab, and scale-up of high-performance carbon-based materials.

Why it matters: Its one number, an electrolyte study cut from 180 days to 30 with 75% fewer experiments, is the company's own, relayed by an investor; nobody outside has checked it.

XtalPi, an earlier investor ↗

Insilico doses the first patient in a planned 320-person Phase 3 trial of rentosertib, its AI-found drug for lung fibrosis

What happened: GENESIS-IPF-3 is a randomised, double-blind, placebo-controlled trial at 47 centres in China, giving rentosertib once a day for 52 weeks to people with idiopathic pulmonary fibrosis. Its primary endpoint is the yearly decline in lung capacity (FVC). Zuojun Xu of Peking Union Medical College Hospital leads it, with Nanshan Zhong and Chang Chen of Shanghai Pulmonary Hospital as co-leads. Insilico says both the drug's target, TNIK, and the molecule came from its AI.

Why it matters: The Phase 2a before it randomised 71 patients for 12 weeks; its primary endpoint was safety, and lung function, a secondary one, showed a dose-dependent trend. This trial is large and long enough to show whether that holds. Nothing has been measured yet: it is a start, and the lead investigator puts approval three to four years away at best.

↳ The Phase 2a it is meant to confirm An AI-discovered drug reaches randomized Phase 2a evidence
Insilico Medicine release ↗

Berkeley's GPN-Star reads human DNA beside the same stretch in other species, and beats far larger genome models at flagging disease variants, in Nature

What happened: Chengzhong Ye, Yun S. Song and colleagues trained three 200M-parameter genomic language models on whole-genome alignments of vertebrates, mammals and primates, with the species tree built into their attention; each trained for days on 8 A100 GPUs. On ClinVar, COSMIC, OMIM, HGMD and UK Biobank fine-mapped variants, the best of them beat every genome-wide model tested, Evo 2 40B among them, and beat AlphaGenome on non-coding variants. Added to DeepRVAT, they raised genes found across 34 traits from 383 to 402.

Why it matters: It is evidence against the idea that genome models mainly need more size: giving a small model the same stretch of DNA from other species, and the tree relating them, beat models trained on thousands of GPUs. Every result ranks models on variants already labelled; nothing it flagged was tested in a lab. It needs an alignment to run, the authors say it is less suited to insertions and deletions, and on ClinVar missense still trails AlphaMissense, which learns from population frequencies.

By Chengzhong Ye, Yun S. Song

↳ The sequence-to-function model it beats on non-coding variants AlphaGenome predicts regulatory effects across long DNA sequences
Nature ↗

Westlake University and DP Technology publish ProteinTalks in Nature, a virtual cell trained on drug-treated breast cancer proteomes whose drug picks were tested on three patients' organoids

What happened: Tiannan Guo's team at Westlake, with DP Technology researchers among the authors, treated 18 breast cancer cell lines with 63 approved drugs and measured their proteins four times over 48 hours: 16,311 proteome profiles. ProteinTalks learns how a proteome shifts after a drug and predicts response and synergy. It screened about 3,000 compounds for organoids from three triple-negative patients, and its picks were dose-tested there against cisplatin; knocking down AKR1C3, a protein it flagged, was tested with docetaxel in one cell line.

Why it matters: A virtual cell is only useful if its picks hold up in experiments nobody had run, and this one sent its picks to patient organoids, a step the Xaira, Arc and UC San Diego virtual cells on the record did not take. It is three patients, one cancer type and the authors' own labs, and the 501-patient survival split is retrospective. It is the first DP Technology research on the record.

By Rui Sun, Tiannan Guo

+1Nature ↗

Aureka opens up its agentic antibody-design harness, and 38 of 80 designs from it bound their target in the company's own lab

What happened: OpenDDE-Harness, released under Apache-2.0 with a technical report, puts a language-model agent around Aureka's own OpenDDE structure model: the agent proposes changes to an antibody's binding loops, the model folds and scores each one, and rejected and failed designs stay in the record for later cycles. In a separate campaign the company made 20 designs for each of four target-and-format pairs and measured them itself: 17 of 20 bound RAGE, 11 TfR1, 6 CXCR4 as a single-domain antibody and 4 as a full one.

Why it matters: What is released is the loop, not a model: the gates deciding which part of the target a design must touch, the candidate population and each cycle's written reflection are all in the open repository, so another group can run the same search policy on its own targets. The hit rates come with the molecular format each design was made in, which is what someone reusing it must plan around: against CXCR4, 6 of 20 single-domain designs bound and 4 of 20 full antibodies. Representative affinities are 540 pM for RAGE and 4.5 nM for a CXCR4 single-domain binder.

Evidence and limits: Aureka designed, made and measured everything itself; no outside lab checked a design. Binding here means a reproducible, concentration-dependent signal, and nothing was tested for what it does to the target. In the six-target computational comparison the harness beat its baselines on Aureka's own scoring, while OpenDDE both drove the search and judged the result. A technical report, not peer reviewed.

Aureka technical report ↗

AlphaGenome Atlas precomputes nine billion DNA variant effects

What happened: A roughly petabyte-scale public resource turns repeated genome-wide model inference into searchable infrastructure.

Why it matters: The durable contribution may be the public predictive layer itself: precomputation turns an expensive model into infrastructure others can query repeatedly.

Google DeepMind ↗Read More · AI4S Brief →

GPT-5.6 Sol runs experiments on a superconducting quantum chip

What happened: MIT's Beatriz Yankelevich connects GPT-5.6 Sol via Codex to lab software on an uncalibrated six-qubit chip: the agent picks parameters, runs measurements and chooses next steps. The group says it uses agents for routine measurements.

Why it matters: AI moves from writing experimental code into a live measurement loop, while noisy or ambiguous signals still reveal where expert judgment is needed.

OpenAI ↗Read More · AI4S Brief →

OpenAI reports an AI-generated Navier–Stokes solution amid a provenance dispute

What happened: OpenAI says an internal model produced an analytical proof for the Millennium Prize formulation, formalized in Lean by GPT-6 Astra, by constructing a finite-time singularity under smooth forcing.

Why it matters: If the result survives independent scrutiny, the target has moved from Olympiad problems to a Millennium Prize problem; provenance and verification are now part of the claim.

↳ Related commentary The OpenAI results he discusses
↳ Related commentary OpenAI's two claims, told apart
OpenAI ↗Read More · AI4S Brief →

A pre-registered physics judge finds none of 1,248 AI-generated superconductor candidates hold up

What happened: An independent researcher built a physics judge, criteria pre-registered before running. Calibrated on six known superconductors, it got all six right; on 1,248 MatterGen structures, it found none new, stable and pairing-capable.

Why it matters: MatterGen's 2025 landmark rested on one synthesised candidate, not new physics; checked here, it re-finds known materials. No published AI-superconductor list classifies gap symmetry.

By Reinaldo Inácio

arXiv preprint ↗

MIT's IRIS reads which signals a cell received during development from its gene activity, and a mouse-tissue test confirmed one prediction

What happened: Pulin Li's lab at MIT and the Whitehead Institute treated human embryonic stem cells with combinations of six signalling pathways at several stages and trained a neural network, IRIS, on their single-cell responses. Applied to mouse embryo atlases, it inferred which pathways had been active along lineages, including one absent from training. It predicted that WNT helps specify lung mesenchyme: in cultured mouse foreguts a WNT activator expanded the lung marker Tbx4 and an inhibitor eliminated it, and earlier, longer WNT raised lung-mesenchyme yield from human stem cells.

Why it matters: Finding out which signals made a cell what it is has needed genetic reporters, one pathway at a time, which is hard in human tissue. A model that reads signalling history from expression data alone turns existing single-cell atlases into maps of candidate signals, and narrows the combinations a lab must try when it grows a cell type from stem cells.

Evidence and limits: Both experiments test one prediction, about WNT, in the authors' own lab: 24-hour mouse foregut cultures and a revised stem-cell protocol in three cell lines. The other in-embryo inferences were compared with known developmental biology, not tested afresh, and accuracy is reported per pathway rather than as one figure.

By Nicholas T. Hutchins, Pulin Li

Nature Methods ↗

Insilico ran six proteomic aging clocks on blood from its rentosertib trial, and treated patients read biologically younger than placebo, most clearly at week four

What happened: Alex Zhavoronkov, Fedor Galkin and colleagues measured serum proteins in 42 patients from the published 12-week Phase 2a trial of rentosertib in lung fibrosis, and applied six published clocks, one of them Insilico's own. Of 54 comparisons against placebo (six clocks, three doses, three time points), 21 were significant at Q below 0.10, 11 of the 18 at week four. At 60 mg a day the four clocks trained on age read 2.71 to 3.46 years younger than placebo; the two trained on mortality did not move.

Why it matters: It is an attempt to read an aging endpoint out of a disease trial, which is the trial design Insilico is arguing for. But it is the sponsor's exploratory reanalysis of stored samples, with nine to eleven patients per arm at each time point and seven Insilico employees among the authors. The authors say proteomic clocks alone cannot separate slower aging from a treated disease, that they could only address this indirectly, and that doing it properly needs healthy volunteers. The readings did not move further between weeks four and twelve.

By Alex Zhavoronkov

Nature Biotechnology ↗

Living Models' BOTANIC-1 plant DNA models: the largest puts the known causal variant in its top 1% of candidates in half of 545 studies

What happened: Amélie Barozet, Jean Ogier du Terrail, Léonard Strouk and colleagues at Living Models trained four models (318M-3.2B parameters) on 320 plant genomes and released the three smaller ones and the corpus. On 22 tasks scored without fine-tuning, every size beat PlantCAD2-L, the best earlier plant model (0.770 against 0.752 for the largest); only the two largest lead significantly. Across 545 studies with a validated causal variant, the largest put it in the top 1% of its locus, about 60 SNPs, 49.9% of the time, against 44.6% for PlantCAD2-L.

Why it matters: Finding which of thousands of co-inherited variants causes a trait can take years of crosses; a model that shortens the list to 60 tells breeders what to test first. The gain is real but modest: the company built and scored the benchmark, part of it from its own unreleased tasks, the causal-variant test ranks variants already known to be causal, and no new variant was predicted and then tested in plants. The largest model, behind the headline numbers, is the one whose weights were not released.

By Amélie Barozet, Jean Ogier du Terrail

bioRxiv ↗

OpenAI says coding agents have reached its automated research-intern milestone

What happened: OpenAI reports that agents can complete well-defined tasks taking skilled researchers several days, while its research organization used 3.1 agent-workdays for every human workday by mid-August.

Why it matters: The evidence is observed use inside a live frontier-research organization rather than another benchmark, although the productivity data remain self-reported.

OpenAI ↗

Superluminal Medicines, which designs GPCR drugs with machine learning and cryo-EM, raises a $60M Series B led by BVF Partners to take its first drug into the clinic

What happened: Deep Track Capital and Perceptive Advisors joined, alongside existing investors RA Capital Management, Insight Partners, NVIDIA, Catalio, Eli Lilly, Cooley and Gaingels, as reported by Pulse 2.0. The Boston company, co-founded by chief executive Cony D'Cruz and Ajay Yekkirala, says the money takes an MC4R agonist for rare genetic and hypothalamic obesity into a Phase 1 trial expected by the end of 2026. BVF's Harsha Paladugu and RA Capital's Nandita Shangari sit on the board. Valuation not disclosed.

Why it matters: Investors are paying for an AI drug-discovery company's first drug to reach a clinical trial, the step that turns a platform into a drug company. The round says nothing yet about whether the molecule works: no trial has started, and the sources do not say how much the platform did to find it.

+2Pulse 2.0 ↗

Claude completes a computer-checked formalization of Fermat’s Last Theorem

What happened: Anthropic reports that Claude worked largely autonomously for 11 days to produce an end-to-end Lean formalization, writing 13 million lines and proving 29,500 intermediate theorems used in the final proof.

Why it matters: This is not new mathematics; the advance is making a vast accepted proof machine-checkable and potentially lowering the cost of verifying future AI-generated mathematics.

Anthropic ↗

DeepMind study: an agent research swarm spreads an evaluator exploit, and other agents blow the whistle

What happened: Of 100 Gemini 3.1 Pro agents on 71 formal conjectures, one found a way past the evaluator without real proofs; it spread via a shared library to 14% of agents; 24% audited and raised alerts.

Why it matters: Automated research is only as reliable as its evaluator. The failure here is not a wrong proof but a gamed referee, and the proposed remedy is institutional.

By Davide Paglieri, Alexander Sasha Vezhnevets

arXiv ↗Read More · AI4S Brief →

Inceptive's fine-tuned models design CAR-T mRNAs that cleared more B cells in mice than Capstan's optimised sequence in three of five tries

What happened: Inceptive trained its sequence models on CAR-T data from its own lab, then had them write anti-CD19 CAR mRNAs: same protein, different UTRs, codons and folding. Five went into humanised mice at 0.1 mg/kg in Amplitude Therapeutics' CD8-targeted lipid nanoparticle, four mice each, read at 24 hours. Of four predicted to beat Capstan's sequence, three did; the one predicted to match it did. The best, M4, cleared nearly all B cells in blood, bone marrow and spleen, with three times Capstan's CAR expression.

Why it matters: In in vivo CAR-T most effort goes into the delivery particle; this tests whether redesigning the mRNA alone, with the protein unchanged, makes a stronger drug in an animal. The models also ranked the designs before the mice were dosed, and the ranking largely held, which is what would let a company test a handful of designs instead of screening thousands.

Evidence and limits: Company blog, not peer-reviewed: four mice a group, one 24-hour time point, a mouse model carrying human immune cells, and no durability, safety or repeat-dose data. Inceptive ran it and chose the benchmark; the sequences are not public.

By Alexander Hawkins-Hooker, Jakob Uszkoreit

Inceptive blog ↗

DataHow, an ETH Zurich spin-out, raises a bridge round to link its bioprocess models to live plant data

What happened: The bridge extends its Series A; the amount is undisclosed. Momenta led, with Rockwell Automation, HINA Bioventures and Zürcher Kantonalbank. DataHowLab mixes machine learning with process knowledge to plan bioprocess experiments.

Why it matters: It sits after discovery, in making a drug at scale. The money goes to real-time connection to lab and plant systems, model-driven process control, and downstream processing.

DataHow press release ↗

Tsinghua AIR spin-out AIPher raises an angel round of about 100M yuan for AI-led drug discovery

What happened: Xianghe Capital led, with Zhipu's Xinglian Capital. Founded in July from Yanyan Lan's and Ya-Qin Zhang's groups, it builds on DrugCLIP virtual screening; its lead ADHD program is at pre-candidate stage.

Why it matters: Reported by 36Kr with the company on record and confirmed by its adviser. The 60-80% hit rates on some targets are the company's own figures.

36Kr ↗

AI-designed protein assemblies build RNA transporters that beat lipid nanoparticles by orders of magnitude

What happened: Helmholtz Munich and TUM built RNA transfer vehicles from natural protein domains plus over 100 AI-designed assemblies. One, STV-C8, was safe in mice and edited a dystrophin gene segment in patient cells and a pig.

Why it matters: The paper's comparison, not an independent one, is what beats lipid nanoparticles by several orders of magnitude. The disease-relevant edit stands on one pig and patient cells, not a trial.

By Maren Kirstin Schuhmacher, Wolfgang Wurst

Nature ↗

BigHat doses the first patient with BHB810, its first AI-designed drug in humans

What happened: BHB810 is an antibody-drug conjugate against CDH17 for gastric and other GI cancers. The Phase 1 dose-escalation trial tests safety, drug levels and early anti-tumour activity.

Why it matters: This is the first test of BigHat's design platform in people, not a result: the only efficacy data so far are the company's preclinical models, about 30 of them.

BigHat Biosciences ↗

Lila says its platform designed an in vivo CAR-T mRNA that beat a benchmark in monkeys; its conference abstract and its blog give different figures

What happened: In an ASGCT 2026 abstract (12 authors, all at Lila), one 0.5 mg/kg dose in monkeys gave near-complete B-cell depletion through day 7, and in mice 0.25 mg/kg beat the benchmark at 1.0 mg/kg with no significant toxicity. Lila's 2026-08-28 blog post says the therapy outperformed the leading benchmark, took three scientists under six months and cost about a tenth of a conventional programme. All of it is preclinical and company-reported.

Why it matters: The two Lila sources do not agree. Time: three months in the abstract, under six in the blog. Day 14: B cells back to about 50% of baseline in the abstract, depletion maintained in the blog. Benchmark: back to baseline in the abstract, past it in the blog. Neither names the benchmark or gives animal numbers or statistics, so the claim to beat the leading therapy cannot yet be checked.

By Yue Yang, Craig H. Kerr

↳ Related commentary Discovery, or optimization?
Lila Sciences blog ↗

Anthropic expands discounted Claude access for scientists

What happened: A discounted usage program expands beyond biology to fields including mathematics.

Why it matters: Access to frontier models is becoming research infrastructure, raising the same allocation questions as compute, data and instruments.

Anthropic ↗

Anthropic previews a common interface for agents and lab hardware

What happened: The Model Hardware Standard proposes a shared layer for instrument control, state, measurements and errors. In a Genentech proof of concept, Claude drove a liquid handler, robot arm and plate reader through it and tuned pipetting flow rates against an expert's transfers.

Why it matters: A shared interface could turn one-off instrument integrations into reusable infrastructure, a prerequisite for scaling autonomous labs.

Anthropic ↗Read More · AI4S Brief →

Co-Scientist crosses from hypotheses into physical experiments

What happened: An execution-grounded extension connects Gemini agents to real experiments, including CVD protocols for two-dimensional materials and wet-lab validation of biological predictions.

Why it matters: The important shift is from proposing hypotheses in silico to adapting research plans to laboratory constraints, execution and empirical feedback.

arXiv ↗

Tetsuwan Scientific runs 9,143 robot dispenses chosen with Claude and learns a pipetting model that predicts precision about 12% better than the maker's datasheet

What happened: Using Anthropic's Model Hardware Standard on an Opentrons Flex and a Byonoy plate reader, Claude proposed batches of a dye tracer, 1,508 measured conditions in all. On held-out sessions the learned model beat the datasheet on 33 of 45, about 12% better (sign test p about 0.003), and about 17% on the most replicated data. About a third of the variation turned out to be evaporation at the plate edges.

Why it matters: A lab robot that knows its own error can plan a protocol a scientist can trust, which is what a cloud lab sells. The gain is modest, measured on one robot with one tracer dye in the company's own lab and reported in a blog post, and the company says most of the effects it expected to find did not show up.

By Cristian Ponce

Tetsuwan Scientific ↗

Google moves its AI Responsibility team out of DeepMind

What happened: The roughly 90-person unit is moving into Google Global Affairs at the start of September, covering frontier-model risks, CBRN evaluations, user behavior and the psychological effects of chatbots.

Why it matters: Not a layoff but a governance experiment: does moving frontier-risk research closer to policy strengthen coordination, or weaken its independence? Google says mission, staffing, compute and DeepMind access remain.

WSJ ↗

BixBench3: on 20 computational biology tasks run from raw data, 13 frontier models score 0.00 to 0.48

What happened: Edison Scientific's benchmark gives an agent a study's research question, its analysis plan spelled out, and the raw data, then grades the 138 outputs it produces, such as differential expression tables, against those the original study reported. Scores fall from 0.36 to 0.10 when raw data passes 100 GB, and from 0.36 to 0.24 at three or more steps. A task averages 6.8 hours and $43; the top scorers were not the biggest spenders.

Why it matters: It measures whether an agent can carry out a whole study's analysis from raw data, and says where agents break: large data and long chains of steps. The agent runs a prescribed pipeline and never chooses the analyses; scores rank models against published results, on 20 studies, in the company's own benchmark.

By Zane Koch, Jon M. Laurent

arXiv 2608.25286 ↗

Transfyr launches with a $25M seed led by General Catalyst to record how lab work is actually done; ARPA-H's founding director is a co-founder

What happened: General Catalyst led; Lux Capital, Breakout Ventures, Factory, Neo, SV Angel, MVP Ventures, Underscore VC and Lyda Hill joined. CEO Anna Marie Wagner led AI and corporate development at Ginkgo Bioworks; Renee Wegrzyn, its Chief Innovation Officer, was ARPA-H's founding director. The Cambridge, Massachusetts company puts sensors and multimodal models into labs to capture what scientists do, the conditions and the instrument readings, and runs its own wet lab for training data. Hemant Taneja, General Catalyst's CEO, spoke for the round; Kevin Weil and David Baker are named advisers.

Why it matters: The bet is that what AI and lab robots lack is not more papers but the unwritten part of an experiment: the steps that work only in one person's hands. The release says Transfyr already runs evaluations for the largest frontier AI labs, without naming them, and shows no model or measured gain. The people are the news: the first director of ARPA-H, the US government's health moonshot agency, now builds lab-data infrastructure, with OpenAI's former head of science as an adviser.

↳ Funding record Transfyr · Seed · $25M →
Transfyr ↗

MIT trains a crystal-and-text model on AI-written descriptions of 126,000 crystals; trained on sentences from papers instead, its property search does no better than chance

What happened: Yang Jeong Park, Elsa Olivetti, Ju Li and colleagues pair 126,000 Materials Project crystals with descriptions a GPT model wrote from each one's computed properties, and train a crystal encoder and a text encoder to match them. Asked for a property in words, it retrieves crystals whose computed values follow the request; trained instead on sentences from 4 million papers, it retrieves at about random. In multiple-choice tests it names composition 95.4% of the time but crystal system only 34.0%, level with a small text-only model.

Why it matters: Searching materials by a sentence needs text tied to structure, and the literature does not supply it: the paper text here covered about 400 compounds against 126,000, and ties loosely to any one structure. Writing the text from computed properties addresses both, which is the paper's case for synthetic data over more papers. In a search for a solid lithium electrolyte, the top 30 included two compounds other work had already flagged, Li6PClO5 and Li4SiO4.

Evidence and limits: Everything is computed: the descriptions are written from Materials Project's calculated properties, and retrieval is scored against the same values. Ionic conductivity is not in the descriptions, so the electrolyte search used band gap alone, and four of its top 30 have a computed band gap of zero. The paper-text baseline drew on 4 million papers that copyright keeps from being shared, so a rerun needs its own publisher licences. No crystal was made or measured.

By Yang Jeong Park, Elsa Olivetti, Ju Li

Nature Communications ↗

Benchmark finds agents complete only a minority of full science workflows

What happened: Across 97 tasks in six domains, strong partial progress often fails to translate into completed research workflows.

Why it matters: The result warns against rewarding partial fluency: useful research agents must carry a workflow across the finish line.

arXiv ↗

Claude and two mathematicians push the elliptic curve rank record to 31

What happened: Levent Alpöge (Anthropic) and cryptographer Ava Howell used an unreleased internal Claude model to construct an elliptic curve of rank at least 30, then 31 three days later. The lower bounds are unconditional.

Why it matters: The last jump, rank 28 to 29, took 18 years; this one took three days. But disclosure is thin: no paper, no account of the search.

Elliptic Curve Rank Leaderboard ↗

OpenBind-0 releases a fully open co-folding model and finds four more years of PDB data did not help everywhere

What happened: OB0, trained on PDB data to June 2025 and released under Apache 2.0, rivals AlphaFold3 and Protenix on standard benchmarks, but top-25 success falls from 92.2% on EV-A71 to single digits on flexible RdRp targets.

Why it matters: Clear gains came only where new structures filled unfamiliar regions: data value depends on which gap it fills, not on its size. This is OpenBind's own evaluation.

↳ Related commentary OpenBind on the timeline
OpenBind ↗Read More · AI4S Brief →

The Baker lab's SAPP and DMX turn protein-design testing into a 48-hour batch

What happened: SAPP expresses, purifies and characterizes hundreds of designs in one 48-hour cycle with about six hours of bench work; DMX recovers individual constructs from cheap pooled DNA, cutting DNA cost an estimated 5-8x.

Why it matters: The bottleneck in protein design has moved from generating candidates to building and measuring them. It remains an IPD-internal screen, not a closed loop.

Nature Communications ↗Read More · AI4S Brief →

Bioptimus gets 1,750 colorectal cancer patient profiles from Cancer Research Horizons to train and test M-Optimus

What happened: The S:CORT dataset joins Bioptimus's STELA data programme as its first UK cohort, with imaging, genomic, transcriptomic and clinical data per patient. No financial terms were given.

Why it matters: A model company's edge here is patient data it can train on and also test against. Bioptimus says S:CORT will serve as an evaluation benchmark, but no results were released.

Bioptimus ↗

An individualized cancer vaccine whose neoantigens an algorithm picks meets its Phase 3 endpoints

What happened: At a prespecified interim of INTerpath-001 (1,137 melanoma patients), intismeran plus KEYTRUDA beat KEYTRUDA alone on recurrence-free and distant-metastasis-free survival. Only topline results are public.

Why it matters: The algorithm earns credit only as part of the whole system the trial tested; no hazard ratio is public yet, and overall survival is immature.

Merck ↗Read More · AI4S Brief →

511 AI-designed or AI-ranked antibodies went into a blinded challenge and were measured under one set of protocols: at picking the strongest binders, all but one method did worse than choosing at random

What happened: AIntibody, modelled on the CASP structure contest, took submissions from 29 organisations on three tasks: improving affinity from phase-1 sequencing output, ranking the strongest binders inside three sequence clusters, and designing new loops for sequences outside the library. Outside labs made and measured every antibody: surface plasmon resonance for all, the slower KinExA for the strongest, and a five-assay panel for whether one can be made into a drug. A few submissions came in under 100 pM; one cluster's own control antibody was already at 36.6 pM.

Why it matters: The gains show up where there is data to learn from. On improving antibodies inside a library the submissions did well: the winner, Aureka, reached 95 pM, about 2,000 times the parent antibody, though statistically tied with the best antibody the lab's own experiments produced, and a consensus sequence built without machine learning came third. On deciding which clone to test, all but one method was beaten by picking at random. Of the designs made for sequences outside the library, 51 of 168 did not bind at all.

Evidence and limits: One challenge, one target, one set of assays. The scoring let high affinity offset a biophysical failure: the strongest out-of-library design, at 2.9 pM, failed the chromatography test. Blinding rested on the organisers' integrity rather than on any check in the data, which the authors say the next round will fix. Entering meant disclosing the method, which the authors think kept some groups away.

By M. Frank Erasmus, Andrew R. M. Bradbury

Nature Biotechnology ↗Read More · AI4S Brief →

Anthropic reports Claude-designed protein binders working in the lab

What happened: External wet-lab partners validate binders for 14 of 15 targets in a model-assisted design workflow.

Why it matters: External wet-lab results make this more than a model demo and test whether a general system can compete inside a specialized design workflow.

Anthropic ↗

ASI-Bench tests agents without step-by-step research guidance

What happened: Average performance drops sharply when agents must choose their own research methods rather than follow prescribed steps.

Why it matters: It isolates a central weakness of AI scientists: executing a method is easier than choosing the right method and knowing when to change course.

arXiv ↗

OpenAI's LifeSciBench: 750 expert-written life-science tasks, with OpenAI's own GPT-Rosalind the best model at a 36.1% pass rate

What happened: 173 PhD experts wrote the tasks, each with a rubric, graded by GPT-5.5. Of five models, GPT-Rosalind scored 0.576 and passed 36.1%; Grok 4.3 passed 13.0%. No model passed 171 tasks (22.8%).

Why it matters: A hard, unsaturated test of life-science judgment. But OpenAI wrote it, built the top model and used GPT-5.5 as grader; answers are single-turn, and public release of tasks may be limited.

By Amelia Liu, Jeremy Li

bioRxiv ↗

Enveda reports ENV-308, a pill built to mimic an exercise hormone, was well tolerated in 88 healthy volunteers

What happened: ENV-308, found with Enveda's PRISM model, mimics Lac-Phe, a molecule the body releases during intense exercise. In the Phase 1 trial, the company reports no serious adverse events, discontinuations or dose interruptions across the dose range, and lower circulating leptin, most in people with the highest baseline levels; it gives no leptin figures. Enveda, whose founder and chief executive is Viswa Colluru, plans Phase 2 in people stopping GLP-1 drugs.

Why it matters: Another drug Enveda found with its AI model reaches people, and the trial shows only that it is safe enough to keep testing. Leptin is an exploratory marker with no numbers given, the weight claims come from animals, and the readout is a company release, not a paper.

Enveda release ↗

GenBio AI, co-founded by a Nobel laureate, releases a preview of AIDO Cell, a model that simulates a human cell from DNA to whole-cell behaviour

What happened: The company says AIDO Cell is multi-scale and stateful: a researcher can perturb the cell at one level, and later perturbations build on earlier ones. The preview covers two cell lines, K562 and HepG2, and in one preliminary study modelled how imatinib acts in leukemia cells. Co-founder David Baker says the cell is not solved; co-founder Eric Xing calls this a preview, with early access and more accurate versions to follow.

Why it matters: A virtual cell is the model drug discovery keeps asking for, and this one comes from a company founded around a Nobel laureate. What is public is a description and one qualitative example: no accuracy figures, no comparison with other models and no prospective experiment. For now it shows that a system exists, not that its predictions hold.

Evidence and limits: Everything comes from GenBio's own release as SynBioBeta carried it; genbio.ai returned 403 and no paper or technical report was found. The imatinib example is described, not shown with data.

SynBioBeta ↗

LiteFold's LiteMol-1 puts small molecules, peptides, macrocycles and PROTACs in one generator built for agents

What happened: One masked-diffusion model generates and edits several molecular classes in sequence space; with tree search, peptide chemical validity rises from 0.77 to 0.98. Full PROTAC generation stays around 25% valid.

Why it matters: For agents, cheap and editable calls may matter as much as single-call accuracy; the evidence is computational only, and the training recipe is not fully disclosed.

LiteFold ↗Read More · AI4S Brief →

Lanyon AI, a Princeton lab building formally verified scientific AI, emerges from stealth with a $10.6M first round led by Dimension

What happened: Lanyon AI says it closed a $10.6M first round led by Dimension, with Industrious Ventures taking part; its own blog adds the angel Siqi Chen. Co-founders Jonathan Gorard, Ammar Hakim and Jimmy Juno come from Princeton and its plasma physics lab. Its agent has a model propose a formal specification, and symbolic code then writes the solver and its proof together. Aerospace, propulsion and nuclear are the first targets.

Why it matters: Dimension's partner says next-token prediction ends at "mostly right", which does not clear the bar for flight controls or nuclear systems; that is the bet. Venture money is backing a team that moved from academic plasma physics and formal methods to a company, aimed at simulation where an error has a cost. The founders are people to follow.

Evidence and limits: The round is the company's own account: the release gives no valuation, and the blog dates the close to July. Claims that Lanyon is correct by construction and far cheaper than frontier models rest on its own benchmark notes, which no outside group has run; the company says matching a user's intent remains an open problem.

Lanyon AI via PR Newswire ↗

Inherent trains a 27B agent that directs frontier coding agents

What happened: Faraday calls a frontier coding agent as a tool; by the team's own judge it outscores Claude Opus 4.8 and GPT-5.5 on 73% of training-split tasks and 60% of held-out ones.

Why it matters: It separates scientific judgment from execution: the small model decides what to try, the large one writes the code.

arXiv ↗Read More · AI4S Brief →

AI antibody-discovery company Aureka Biotechnologies closes a $100M Series B in tranches, taking its total to nearly $200M

What happened: Granite Asia alone funded the first tranche; an unnamed industry investor led a later one, with HighLight Capital joining and existing backers Qiming Venture Partners, Matrix Partners China and NRL Capital following on. Founder and chief executive Weian Zhao leads the company, which says the money trains its next generation of biological foundation models, after AuraIDE, and expands Lab-in-the-Loop, the screening platform whose results go back into training. Yinghui Kuang spoke for Granite Asia. Valuation not disclosed.

Why it matters: Investors are paying for the claim that an antibody model needs its own lab feeding it data to keep improving. The company says it earned tens of millions of dollars in revenue over two years, with pharma partners, and that its open model, OpenDDE, ranks well in outside tests; it names neither the partners nor any drug.

Aureka's own release ↗

Claude improves a longstanding bound related to the Riemann hypothesis

What happened: An unreleased Claude research model raises the known lower bound for the fraction of Riemann-zeta zeros on the critical line from 41.6% to 67.2%, with a formally checkable proof.

Why it matters: Unlike Olympiad performance, this is claimed novel mathematics produced while exploring an unsolved problem, without claiming to solve the Riemann hypothesis itself.

Anthropic ↗

Discovered Materials, a YC startup using AI agents to look for chip-cooling materials, raises a $9M seed led by Lightspeed India Partners

What happened: Hemant Mohapatra, the Lightspeed partner who led the round, and co-founder Advaith Sridhar spoke to TechCrunch. Y Combinator, Peak XV Partners and angels Paul Graham, Gokul Rajaram and Thariq Shihipar also invested. Sridhar and Akash Ramdas, a Stanford materials-science PhD, use Anthropic models in their own harness to propose candidates and physics models they trained to screen them. Valuation not disclosed.

Why it matters: Another bet that agents can search for materials faster than a PhD student's 20 guesses a day, aimed at heat in AI chips. The company says it has found materials that match ones chipmakers use but gives no details, and its own lead investor says filtering and making the materials, not finding candidates, is the bottleneck.

TechCrunch ↗

Purdue's torch test: Radical AI's alloy RAI-939 gained 0.25% mass where the Apollo-era alloy C103 lost 32%

What happened: Radical AI says Purdue torch-tested RAI-939 against C103 above 2,500 C and calls it 125x better at surviving the environment. It came from 300-plus materials made in 16 weeks.

Why it matters: An outside lab tested a named alloy. One minute of torch on one sample is not a flight spec, and no Purdue report was read.

Radical AI blog ↗

WeatherNext Cyclones gains roughly a day of forecast lead time

What happened: A Nature paper reports state-of-the-art forecasts for cyclone track, intensity and wind structure, with at least a day of average lead-time advantage and ensembles of up to 1,000 members.

Why it matters: This is unusually strong AI4S evidence because forecasts are compared with mature operational systems and then continuously checked against the physical world.

↳ Related commentary The cyclone model he opens with
Nature ↗

AI verifiers start auditing the scientific record, flagging errors across whole paper corpora

What happened: Nature reports cases, a company audit and three preprints: an AI prediction led to a 75-year-old chemistry database value being confirmed wrong, and 83.2% of one checker's flags were confirmed by the papers' authors.

Why it matters: Verification is becoming AI4S infrastructure too, but these are leads, not verdicts: on one 2025 benchmark of errata-level errors, the best model found at most 21.1%, at 6.1% precision.

Nature ↗Read More · AI4S Brief →

Jeff Dean leaves Google to found Discovery Loop

What happened: Dean, Sanjay Ghemawat, Quoc Le and Oriol Vinyals form a public-benefit company to automate scientific and engineering loops.

Why it matters: The personnel move concentrates rare systems, model and science expertise in an independent company built around closing discovery loops.

Discovery Loop ↗

Demis Hassabis moves from DeepMind CEO to Alphabet Chief Scientist

What happened: Koray Kavukcuoglu takes operational leadership of Google DeepMind while Hassabis shifts toward long-range scientific direction.

Why it matters: The change matters because the lab behind many AI4S landmarks is separating long-range scientific direction from operating control.

Google ↗

BASF's catalyst arm licenses Orbital Industries' CurieOS to look for automotive emissions catalysts

What happened: BASF Environmental Catalyst and Metal Solutions will run CurieOS, the agent platform Orbital Industries built around its Orb simulation model, on catalyst discovery and development for vehicle emissions. Orbital Industries says it had used the same platform to find the PFAS-free coolant developed for its data-centre brand. Jonathan Godwin, its chief executive, James Gin-Pollock, its chief technology officer, and Saeed Alerasool, BASF's senior vice president and chief technology officer for the unit, each spoke in the release. No financial terms, duration or targets were disclosed.

Why it matters: Until now the record showed Orbital Industries using its platform only on its own products. A catalyst maker licensing it is a different kind of evidence from a benchmark: it says an industrial buyer thinks it worth trying. Every performance claim in the release (100,000 atoms on one GPU, ten times faster than the nearest model) cites the Orb-v3 preprint already on this record, so nothing new is shown about the model, and no catalyst has come out of the deal.

Orbital Industries release ↗

AI Proteins publishes the lab workflow that turns DNA into purified protein in three days, and made 87 of 96 test proteins with it

What happened: Edson N. Cárcamo Noriega, Chris Bahl and colleagues at the company describe a protease built to cut a protein free while it is still stuck to the purification beads, by adding a long, floppy linker so the enzyme can reach it. Around it they built a five-step workflow for liquid-handling robots. Of 95 varied natural proteins plus a GFP control, 87 of the 96 gave more than 100 micrograms per 2 mL of culture at over 90% purity. Plasmids, the protein set, scripts and data are public.

Why it matters: AI can now propose far more protein designs than labs can make and measure, so the bottleneck has moved to production. A company whose business is designing miniproteins has published the part of its pipeline that makes them, with the plasmids at Addgene and the robot scripts on GitHub, so other labs can make and test designs at the same pace and add to shared training data.

Evidence and limits: The test set is natural, single-domain, disulfide-free proteins already known to express in E. coli, and none was designed; some needed an added two-residue spacer before the protease cut them. All the work is the company's own. The code and data are licensed for non-commercial use.

By Edson N. Cárcamo Noriega, Christopher D. Bahl

Protein Science ↗

MinerU.Chem adds a chemistry layer to PDF parsing, turning papers into traceable molecule and reaction records

What happened: Shanghai AI Lab chains five modules after general document parsing (relevance filter, structure detection, identifiers, structure recognition, reaction diagrams) and deploys it publicly; each record links back to its page.

Why it matters: Finished PDF parsing had left the chemistry as pixels. The strong numbers are per module; document-level accuracy is unreported.

arXiv ↗Read More · AI4S Brief →

Hangzhou's Shuye Tech raises a Pre-A of tens of millions of yuan for smart pipettes and modular lab robots it pitches as agents

What happened: Taipu Life Science Investment led and Wanyuandian Capital joined; there is no exact amount and no valuation. Founded in 2018 by Su Li, who did doctoral research in robotics at the Technical University of Munich, the company sells a voice-controlled electronic pipette, modular robots for PCR, ELISA and sequencing prep, and an AI module that plugs into older instruments. The money goes to core R&D, marketing, hiring and working capital. It says it works with about a hundred universities and institutes.

Why it matters: This is the cheap end of lab automation: one instrument at a time, sized for small labs, not a full robotic line. Calling the devices an agent cluster is the company's framing for instruments that talk to each other; the announcement shows sales and design awards, not an experiment run end to end without a person. It shows China's lab-automation money reaching instrument makers, not a self-driving lab.

36Kr ↗

A Multiply Labs robot cluster matches skilled operators on cell-therapy steps, with a lower cell count at low concentration

What happened: Multiply Labs, Stanford's Laboratory for Cell and Gene Therapy Manufacturing, which has a collaboration agreement with the company, and co-authors from the Università degli Studi di Milano and instrument makers ran a modular robotic cluster against manual work on the same instruments. Buffer exchange on a CTS Rotea gave 83-95% recovery by hand against 81-133% by robot, and viability above 93% against 83-97%, with no significant difference over three to four runs a side; T-cell isolation on a CytoSinct 1000 was comparable, with more spread.

Why it matters: Autologous cell therapies are still made by hand, one patient at a time, and that cost is why they reach few people. What decides whether a robot can take over a validated process is whether the same instrument gives the same numbers, and here it mostly did. Mostly: at low concentration the robot counted significantly fewer cells than the operators (5.63 against 5.91 x 10^5 per mL), the CytoSinct needed its wash and elution lengthened, bag-to-bag transfer was robot-only, and the cells' phenotype and function were out of scope. The authors call it an R&D prototype.

By Alice Melocchi, Federico Parietti

Int J Pharm X ↗

Lanyon AI's own benchmark has five frontier models write PDE solvers with Lean proofs, and finds they often prove something other than the code they wrote

What happened: Lanyon had Kimi K3, Claude Opus 4.8, Claude Fable 5, GPT-5.5 and GPT-5.6 Sol write finite-volume solvers in C with Lean proofs, three trials each, for advection, Maxwell, Burgers and 2D Euler. In the linear tests every detailed-prompt run that finished was scored faithful; under a terse prompt some proved a degenerate case or used native_decide. On 2D Euler, five of fifteen detailed runs gave a wrong solver. Lanyon's own solvers took 7 to 23 seconds and 600 to 2,940 output tokens.

Why it matters: The test targets a failure this record tracks: a proof that type-checks but is about different code. Under the terse prompt, both Claude models proved a first-order, CFL=1 special case for the second-order solver they had written, and some GPT and Kimi runs used native_decide to skip kernel checking. It shows what comparing a proof against the code can catch, and how much the prompt decides.

Evidence and limits: Lanyon wrote the prompts, rubric and scoring, and picked the models; its own solvers are single reference runs, counted in its own DSL tokens. No outside group has run the benchmark. The Lean files are public with no sorry or native_decide, but prove statements about real numbers while the C uses double. Their hyperbolicity and wave-stability theorems are tautologies: the wave-speed estimate is written identically to the eigenvalue, and nothing ties either to the Jacobian.

By Jimmy Juno

Lanyon AI research notes ↗

FrontierMath adds 50 genuinely unsolved research problems

What happened: Epoch AI expands the benchmark beyond private-answer questions to problems with no known solution at release.

Why it matters: It changes what evaluation asks: not whether a model can uncover a hidden answer, but whether it can advance a problem with no answer yet.

Epoch AI ↗

Relation expands its GSK deal to up to $110M for cell perturbation data and its MORGAN foundation model

What happened: GSK pays up to $110M, upfront and milestones, for Relation to run automated cell-perturbation experiments and train foundation models on them. Its model MORGAN has no benchmark, size or paper yet.

Why it matters: A pharma partner pays for data made to train a model, not for a target list. The upfront share is not stated and MORGAN has shown no results.

Relation Therapeutics ↗

Raygun edits protein length with a language-model code, and some shortened proteins still work in cells

What happened: Duke's Raygun shrinks or grows proteins using language-model embeddings. In cells, 6 of 8 shortened fluorescent proteins fluoresced, 2 of 11 TurboID variants worked, and two EGF variants bound EGFR better than wild type.

Why it matters: Function survived big edits only in some cases: fluorescence was dim and the half-size TurboID was inactive. Not independently replicated.

Nature ↗

Schrödinger opens early access to Bunsen, an AI agent that plans, runs and reads its physics-based molecular modelling, and Bristol Myers Squibb agrees to roll it out across its research

What happened: Bunsen takes a scientific question in plain language, picks the computational method, sets up the multi-step workflow, launches the calculations on Schrödinger's own validated tools and interprets the output. Selected customers got early access on 27 July, with NVIDIA and Google Cloud supplying compute; full release is planned by the end of 2026. On 5 August Bristol Myers Squibb, a long-time user of the platform, signed to deploy it at large scale and to co-develop features with Schrödinger's chemical-space search and RetroSynth synthesis planner.

Why it matters: Schrödinger contrasts Bunsen with general-purpose AI that only retrieves and summarises information: it is built to drive one vendor's established physics-based methods, which drug hunters already use to rank molecules before making them. Schrödinger aims it at drug hunters who are not computational chemists as well as at computational chemists, and Ramy Farid, its president and CEO, says licences priced on how much is computed will capture the extra use. A drugmaker deploying it across its research organisation is one test of whether that happens.

Evidence and limits: Neither release gives a measurement: no task success rate, no comparison with chemists working without it, no customer result. The BMS agreement has no stated terms or length.

+1Schrödinger release ↗

Enveda reports an oral eczema pill cut skin scores 85% by day 42 in nine patients

What happened: In an open-label Phase 1b of ENV-294, nine adults took it daily for 28 days. Mean EASI score fell 68% by day 28, 85% by day 42. One adverse event, a headache.

Why it matters: Nine patients, no placebo, company-reported: not proof it works. The release does not say how AI shaped this molecule.

Enveda press release ↗

DOE selects the first 278 Genesis Mission projects; Brookhaven and Stony Brook lead ten of them

What happened: DOE picked 278 projects for award negotiations; selection is not a commitment to fund. Brookhaven leads 7 and Stony Brook 3, putting AI into reasoning, instruments, design and data infrastructure.

Why it matters: What DOE chose to test is AI as parts of workflows, not one universal AI scientist, and every capability named is still a Phase I plan.

US Department of Energy ↗Read More · AI4S Brief →

Berkeley Lab and Oak Ridge lead 22 of DOE's first Genesis Mission projects

What happened: Berkeley Lab leads 13 and Oak Ridge 9: Earth and energy forecasting, materials loops, digital twins, and shared software and networks, all selected for award negotiation.

Why it matters: The portfolio follows the data and facilities the two labs already hold; the selection materials, checked 2026-09-27, report no project result that can be checked.

Berkeley Lab ↗Read More · AI4S Brief →

PNNL leads 16 of DOE's first Genesis Mission projects and states numeric targets for several

What happened: PNNL leads 16 Phase I projects and joins 26 more, from subsurface simulation to instruments and manufacturing; targets such as a 100-fold speedup are written down in advance.

Why it matters: Targets stated in advance make these awards testable: a missed target will be as informative as a met one. Selection is not yet a funding commitment.

PNNL ↗Read More · AI4S Brief →

NSF puts $20M into PoLARIS, a robot-run soft-materials lab at UChicago and Argonne that outside researchers will run from their own desks

What happened: PoLARIS is to link more than 20 autonomous stations across five labs at the University of Chicago and Argonne, among them Argonne's Advanced Photon Source and Polybot, and take experiment requests through cloud interfaces. The materials are liquids, polymers, gels, colloids, foams and granular matter. UChicago expects 100 to 300 experiments a day once running, end-to-end autonomous experiments on its own first questions within 18 months, and outside users by the end of the grant's second year. Ian Foster leads it with Stuart Rowan, Jie Xu and Yuxin Chen.

Why it matters: Most autonomous labs serve the group that built them. This one is funded to take work from universities, companies, government labs and institutions without such equipment, so a researcher with a good idea and no robots can have the experiment run. If it works, access to automated experiment becomes something a scientist applies for rather than builds.

Evidence and limits: Nothing has run for an outside user yet: the throughput, the 18-month and two-year dates and the access model are all UChicago's own plan, in its announcement. The NSF award record reads $20M intended over four years, of which $5M is obligated for 2026, as a cooperative agreement under a new Programmable Cloud Labs program, so it is a commitment renewed yearly, not money in hand.

UChicago PME ↗

Google commits $40M in AI tokens and cloud credits to the Genesis Mission, and says Gemini cut a national lab's microscope calibration from 90 to 13 minutes

What happened: Pushmeet Kohli and Karthik Narain announced, at the DOE Genesis Mission Summit, $40 million in tokens and cloud credits: Genesis awardees get AlphaEvolve, AlphaFold 3, AlphaGenome, WeatherNext and AlphaEarth Foundations, and DOE lab staff get Gemini for Government for a year. The post quotes Steven Spurgeon, a materials data scientist at the National Laboratory of the Rockies: Gemini in the lab's instruments cut microscope calibration from over 90 minutes to about 13, and the steps to focus an image from as many as 50 to two.

Why it matters: It is the clearest case yet of Google's models running inside a national lab's materials instruments rather than proposing ideas from outside. The credits are a subsidy, but the microscope example shows where DeepMind's tools are reaching the physical lab: through other institutions' equipment, not its own materials lab, which has not opened.

Evidence and limits: The calibration figures are a quote in Google's own post; no paper or lab report behind them was found. The post names no materials result.

Google Cloud ↗

CuspAI raises a $450M Series B at a $2.6B valuation and pools 45-plus partners' labs, compute and expertise onto its platform as the AI Materials Foundry

What happened: Kleiner Perkins and NEA co-led, with Bezos Expeditions, Lux Capital, AMD Ventures and Britain's Sovereign AI Venture Fund new and Temasek and Prosus following on; Bloomberg reported the $2.6B valuation, up from $520M a year earlier. Co-founder and chief executive Chad Edwards told Bloomberg most of the money goes on labs in Cambridge, Singapore and the Bay Area, and that semiconductors take 80% of this year's research, including designing out ruthenium and iridium. The Foundry pools compute, labs and expertise with 45-plus organisations, NVIDIA and Meta among them.

Why it matters: It is the largest closed round in materials and chemistry on this record, and it buys wet labs and partners' instruments rather than models: the Foundry's 45 members are where a predicted material would get made and measured. Against that, the same report says CuspAI has carried no project to a material ready for commercial development, and says its competitors have not either, so the price is on the search, not on a product. The pivot to semiconductors and to designing out two constrained metals says where the paying problem is.

Quartz via Yahoo Finance ↗

Anthropic names five winners of its week-long Claude life-sciences hackathon, run with the Gladstone Institutes

What happened: Anthropic, the Gladstone Institutes and Cerebral Valley ran it online on July 7-13 for $100K in credits; about 300 projects are posted. Research track: NCypher (Faith Ogundimu) first, ranking 10,869 DNA variants from a nearly always fatal childhood brain cancer for lab follow-up; Extremolith (Jaymin Patel) second, redesigning enzymes for heat, acid or salt. Build track: Lazarus (Dean Sherry) first, reviving abandoned research code; Provinans (Shereen Lee) second, merging cancer records. Gladstone's prize: Trialign (Jules Park, Neil Wang), matching cancer patients to trials.

Why it matters: The winners show Claude reaching into several real research steps, and the gap between finishing a task and a trustworthy scientific result. NCypher narrowed 10,869 DNA variants to lab candidates, but its team calls the effect modest and the result hypothesis-generating. Lazarus got 17 dead research repositories running, yet of 20 sampled, 5 reproduced their paper's numbers: running is not reproducing. Extremolith's enzyme-design demo returns a precomputed result until its builder finds affordable GPUs. None is peer-reviewed or lab-tested, and Anthropic and Gladstone judged. AI is helping with screening, analysis and execution here, not making discoveries.

Anthropic's Claude account on X ↗

Sanofi nominates a new target in its Aqemia collaboration, triggering a milestone payment of undisclosed size

What happened: The 2023 deal is worth up to $140M in upfront and milestone payments. Aqemia designs small molecules on its physics-based generative AI platform; Sanofi runs the wet lab, development and sales. The release gives no amount for this payment and does not name the target.

Why it matters: A partner adding a target shows the deal is being used, not that the molecules work. Maximilien Levesque, Aqemia's CEO, is the only person quoted; Sanofi said nothing in the release.

Aqemia press release ↗

Latent Labs opens Latent-Y, an agent that designs antibodies from a written prompt, to any approved researcher

What happened: Latent-Y takes a goal in words, or a paper, and runs the whole campaign itself: reading the literature, picking the epitope, generating candidates with Latent-X2 and choosing which sequences go to the bench. Its technical report takes nine targets to the bench and gets lab-confirmed nanobody binders against six, down to single-digit nanomolar; most of those campaigns ran end to end, and on the cross-species one an expert had to step in and correct the agent. Approved researchers get 250 designs a day free, with credits for more.

Why it matters: This is the step from a model a protein designer drives to one that makes the design decisions, and the test is who can use it. The launch release names three outside groups that got lab-validated designs, including a UC Davis lab that blocked a human ion channel with four of five designed nanobodies, and says some had no computational design experience. Those outside results are Latent Labs' own account; the 6-of-9 figure is its own wet lab.

By Sebastian M. Schmon, Simon A. A. Kohl

Latent Labs ↗

Chai Discovery raises $400M at a $3.8B valuation, led by Index Ventures

What happened: Index Ventures led the Series C alongside Kleiner Perkins, Sequoia Capital and Dimension; Bain Capital Ventures, Battery Ventures and Sapphire Ventures are among the new investors, and OpenAI, Thrive Capital and Menlo Ventures followed on. Chai says the money goes to compute, data and research for its models and to reaching more scientists. Joshua Meier, co-founder and chief executive, spoke for Chai; Nina Achadjian, Ilya Fushman, Pat Grady and Zavain Dar for the four firms.

Why it matters: Seven months after a $1.3B valuation, investors pay nearly three times as much for a company selling model access to Eli Lilly, Pfizer and Novartis rather than developing drugs of its own. The price is a bet on software licensed to pharma, not evidence that its antibodies work.

Business Wire via Yahoo Finance ↗

A PolQ inhibitor scaffold from Iktos's generative model reaches low-nanomolar potency in the test tube, and its most potent compound is inactive in cells

What happened: Iktos and the contract research firm Sygnature Discovery designed inhibitors of PolQ, a DNA-repair enzyme pursued as a cancer target, using Iktos's generative software Makya alongside docking. Of 88 compounds made and tested, six inhibited it below 5 micromolar. An oxime compound whose group a chemist repositioned reached pIC50 7.3 and matched the reference inhibitor ART-558 in cells; a second generative round around it reached 8.3 in the biochemical assay, against 7.6 for ART-558.

Why it matters: This is a generative design carried through synthesis and assays rather than a docking score, and the paper credits model and chemists together without separating their shares. The cell assay is where it stops: the 8.3 compound showed no potency against BRCA-deficient cells, which the authors put down to poor permeability, so the biochemical gain did not carry into cells. Every number comes from the two companies whose staff wrote the paper, and selectivity against related enzymes and any animal test are still to come.

By Ageo Miccoli

ACS Omega ↗

Alchemab, which looks for antibodies in people who resist disease, adds a GBP 25M Series A extension from the British Business Bank, the bank's largest life sciences investment

What happened: The GBP 25M ($34M) takes Alchemab's Series A to GBP 109M and pays for its clinical pipeline and for growing its antibody database from 500 million to over a billion sequences. Its Resiliome platform uses AI to find naturally occurring antibodies in people unusually resistant to hard-to-treat diseases. Jane Osbourn, co-founder and chief executive, and Kate Bingham, board chair, spoke for the company; Charlotte Lawrence and Carmine Circelli for the bank, whose commercial arm British Patient Capital made the investment.

Why it matters: The release itself offers a deal, not data, as its validation: Eli Lilly licensed Alchemab's first antibody, ATLX-1282 for ALS, in May 2025 for up to $415M before any human had received it, and its Phase 1 began that September. Lilly has also signed a discovery collaboration and invested, so its bet reaches the platform too, but none of the releases reports clinical results or shows the platform picks better antibodies than other methods. The money is the UK government's: the British Business Bank is the state's development bank.

Alchemab release ↗

Chalmers pairs LLM agents with an automated yeast lab and reports two new interactions, each tested in the lab

What happened: Agents propose hypotheses and an automated culture and metabolomics lab tests them. In yeast it found glutamate slows spermine-treated cells, and aminoadipate partly rescues formic-acid stress.

Why it matters: A full loop from hypothesis to wet-lab check, but two findings in one yeast, by the builders, read from the abstract.

J. R. Soc. Interface ↗

alqem raises EUR 8M pre-seed, co-led by UVC Partners and Union Square Ventures, to search for magnets that use no rare earths

What happened: The Munich company was founded this year by chief executive Hanh Nguyen, chief technology officer Tiago Cerqueira and chief scientific officer Milan Allan, who chairs experimental physics at LMU Munich and heads its in-house synthesis and characterisation. Its engine sits on Alexandria, the open database of predicted crystal structures Cerqueira co-built, plus in-house property datasets and its own lab. Amanda Birkenholz, a principal at UVC Partners, spoke for the lead. The company says it has a pipeline of rare-earth-free magnet candidates whose predicted properties were checked against experimental data.

Why it matters: High-performance permanent magnets are about 90% made in China and export controls have made that a policy problem, so a European pre-seed aimed at replacing the rare earths in them is capital following a supply chain rather than a benchmark. Alexandria is a real asset, which the company calls the largest and most widely used database of its kind, but what it says about its own candidates is one sentence, with no compound, no measurement and no paper. The line that the last breakthrough in permanent magnets came more than 40 years ago is its release's too.

alqem release (MCQST) ↗

Aureka releases OpenDDE, an open co-folding model that predicts an acceptable interface for 66.4% of antibody-antigen complexes on a new test set it curated, against 51.0% for the next best model

What happened: Aureka Biotechnologies released OpenDDE under Apache-2.0 with training code, weights and benchmarks: a model that predicts how proteins, nucleic acids and small molecules fit together, built on the open Protenix and OpenFold3 models. On three antibody-antigen test sets it placed an acceptable interface for 51.0%, 70.0% and 66.4% of complexes, the best of the models compared. The third set, 164 structures newer than the training data, was curated by Aureka; there Protenix-v1 reached 50.0% and Boltz-1 25.0%.

Why it matters: Antibody-antigen interfaces are flexible, hard for co-folding models, and where antibody companies need them most, and the strongest reported system, Isomorphic Labs' IsoDDE, is closed. An open model close to it lets any lab run and retrain the structure step itself. It is also the model under Aureka's agentic design harness, so that harness's lab results rest on it.

Evidence and limits: Every score compares computed structures with deposited ones, in runs by Aureka; no outside group has repeated them. The paper says both that it reaches IsoDDE's reported accuracy and that it only narrows the gap, and IsoDDE's recipe is not public. The authors say it is not tuned for small-molecule docking or affinity. A preprint, not peer reviewed.

arXiv 2607.03787 ↗

TranscriptFormer, a single-cell model trained on 112M cells from 12 species, is published in Science

What happened: The paper reports state-of-the-art cell-type classification, even for species over 685 million years from the training set, and zero-shot disease-state identification in human cells.

Why it matters: One model comparing cells across the tree of life bets that expression data alone carries shared structure. The abstract reports tests on existing annotated data only, with no new experiment.

Science ↗

Medra launches an AI layer that plans and revises experiments for its robot lab, with a DARPA-funded project to turn written protocols into machine runs

What happened: A scientist sets a goal in chat; the AI Experimentalist drafts the plan, sends it to Medra's robots, reads the results and revises the protocol. Partners use it on site or through ML001, the 38,000 sq ft San Francisco lab Medra opened in April, where closed-beta work covers antibodies, protein engineering, gene editing and cell biology. It runs NVIDIA's Nemotron models and BioNeMo agent tools, among others.

Why it matters: Medra's bet is that testing, not ideas, is now the slow step, so the reasoning should sit next to the robots. Its one worked example is its own: an antibody binding assay cut from three days to about 14 hours by dropping a two-day cloning step and tuning the rest, with no data shown. DARPA's money says the government wants protocols turned into robot runs; it is not a result.

Medra ↗

Bayer signs a drug-discovery collaboration with Iambic to use its Enchant and NeuralPLexer models on hard-to-drug targets

What happened: Bayer will discover small-molecule medicines using Iambic's platform, including its Enchant and NeuralPLexer models, aimed at targets that are hard to drug and at hit molecules that differ from known ones. Iambic gets an upfront payment plus milestones and royalties; no amounts, targets or number of programmes are given. Juergen Eckhardt, Bayer's head of business development and licensing, and Iambic chief executive Tom Miller spoke for the companies.

Why it matters: Iambic now has three pharma platform deals on the record this year, with Takeda in February, Bayer in June and AbbVie in September, and its IPO priced on 14 October. Bayer is paying for access to the models, a different arrangement from handing molecules over for milestones on a single asset.

Evidence and limits: Only the terms in the company's own release: no amount, no target, no number of programmes, and no result from the platform for Bayer yet.

Iambic release ↗

Flex-Cat closes a catalyst-optimization loop and scales the result tenfold

What happened: The autonomous laboratory runs 680 experiments across three catalyst-optimization campaigns and transfers selected results from 2 mL discovery runs to a 20 mL reactor.

Why it matters: The important step is not autonomous search alone, but translation from miniaturized discovery experiments toward process-relevant conditions.

Nature Communications ↗

John Jumper leaves Google DeepMind to join Anthropic

What happened: John Jumper, who led AlphaFold and shared the 2024 Chemistry Nobel, said on X he is leaving Google DeepMind after nearly nine years to join Anthropic, after a break. Bloomberg, which broke the news, says he was a key member of Google's AI coding team.

Why it matters: The person who led AlphaFold is moving to a lab that has published its own science results this year, including protein binders Claude designed and a lab tested. His work at Anthropic is not yet public.

John Jumper on X ↗

Insilico doses the first person in a Phase 1 trial of ISM8969, an NLRP3 inhibitor it designed with AI and co-owns with Hygtia Therapeutics

What happened: The single-centre, randomised, placebo-controlled trial in Australia will test single and multiple rising oral doses in about 80 healthy volunteers and 20 obese adults at risk of heart disease, for safety, tolerability and how the drug is absorbed and acts. ISM8969 is meant to reach the brain to treat chronic neuroinflammation, including Parkinson's disease. Under the deal, Hygtia, incubated by a Shenzhen fund and Fosun Pharma, holds half the global rights, and Insilico can receive up to $66M.

Why it matters: It adds a brain-penetrant inflammation drug to the Insilico molecules in human trials, under a deal in which a partner holds half the global rights. Insilico counts it as that deal's first clinical milestone.

Evidence and limits: Dosing a first volunteer shows the trial has started, not that the drug is safe or works; the 'AI-driven' design is the company's own description.

HKEX announcement ↗

Noetik's TARIO-2 picked out likelier responders to Agenus's BOT+BAL immunotherapy from routine biopsy slides, looking back at 49 colorectal cancer patients in a trial

What happened: In a white paper with Agenus, Noetik's Ryan Dalton, Ron Alfa and colleagues use TARIO-2, trained on paired tumour images and spatial gene-expression data, to infer gene activity from standard H&E slides taken before treatment in the Phase 1b trial C-800-01. Among 49 patients with microsatellite-stable colorectal cancer and no active liver metastases, the 30% the model ranked highest had a 64% response rate against 9% for the rest (AUROC 0.81, permutation p=0.04); the survival hazard ratio was 0.18 in 47. It beat two open H&E-only pathology models.

Why it matters: It tests whether a model that learned spatial biology can read a drug response off the cheapest slide in cancer care. The answer here is a hindsight analysis of a small, fully enrolled trial: 49 patients in the main group, a model fitted to those patients' own outcomes under cross-validation, written by Noetik with the drug's own developer and not peer-reviewed. Ovarian cancer and sarcoma looked similar but did not reach significance. Only a prospective trial that selects patients this way would show it works.

By Ryan Dalton, Lacey Padrón

Noetik and Agenus white paper ↗

Radical Numerics, started by the team behind the Evo and Evo 2 DNA models, launches with a $50M seed round led by Emergence Capital to build one model that reads DNA, RNA and proteins together

What happened: Obvious Ventures, Triatomic Capital, Factory and First Spark Ventures joined, and Patrick Collison backed it at pre-seed, per Fortune. Eric Nguyen is CEO, with Michael Poli, Stefano Massaroli and Armin Thomas. The money is for larger models, more researchers and compute; a data center of NVIDIA Blackwell chips is under construction. It has two early partnerships, a cancer-detection company and a US national lab for pathogen detection, and says its revenue mix is still taking shape: API licences, tuned models for pharma, milestone payments.

Why it matters: The money goes to a lab that treats biology as one language across DNA, RNA and proteins, where most funded biology-AI companies work on a single modality. It also comes from the people who built an open DNA model that others used to generate a working virus genome, so the company is pairing design with defence from the start.

Evidence and limits: No valuation is disclosed. The company's own post gives the amount and no investor list; the investors and the use of funds come from Fortune's exclusive and JustAINews, which quotes Emergence's Gordon Ritter. Both partners are unnamed, and the revenue model is, in the CEO's words, not worked out.

Radical Numerics ↗

Radical Numerics previews Omnii, a genome language model that scores noncoding variants above CADD and Evo 2 on the company's own benchmark runs

What happened: Omnii takes DNA plus conservation tracks, with a 2 million-base context, and is post-trained so it needs no probe on frozen embeddings. On ClinVar noncoding single-letter variants it scores AUROC 0.975 against 0.909 for CADD and 0.911 for Evo 2 40B; on copy-number variants 0.773 against 0.664 for CADD-SV; on TraitGym complex traits AUPRC 0.410 against 0.297 for Borzoi. The post also shows a design method and attention maps; Omnii is in early access.

Why it matters: Base genome models have trailed hand-built scores like CADD on variant interpretation, which is the applied task geneticists care about. This is the first report from Evo's authors that a post-trained genome model passes those scores on noncoding variants, where most disease-linked variation sits.

Evidence and limits: Every number is the company's own: it re-scored the baselines on a protocol borrowed from the EVEE paper, reproduced EVEE's probe itself, and compares only against open-source sequence-to-function models. No outside group has run it, and the Omnii preview posts on biodefence and cancer vaccines were not read.

By Eric Nguyen, Michael Poli

Radical Numerics ↗

Shenzhen's Jindu Shengke raises nearly 100M yuan in a Series A for an omics model tied to agents that run lab instruments

What happened: Gaotejia Investment led; no other investor and no valuation are named. Founder and CEO Yongcheng Jin describes two parts: GeneLLM, a multi-omics model pretrained on individuals' raw RNA, protein and metabolite data, which the company puts at 1.5 billion parameters and 3.5 trillion bases; and BioFord Agent, agents that design experiments and schedule sequencers, liquid handlers, PCR and mass-spec instruments from different vendors. The money goes to its physics-AI architecture, the agent platform and overseas markets.

Why it matters: It is one more Chinese company selling the closed loop (the model proposes, instruments test, results come back) to biology labs. Every number is the company's own, and it shows no benchmark for GeneLLM, no paper and no experiment the loop has run. What the round does show is a fund that invests only in healthcare paying for lab agents.

36Kr ↗

Terray's TerraSynth designs molecules with a route to make them, and in Terray's own projects chemists made half its compounds in 4 weeks instead of 8

What happened: A 2-billion-parameter model built on Terray's COATI proposes each molecule with a route drawn from 260 reliable reactions. On 1,000 ChEMBL molecules it rebuilt 53.8%, against 32.1% for ReaSyn, which takes about 1,000 times longer; PrexSyn, as fast, rebuilt 24.0%. In 5 Terray projects, half its designs were made within 4 weeks, against 8 weeks in 8 earlier projects whose designs had no route; in 4 later projects, with a chemist picking 15 of every 22, 90% were made in 4 weeks.

Why it matters: Making a molecule is the slowest step in drug design, and AI designs often stall there. This is the company's own post, not a paper: the project comparison is before and after a date cutoff, not randomised, over 244 compounds, and the check that designs stay potent used Terray's own model, not an assay.

By Miles Wang-Henderson, Narbe Mardirossian

Terray Therapeutics ↗

XtalPi signs an unnamed international drugmaker to an oral small-molecule programme for a GPCR target, with a potential total value over $400M

What happened: In a voluntary HKEX filing, XtalPi says a pilot phase on a metabolic GPCR target led to the full deal: the partner pays an upfront sum and funds XtalPi's early R&D, and preclinical, clinical and commercial milestones plus royalties bring the potential total above $400M. The upfront is not stated. The target has no public high-resolution structure bound to a small molecule, so XtalPi says it simulated the receptor's shapes, screened hundreds of millions of compounds against them, and scored binding with free-energy calculations.

Why it matters: It asks whether simulation can stand in for a small-molecule-bound structure nobody has published, and a drugmaker paid to continue after seeing the pilot. But the partner, the target and the upfront are all undisclosed, the pilot's hit rates are called a breakthrough without a number, and most of the $400M depends on milestones. It shows what one buyer will pay for, not that the method works.

XtalPi announcement to HKEX ↗

Anthropic tests Claude against ChemDraw and MestReNova on NMR prediction for 20 new compounds

What happened: David Kamber, a chemist at Anthropic, took 20 compounds from ChemRxiv preprints posted after the models' training cutoff. Predicting their 1H shifts, Opus 4.7 averaged 0.079 ppm off, the most accurate of the tools; on 13C it tied MestReNova, 1.37 against 1.48 ppm. Working backwards from formula and 1D spectra, it recovered all eight simpler structures on every run, and the seven harder ones, given the starting material, on two or three runs of three.

Why it matters: Reading spectra is one of the slowest routine steps in synthesis: ChemDraw and MestReNova only work forward, from a structure to its spectrum, and elucidation software needs 2D spectra. A general model with no chemistry fine-tuning that matches that software, and can also propose a structure from the 1D data a chemist would paste into a chat, means a chemist can start to hand NMR checking off and then audit it.

Evidence and limits: A small in-house test: 20 compounds in four scaffold families, 15 elucidation problems, three solvents, and no 2D NMR or stereochemistry. The harder structures needed the starting material as a hint, and the authors call the results indicative rather than precise.

By David Kamber

Anthropic ↗

Generalist AI raises $400M led by Radical Ventures for robot foundation models; a Form D later shows $198M more

What happened: Pete Florence and Andy Zeng, formerly of Google DeepMind, and Andrew Barry of Boston Dynamics founded the company in 2024. Radical Ventures leads the $400M; 8VC, Union Square Ventures, Hanabi Capital and Norwest are new, Fei-Fei Li and Naval Ravikant invest as angels, and NVIDIA, Spark Capital and Bezos Expeditions follow on. Total raised passes $500M. A Form D filed on 24 August reports $198.2M more sold from 7 August.

Why it matters: Robots that handle objects reliably are what a self-driving lab needs, and Generalist's bet is that robot skill scales with real physical interaction data, the claim behind its GEN-0 and GEN-1 models. The money goes to that data engine and to training compute, so its next models test whether the scaling holds.

Evidence and limits: The company states no stage or valuation; the $2B is SiliconANGLE's and TechCrunch's figure. The 8VC lead and $3B valuation for the August money come from TechCrunch's unnamed sources, not the filing. GEN-1's reliability figures are the company's own.

Generalist AI ↗

Alnylam pays Inceptive $30M upfront to design siRNA drugs with its generative models, in a deal worth up to $2B

What happened: Alnylam, the company that pioneered RNAi drugs, signed a collaboration with Inceptive, co-founded by Transformer co-author Jakob Uszkoreit. The $30M upfront is cash plus a purchase of Inceptive equity; the rest of the up to $2B depends on preclinical, regulatory and sales milestones. Inceptive's models are to model target mRNAs, explore siRNA sequences and chemical modifications, and predict which candidates will do best in preclinical models, for Alnylam to develop.

Why it matters: Alnylam has six approved drugs and says it holds more than 20 years of its own siRNA data, so the deal asks whether a general sequence model adds anything where that much in-house data already exists. Part of the upfront is an equity stake, and the release calls the joint exploratory results exceptional without giving a number: this shows what Alnylam will pay for, not that the models work.

Alnylam and Inceptive press release ↗

Lila Sciences is in talks to raise about $2 billion at an $8.5 billion pre-money valuation, Bloomberg reports

What happened: People familiar with the matter told Bloomberg the Series B is anchored by CalPERS, California's public pension fund, and NVIDIA's NVentures. Lila and CalPERS declined to comment. As of 2026-10-07 neither Lila nor any investor has announced a close.

Why it matters: If it closes, the price would be several times what investors paid eight months earlier, set before Lila had published a result. A public pension fund anchoring the round would put retirement savings behind the bet that a lab can be a model's data source. It is still talks, from unnamed sources.

Bloomberg, reported ↗

Genesis says its Pearl system, given only an unbound protein structure, posed 78% of 802 ligands within its best 25 tries in OpenBind's EV-A71 benchmark, above every co-folding model OpenBind tested

What happened: The Pearl system adds sampling at inference time and physics- and AI-based ranking to Pearl, Genesis's co-folding model. Given the protease sequence, each ligand's 2D structure and an apo structure released after Pearl's training cutoff, it had a pose meeting OpenBind's joint test (within 2 Å, physically valid, LDDT-PLI at least 0.8) among its top 25 for 78% of ligands. Within 1 Å it reached 60%, against 27% for Protenix, the best co-folding model OpenBind tested, and 52% for GNINA docking into the bound structure.

Why it matters: On this target a loop next to the pocket moves about 3.9 Å when a drug binds, and docking into the unbound structure succeeds under 5% of the time. A model that predicts that movement from sequence can be used on targets with no drug-bound crystal structure, which is where co-folding is meant to pay off.

Evidence and limits: This is Genesis's own run on one protease, posted on its blog with no code or model released; the baselines are OpenBind's published numbers. Best-of-25 assumes the right pose can be picked out; with one pose, its joint success within 2 Å was 55%.

Genesis Molecular AI blog ↗

Orbital Industries releases OrbMol-v2, an open molecular simulation model it scores ahead of the B3LYP and PBE0 functionals on a public chemistry benchmark

What happened: OrbMol-v2 adds learned atomic charges and an explicit long-range electric term to Orbital's earlier molecular model. On 5,152 reactions from the GSCDB benchmark its error was 1.62 times that of the best hybrid DFT functionals, which the company says beats the widely used B3LYP and PBE0 and is 21% lower than the next machine-learned model, at about a millionth of DFT's cost. Weights and code are open under Apache 2.0. The company says LLM agents wrote the first version of the new module.

Why it matters: Hybrid functionals such as B3LYP are the default way chemists compute molecular energies, and they are slow at the scale of proteins or electrolytes. A machine-learned model that matches them on a broad outside benchmark, with few large misses (one reaction off by more than 100 kcal/mol, against 59 for the earlier version), could become the first calculation a chemist runs. Without long-range charges, earlier models got even a separating ion pair qualitatively wrong.

Evidence and limits: Orbital ran the comparison itself, in a blog post with no paper. It dropped 28 of GSCDB's 139 subsets and every reaction involving a lone atom, which such models cannot compute, and scored the DFT functionals on the same subset. Its error is still larger than the best hybrid functionals', and it learned from calculations at one functional's level, ωB97M-V.

Orbital Industries ↗

FieldQuantum raises several hundred million yuan in two angel rounds to put quantum computing behind an AI4S platform

What happened: InnoAngel Fund led the angel and angel+ rounds, with Guoqi Investment, Beigong Investment, BV Baidu Ventures and the Shuimu Tsinghua Alumni Fund joining and Lighthouse Capital as adviser. Founder Dingshun Lyu, one of Tsinghua University's first quantum-computing doctoral students and then seven years at Huawei and ByteDance's AI4S Lab, founded the Beijing company in January 2026. The money goes to core research, the product platform, industry deployments and hiring. No amount beyond "several hundred million yuan" was given.

Why it matters: The bet is that AI models for materials and chemistry are limited by the accuracy of the data they train on, and that quantum computing is where more accurate data comes from. It is a bet on a supply chain, not a result: the company is months old and has shown no calculation anyone outside it has checked.

36Kr ↗

Inherent, founded by three former DeepMind researchers, comes out of stealth with a $50M seed co-led by Index and Radical

What happened: Tantum Collins, Edward Hughes and Louis Kirsch, all from Google DeepMind, founded the London public benefit corporation with Kaloyan Aleksiev of Reka AI and Microsoft. Index Ventures and Radical Ventures lead; NVentures, Ex/Ante, Metaplanet, Macroscopic Ventures and Mythos Ventures join. It is building Faraday, in which researchers work with self-improving AI agents. Danny Rimer of Index says the gap is AI that picks which questions are worth asking.

Why it matters: It is the money behind a result already on the record: three months later Inherent published Faraday, a 27B model trained to direct coding agents in replicating papers. The round shows investors backing a small lab whose bet is on how scientists and agents divide the work, not on the largest model.

Evidence and limits: The round says nothing about whether Faraday works; that is the later paper's question. Index confirms its lead; the other participants are from TNW's report.

↳ Funding record Inherent · Seed · $50M →
Index Ventures ↗

Unreasonable Labs' ProjectionBench asks models to predict a recent paper's results from its research question alone, then with more detail; GPT-5.4 scores highest

What happened: Andrew J. Lew, Yuan Cao and Markus J. Buehler took 45 open-access Springer Nature papers from the previous six months on bioactive, mechanical and nanomaterials. Models get the topic and research question, then the null hypothesis, then the procedure, and predict the results at each stage, offline. GPT-5 breaks predictions and the paper's conclusions into atomic claims and scores their overlap. GPT-5.4 led (area under the curve 1.56, against 1.33 for Gemini 2.5 Pro) and kept an F1 of 0.70 with minimal context.

Why it matters: Most science benchmarks test what a model already knows; this one asks it to anticipate a result it cannot have read, by using papers newer than its training data. It also shows which context helps most: adding the null hypothesis raised scores more than adding the experimental procedure did.

Evidence and limits: GPT-5 extracts the ground truth and grades every answer, GPT models' included, which the authors flag as a possible bias. 45 papers in three materials areas, and the benchmark had not been released. Matching a paper's stated conclusions measures agreement, not whether a prediction is right.

By Andrew J. Lew, Yuan Cao, Markus J. Buehler

arXiv 2605.30284 ↗

Unreasonable Labs' LEIA predicts how 3D lattice materials deform and where stress builds as loads are applied step by step, checked only against simulation

What happened: Haiqian Yang, Yuan Cao and Markus Buehler of Unreasonable Labs trained a model that predicts, load step by load step, how a lattice material deforms and where stress builds. On MicroPlate, their new set of 63 lattice plates with meshes of up to 442,000 nodes, its stress predictions correlated 0.94 with simulation on shapes it was trained on and 0.66 on eight held-out shapes. A design search ranked 553 candidates in 30 minutes, each 100 to 300 times faster than finite-element simulation.

Why it matters: It is the first result on the record from a company that says its engine proposes and tests hypotheses, and every test here is against the authors' own finite-element runs: nothing was built or loaded. The authors say it covers only cubic lattice plates under four kinds of load, and the benchmark is their own.

By Haiqian Yang, Yuan Cao, Markus J. Buehler

arXiv ↗

Perceptic, founded by three former Palantir engineers, comes out of stealth with a $12M seed round led by Accel to tie together the data and AI tools behind pharma's drug development decisions

What happened: Tilman Flock, chief executive, Martin Copes and Zaki Trache helped build Palantir's life sciences practice. Their software runs AI agents over a drug company's public, internal and purchased data, tracing each claim to its source, for three jobs: scouting assets to license, choosing which indications to test, and organising clinical data for trial design. Sonali De Rycker led for Accel, with Air Street Capital, whose founder Nathan Benaich gave a statement, and Elder Gull. The money is for engineering and customers.

Why it matters: Flock says most AI startups in drug development improve one step, such as a structure, a binder or trial recruitment; Perceptic pitches the layer that connects them, the decisions about which asset or indication to pursue. Every result is the company's own: due diligence cut from weeks to hours and a 50-fold rise in clinical data extraction come with no method, and of several large drug companies it says use the software it was allowed to name only CSL. Fortune reported it, quoting the chief executive and both investors.

Fortune ↗

AlphaProof Nexus resolves nine open Erdős problems with Lean-checked proofs

What happened: Google DeepMind's agent has a language model write proofs in Lean, whose compiler checks every step. Run on all 353 Erdős problems formalised in the open Formal Conjectures repository, it resolved nine, two of them open for 56 years, at a few hundred dollars each in inference, and proved 44 of 492 open conjectures from the OEIS integer-sequence encyclopedia. A basic loop of model edits and Lean checks matched the same nine, at higher cost on the hardest. The peer-reviewed version appeared in Science on 8 October 2026.

Why it matters: Lean checks every step, so a proof that compiles is right without a referee, and one agent could be set loose on hundreds of open problems at once; the team's own experts checked, for each of the nine, that the Lean statement said what Erdős asked. The check proves a statement true, not that it mattered, and nine of 353 leaves most of these problems out of reach. The cost per solved problem also leaves out the larger bill of trying all 353.

By George Tsoukalas, Pushmeet Kohli, Swarat Chaudhuri

↳ Related commentary The solved problems everyone sees
Science (preprint arXiv:2605.22763) ↗

AI co-scientist reaches peer-reviewed publication

What happened: A Nature paper reports multiple biomedical case studies and experimental follow-up for hypotheses produced by the multi-agent system.

Why it matters: Peer review and documented follow-up make the claim more inspectable than the original product preview, even if broad autonomy remains unproven.

Nature ↗

Robin links hypotheses, experiments and updated hypotheses

What happened: The system combines literature search, hypothesis generation, experimental strategy and data analysis; human researchers run the physical experiments and return the data.

Why it matters: Unlike one-shot hypothesis agents, experimental evidence returns to the system and changes what it proposes next.

FutureHouse ↗

Google's ERA, in Nature: a language model searching over code writes single-cell and COVID-19 forecasting software that beats the best human methods on their benchmarks

What happened: Eser Aygün, Michael P. Brenner and colleagues at Google Research and Google DeepMind turn writing scientific software into a search: a language model rewrites the code and tree search keeps what raises the task's score. On held-out data from the OpenProblems single-cell benchmark, 40 of its methods beat the best published one; the top, a reworked BBKNN, scored 14% above ComBat. Rerun over the 2024-25 COVID-19 season on data available on 1 May 2025, its model's average error was 26, against 29 for CDC's ensemble.

Why it matters: These are real benchmarks and real public forecasts, not toy tasks, but every test was scored on data that already existed, and Google chose and ran them. The COVID-19 result is a retrospective rerun, and the 14 models the abstract says beat CDC's ensemble were scored over three weeks. It shows that where a task has a score, search over code can reach expert software; it says nothing about tasks without one. The forward test came later, in CDC's scoring of the flu season.

By Eser Aygün, Shibl Mourad, Michael P. Brenner

↳ The later test: CDC scored an ERA-built flu model on forecasts made before the data came in A flu forecast Google says it built with its ERA coding system ranked first of 39 models in CDC's scoring of the 2025-26 season
Nature ↗

Mistral AI buys Emmi AI, a Linz start-up whose neural networks stand in for engineering simulations

What happened: Emmi AI, founded in 2024 by Johannes Brandstetter, Dennis Just and Miks Mikelsons, builds models that it says predict fluid flow, heat transfer and other physics in seconds, where a numerical solver takes days or weeks. Its founders and more than 30 researchers and engineers join Mistral's science and applied AI teams, and Linz becomes a Mistral office. Arthur Mensch, Mistral's CEO, pitched the deal at aerospace, automotive and semiconductor makers. Terms were not disclosed; Emmi had raised a EUR 15M seed round in April 2025.

Why it matters: With the purchase, a general-model company took on a physics-AI team, making simulation a line of work at Mistral beside language models. Five months later Brandstetter, by then a Mistral vice-president, spoke for the company on its plan with CERN for a collider-physics model.

Evidence and limits: No price was given. 'Seconds instead of weeks' is Emmi's own description of its models; the announcement shows no benchmark.

Emmi AI news ↗

METiS, which designs drug formulations with AI, lists in Hong Kong

What happened: METiS priced at HK$10.50, raising about HK$2.11B gross, and began trading on 13 May as 7666.HK. Eighteen cornerstone investors took 55% of the shares.

Why it matters: Unlike most AI drug companies on this record, METiS designs delivery: lipid nanoparticles and formulations. Its 6,911-times oversubscription measures demand for shares, not whether the platform works.

Sina Finance ↗

WhiteLab Genomics says AAV carriers designed by its AI platform put about 50 times more DNA into the brain than AAV9 after one injection into a vein in mice, with none found in the liver

What happened: At an ASGCT 2026 oral presentation in Boston, the Paris company reported that shells designed end to end by its ALFRED platform reached roughly 50-fold higher DNA enrichment in the brain than AAV9, the standard carrier for brain disease, after one intravenous injection in wild-type mice, and were undetectable in the liver. ALFRED works out which cell-surface receptors control entry to a tissue and designs around them rather than screening random variants. The work was done with Françoise Piguet's GENOV lab at the Paris Brain Institute.

Why it matters: Many gene therapies for brain disease are injected into the brain or the spinal fluid because the blood-brain barrier stops medicines carried in the blood, and AAV9 given by vein also reaches organs such as the liver, which the company says creates potential safety and dosing limits. A designed shell that gets into the brain from a vein, and not into the liver, would change how such therapies are given, and it was designed from receptor biology rather than found by screening.

Evidence and limits: Everything here is the company's own account: the release gives no dose, no number of animals, no timepoint and no figures, and there is no paper. What was measured is DNA in the tissue; the release also claims functional targeting, with no data shown for it, and reports no effect on an animal's disease. Mice only, and the liver claim is that nothing was detected, which rests on an assay limit the company does not give.

WhiteLab Genomics release ↗

Recursive Superintelligence launches with $650M co-led by GV and Greycroft to build AI that improves itself, valued at $4.65B

What happened: Richard Socher, formerly Salesforce's chief scientist, founded the San Francisco and London company with seven co-founders including Tim Rocktäschel, who led open-endedness work at Google DeepMind, Jeff Clune and Alexey Dosovitskiy. GV and Greycroft co-lead; NVIDIA and AMD Ventures join. Tom Hulme writes for GV that the first goal is a system with the capacity of '50,000 PhDs', aimed first at the science of AI itself.

Why it matters: It funds the most direct version of automated science: a system that proposes experiments, runs them and keeps what improves its own code and training. The company says it will turn the system to drug discovery, batteries and fusion once it works on AI research, so its first results will be about machine learning, not the natural sciences.

Evidence and limits: The valuation is the company's, repeated by GV, without a pre- or post-money basis. No result has been published; the plan for other sciences is a stated aim.

GV ↗

BiomniBench: on 100 real biomedical analysis tasks, changing the agent harness moved scores more than a model generation did

What happened: Phylo and Stanford researchers built 100 data-analysis tasks from Nature, Cell and Science papers with their authors or domain experts, and scored each agent's whole trace against expert rubrics. Claude Opus 4.7 scored 73.34 in Claude Code and 63.94 in Terminus-2; moving from Opus 4.6 to 4.7 within Claude Code added 3.8. No setup scored above 73.34 of 100.

Why it matters: A model's score on science work means little without its harness. The cleanest gap is Opus 4.7 at the same reasoning effort; GPT-5.4's larger 13.5-point gap also changed effort and turns (13 to 82). An LLM judge scores the traces (Gemini 3.1 Pro, κ 0.70 against experts), each setup was run three times, and the tasks redo published analyses rather than find anything new.

By Yuanhao Qu, Yingzhou Lu

↳ Related commentary A test of harness against model
bioRxiv preprint ↗Read More · AI4S Brief →

Isomorphic Labs raises $2.1B in a Series B led by Thrive Capital to move its AI-designed programmes toward the clinic

What happened: Alphabet and GV returned; MGX, Temasek, CapitalG and the UK Sovereign AI Fund are new. The money goes to its drug design engine, IsoDDE, moving its programmes toward the clinic, and hiring. Demis Hassabis, founder and CEO, says the approach is "fundamentally sound"; Max Jaderberg, its president, says the engine has hit milestones in internal programmes. Joshua Kushner of Thrive and Krishna Yeshwant of GV speak for the investors.

Why it matters: The round is 3.5 times its first outside round, $600M thirteen months earlier: capital is paying for the step from models to medicines before any clinical result. The milestones and speed it cites are not shown in the release, and it gives no valuation.

↳ Follows its first outside round Isomorphic Labs raises $600 million
Isomorphic Labs release ↗

Periodic Labs is in advanced talks to raise at least $500 million at a $7.5 billion valuation, led by AMP

What happened: Per three sources who spoke to Forbes, the round is led by AMP, the investment vehicle Anjney Midha founded after leaving a16z. Periodic did not respond and AMP declined to comment. Its seed round last September was $300M at $1.3B.

Why it matters: Liam Fedus and Ekin Dogus Cubuk founded Periodic to train models on data from its own autonomous labs; this would value it at nearly six times its seed price. Talks only, and media-reported: the price says how much capital is betting on that route, not that it works.

Forbes ↗

MolRecBench-Wild shows old OCSR benchmarks overstate how well models read real chemistry papers

What happened: 5,029 drawings from 820 papers, balanced for difficulty and labelled across 37 classes, split OCSR into seeing the image and representing the chemistry. 42% carry both; the best of 18 models reaches 41.05% SMILES accuracy.

Why it matters: Over-90% exact match on patent benchmarks like USPTO overstates OCSR on paper drawings; the shares reflect how drawings were picked, not the literature, and this is not production performance.

arXiv ↗Read More · AI4S Brief →

Anthropic's BioMysteryBench sets Claude 99 bioinformatics questions on real data with checkable answers; the best model solved 30% of those no expert on the panel could

What happened: Experts wrote each question from a real dataset, with an answer fixed by the data or a validated record (which organ a cell sample came from, which gene was knocked out) and a notebook showing the signal is there. Claude worked in a container with standard tools and public databases, graded on its answer alone. Up to five experts tried each question and 76 were solved by at least one. On the 23 none solved, Claude Mythos Preview's solve rate, averaged over five attempts, was 30%.

Why it matters: Grading the answer rather than the method lets a model take any route, and fixing the answer in the data rather than in a scientist's conclusion lets the benchmark hold questions people cannot answer. Five attempts per question also show how firm a win is: Opus 4.6 solved 86% of the solvable questions it got right at least four times in five, but only 44% of its wins on the hard set.

Evidence and limits: Anthropic built the benchmark with its own experts and scored only its own models, and most per-model scores are shown only in charts. A question nobody solved may have no answer in the data, as the post says. The full set, now 90 questions, is gated for evaluation only; five are public.

Anthropic ↗

Lilly will license recombinases Profluent is to design with AI, enzymes for writing long DNA into the genome: upfront undisclosed, up to $2.25B in milestones

What happened: Profluent will use its protein models to design site-specific recombinases, enzymes that insert long stretches of DNA at a chosen place in the genome, for several targets. Lilly takes an exclusive licence to carry the ones it selects through animal studies, clinical trials and sale. Profluent gets an upfront payment and committed research funding, neither sized, and is eligible for up to $2.25B in development and commercial milestones plus tiered royalties. Ali Madani, Profluent's co-founder and chief executive, speaks for the company.

Why it matters: Recombinases can write a whole gene into DNA, which today's CRISPR editors do poorly, and the usual way to get one is to search nature for an enzyme that happens to fit the site. Here a large drugmaker pays a model company to design them for chosen targets. Its other announced deals, with Revvity, Corteva and, five months later, BioMarin, give no value.

Evidence and limits: The targets, the number of programmes and the upfront are not disclosed, so the $2.25B is milestone money that depends on results nobody has shown yet. No data on a designed recombinase came with the deal.

MedTech Spectrum (company release) ↗

Fathom Therapeutics, formerly Atommap, raises a $47M Series A led by Sutter Hill Ventures for physics-based simulation of protein motion to design small molecules

What happened: The New York company's engine, Microcosmos, simulates how proteins move at atomic resolution and uses those simulations to design small molecules; the company says it speeds up such modelling 10,000-fold without losing accuracy. Co-founder and CEO Huafeng Xu leads it with co-founders Jesús Izaguirre, from Roivant Discovery and Silicon Therapeutics, and Yujie Wu, from Roivant Discovery and Schrödinger. Sutter Hill Ventures, through managing director Keith Loebner, led the oversubscribed round, with Ethan Kurzweil's Chemistry, Alexandria and NY Ventures. The money scales its lab-in-the-loop work and internal programmes.

Why it matters: Fathom's CEO says drug discovery is held back by designing against static structures of isolated proteins. Its pitch is to design against proteins as they move, computed from physics rather than learned from structures alone, and a $47M Series A shows investors paying for that route.

Evidence and limits: The 10,000-fold speed-up and the degraders found in six weeks against an "undruggable" target are the company's claims, and the release cites no paper or data for them. Its lead programme has reached animal efficacy studies, not people.

Company release (VCA Online) ↗

David Silver's Ineffable Intelligence comes out of stealth with a $1.1B seed round co-led by Sequoia and Lightspeed, at a $5.1B valuation

What happened: The London lab, founded by David Silver after he led reinforcement learning at Google DeepMind, raised $1.1B at a $5.1B post-money valuation, per its counsel Cooley. Alfred Lin and Sonya Huang of Sequoia and Ravi Mhatre and Raviraj Jain of Lightspeed lead; NVIDIA, DST Global, Index Ventures, Google, EQT Ventures, Wellcome Trust, the British Business Bank and the UK's Sovereign AI Fund take part. Silver says he will give away all his gains from his Ineffable equity.

Why it matters: It is the largest seed round in Europe, put behind a plan to build an agent that learns from its own experience instead of from pre-training on human data. It shows capital will fund that bet on reinforcement learning, and that a senior DeepMind researcher can raise a frontier-lab round before showing a result. Six more co-founders followed in September, four of them from DeepMind.

Evidence and limits: A financing says where money is going, not that the method works: the company has shown no result, benchmark or paper. The valuation is the company's, stated through its counsel. The participant list and the pledge come from Tech.eu's report of the company's statement, and the 'strategic angels' are not named.

Cooley release ↗

CuspAI open-sources kUPS, a GPU molecular simulation engine built so machine-learned force fields plug straight in

What happened: Nicholas Gao, Jonas Köhler, Felix Hanke and Anita Ramanan describe a JAX toolkit that puts molecular dynamics, Monte Carlo and geometry optimisation behind one interface and runs many systems at once on GPUs. Tuned for GPUs with NVIDIA, it ships with Tojax, which turns PyTorch functions into JAX. On one NVIDIA L4 GPU, with a metal-organic framework as the test case, it ran MACE molecular dynamics at 1.8 times the throughput of ASE and CO2 adsorption Monte Carlo at 49 times that of RASPA on one CPU core.

Why it matters: Screening materials such as carbon-capture frameworks means chaining simulation methods that live in separate CPU codes, and machine-learned force fields fit them badly. A batched GPU engine is what a company betting on AI-scale screening needs, and releasing it under Apache 2.0 lets others use it. The speed-ups are the company's own: two workloads on one material, against tools running on a CPU core or one system at a time, with no outside benchmark yet.

By Nicholas Gao, Jonas Köhler, Felix Hanke, Anita Ramanan

CuspAI technical blog ↗

Kevin Weil leaves OpenAI as OpenAI for Science is split into other research teams

What happened: Kevin Weil, who started OpenAI for Science after serving as chief product officer, said on X that 17 April was his last day, "as OpenAI for Science is being decentralized into other research teams". A company spokesperson told reporters that Prism, its writing workspace for scientists, moves to the Codex team.

Why it matters: OpenAI no longer runs science as a unit with its own head: the work now sits in the teams building its models and Codex. Its next science tools will come from there, not under the OpenAI for Science name.

↳ Prism moves to the Codex team OpenAI launches Prism for scientific writing
Kevin Weil on X ↗

Bioptimus reports its pathology model H-optimus-1 ranks first on two outside benchmarks, but 14th of 23 on tissue segmentation

What happened: In a late-breaking abstract at the AACR 2026 meeting, Marin Scalbert, Rodolphe Jenatton and colleagues describe H-optimus-1, a 1.1-billion-parameter vision model trained without labels on over 1 million slides from more than 800,000 patients at over 4,000 clinical centres. Across 13 tasks on 15 datasets, such as predicting mutations and gene activity from stained tissue, they report the best average score. Their poster adds outside rankings: first on PathBench and HEST, 3rd of 23 on THUNDER's few-shot tasks.

Why it matters: A stained tissue slide is the most common record of a cancer. A model that turns any slide into general-purpose features lets a hospital or drugmaker build a biomarker test from a smaller labelled set. H-optimus-1 is Bioptimus's main model, free for academic use since February 2025, and the poster's case is that benchmarks run by other groups, not only its own tests, put it at or near the top.

Evidence and limits: Company-reported: the abstract gives no per-task numbers, and the outside rankings are the company's reading of other groups' leaderboards. THUNDER ranks it 14th of 23 on segmentation. Nothing here tests the features in a clinical decision.

By Marin Scalbert, Rodolphe Jenatton

Cancer Research (AACR abstract LB174) ↗

Anew Labs presents AI-designed oral small molecules against all three IL-17 dimers

What happened: At AAI in Boston the team reported orally bioavailable pan-IL-17 inhibitors from its generative platform, the first molecules it says engage IL-17F/F strongly. FOCIS in June added in vivo data.

Why it matters: IL-17 blockade is an injectable-antibody market; what is new is a small molecule reaching the F/F dimer. This is conference data: no paper, no structure, no dose.

Anew Labs ↗

Five models that predict how fast an enzyme works, Zelixir's own CataPro among them, picked xylanase mutants for the lab; under one in ten of each model's picks was 20% more active

What happened: Zhongyang Zhang, Weifeng Li, Liangzhen Zheng, Nanyu Han and colleagues at Yunnan Normal University, Shandong University and Zelixir tested DLKcat, UniKP, CataPro, EITLEM-Kinetics and TurNuP on newer data, unfamiliar enzymes and mutation scans. None predicted turnover rate (kcat) accurately, and their ranking fell apart on enzymes unlike their training data. Each model then picked its top 20 mutants of the xylanase PjxA; 98 were made and measured. Agreement with measured activity was weak: UniKP did best, just above 0.2 (Pearson) and 0.3 (Spearman); CataPro and DLKcat near zero, two negative.

Why it matters: These models are offered as a way to shortlist enzyme mutants and to fill gaps in metabolic models. Run partly by CataPro's own authors, this test says they cannot yet do the first: they react when the active site is broken but ignore the molecule being converted, unable to tell a substrate from its product or an inhibitor. The authors conclude they work at best as a first filter; CataPro's picks were among the better three, though few beat the starting enzyme.

Evidence and limits: One enzyme, one round of 20 picks per model, crude-enzyme activity measured under one set of conditions, and a preprint not yet peer-reviewed. Liangzhen Zheng of Zelixir is a corresponding author of both this test and CataPro, so the group graded its own model alongside four others.

By Zhongyang Zhang, Weifeng Li, Liangzhen Zheng, Nanyu Han

+1Research Square ↗

Lee Cronin, Chemify's founder, argues in PNAS that a Chemputer with step-by-step error correction could in principle make any stable molecule, and re-reads 117 robot runs to back it

What happened: The paper defines a Chemical Synthesis Turing Machine: four primitive operations (add or remove matter, add or remove energy) as the instruction set, a compiler from reaction graph to hardware graph, and error correction at every step. Given enough fidelity per step, it argues, one reconfigurable machine can make any stable, isolable molecule. Its test is 117 routes the group had already run on its robots as χDL programs: unit operations grow roughly in line with reaction steps.

Why it matters: If synthesis is code, a route can be shared, compiled for different machines and checked automatically, the way software is. This is Cronin's formal case for programmable synthesis, and it names the obstacle: errors pile up over many steps, so the claim rests on catching and fixing them while each step runs.

Evidence and limits: Universality is argued, not shown: no new molecule was made for the paper, and the 117 routes are earlier one- to three-step runs re-counted, chosen from common medicinal, process and total-synthesis reactions. The error-correction scheme is described, not tested here, and the paper calls real-time adaptation to new chemistry a significant hurdle. Cronin founded and holds shares in Chemify.

By Leroy Cronin, Sebastian Pagel, Abhishek Sharma

PNAS ↗

Polyphron and Cellino grow aligned brain tissue from four donors' stem cells, predicting the conditions for two thinly tested donors from the other two

What happened: Cellino made four stem-cell lines from four donors' blood (both sexes, ages 24 to 54) on its automated, image-guided platform. Polyphron grew cortical neurons from them in 3D chips; one shared set of growth signals gave up to a 9-fold spread in how well the nerve fibres lined up. With two donors mapped fully and two thinly, its model picked five conditions per donor. Tested, 19 of the 20 best wells matched an optimised reference line, with 12 times fewer experiments than that line had needed.

Why it matters: Stem cells from different people respond differently to the same recipe, which is a main reason grown human tissue does not scale. Here the foundry carried what it learned on two donors over to two others with little data, the step a bank of patient-matched tissue would need.

Evidence and limits: A company white paper, not peer reviewed, with both firms reporting their own work. It targets one structural feature, fibre alignment, in four donors, and does not show the tissue predicts how drugs act in people.

Polyphron ↗

An LLM agent from Cronin's group, whose founder leads Chemify, turns published procedures into robot code and runs six of them

What happened: ACRA extracts synthesis procedures from documents, writes them as XDL, the Chemputer's Chemical Descriptor Language, checks them against the text, simulates the run and then executes it. It pulled 717 procedures out of publications, 57 from a German practical script and 117 from a PhD thesis. On 150 ChemRnD procedures, 99.33% became valid XDL and 94.67% passed the discrepancy check and simulation too; on a separate 75, its data and memory stores raised success from 85.3% to 93.3%. Six syntheses ran on a Chemputer and an Opentrons OT-2.

Why it matters: The backlog the paper is aimed at is the published literature itself: procedures nobody has repeated, written ambiguously. If an agent can turn a paper's method into a script a robot executes, repeating a synthesis costs machine time rather than a chemist's week, and the one procedure here that would not work was found by running it.

Evidence and limits: Six procedures were run, by the authors, and one is the paper's own negative result: a published sugar synthesis gave no conversion, a chemist re-ran it by hand, and the paper classes that procedure not reproducible. The high percentages are software checks, not products in a flask, and sorting a procedure into executable, blueprint or incomplete was right 67.5% of the time on 39 cases. Chemify is not on the paper, whose authors are all at Glasgow.

By Sebastian Pagel, Michael Jirasek, Leroy Cronin

Communications Chemistry ↗

LabGenius reports its machine-designed Nectin-4 x CD3 engager kills tumour cells at 0.7 pM and cuts tumour growth by over 90% in mice

What happened: LGTX-101, a trivalent VHH T-cell engager generated with LabGenius's discovery engine EVA, carries three Nectin-4 arms to one CD3 arm. On cancer lines whose Nectin-4 level is within twofold of a healthy-cell model, its mean EC50 was 0.712 plus or minus 0.132 pM, and the healthy model was not killed, a window the abstract puts above 1,000-fold. T cells fired below 5 pM in primary bladder cancer co-cultures, not with keratinocytes. In a humanised BT-474 xenograft, established tumours grew more than 90% less.

Why it matters: Nectin-4 is already a drug target, and what limits it is the healthy tissue that also carries it; LabGenius's claim is that selectivity can be engineered by how many arms have to bind at once (three to one here, so only dense target expression fires the molecule) rather than by finding a better epitope, and that its own discovery engine is what found the design. This is a conference abstract: mice and cell lines, the company's own assays, no paper, and the dosing interval it proposes rests on preliminary pharmacokinetics.

By Lucrecia Alberdi, Angus Sinclair

AACR 2026 abstract 1626 ↗

Cronin's group, whose founder leads Chemify, makes kinase inhibitors on a Chemputer and finds one that beats regorafenib in colorectal organoids

What happened: A robot synthesised a 4-anilinoquinazoline library, screened in a KRAS-mutant colorectal cancer fly model. Hit AP2-83 improved fly survival; the optimised AP4-43 beat regorafenib in a mammalian organoid growth assay.

Why it matters: A robot-made molecule got through two rounds of design and testing. Evidence stops at flies and organoids, one lab's own work, and read from the abstract only.

Communications Biology ↗

Imaging liver cells picks up compound activity at lower doses than standard toxicity assays, but does not predict cell-free assays

What happened: Axiom Bio, the Broad Institute's Imaging Platform and co-authors at the EPA and Bayer ran the Cell Painting imaging assay and two cytotoxicity assays on primary human liver cells against 1,085 compounds at eight concentrations. Among the 131 compounds active in every readout, the images flagged activity at 2.5 times lower concentrations than the metabolic assay, 7.9 than counting nuclei and 15.8 than the membrane-damage one. Predicting 412 curated ToxCast endpoints, they worked on cytotoxicity and cell-based assays and no better than shuffled labels on cell-free ones.

Why it matters: Axiom Bio sells liver-toxicity prediction from exactly this kind of imaging, and this is the public paper behind it: the images carry what happens inside a cell and nothing about a protein in a tube, so what the method can replace is bounded by biology, not by model size. A pretrained vision transformer and a convolutional network scored about the same as hand-engineered image features, so the limit here is the assay, not the architecture. The cells are one pooled five-donor hepatocyte lot, so donor variation is untested, and the ToxCast comparison uses other labs' assay designs.

By Jessica D. Ewald, Katherine L. Titterton, Anne E. Carpenter, Shantanu Singh

Cell Systems ↗

Sakana's AI Scientist, in Nature: one of three fully AI-written papers passed first-round review at an ICLR workshop, after people picked which outputs to submit

What happened: Chris Lu, David Ha, Jeff Clune and colleagues at Sakana AI, Oxford and the University of British Columbia describe a system that proposes machine-learning ideas, writes and runs the code, writes the paper and reviews it. Three manuscripts went, with the organisers' consent, to the ICLR 2025 ICBINB workshop; one scored 6, 7 and 6, above the average acceptance bar, and was withdrawn as planned. An automated reviewer they built agrees with past ICLR decisions about as well as human reviewers agree with each other.

Why it matters: It is a fully AI-written paper getting through blind human peer review, now on record in Nature. The bar was low: a workshop that accepts 70%, one paper in three, and the team filtered the most promising outputs at each stage. The authors list naive ideas, wrong implementations and hallucinated content as common failures. All of it is machine-learning research run in software.

By Chris Lu, David Ha, Jeff Clune

Nature ↗

A Fukuoka lab makes MnFeCo4Si2, a GNoME prediction, in the predicted structure: a soft magnet with a Curie temperature of 1039 K

What happened: Shuhei Naganuma and Jiro Kitagawa (Fukuoka Institute of Technology) picked MnFeCo4Si2 from the GNoME entries in the Materials Project, arc-melted about 2.5 g and annealed it at 800 C for four days. Lab X-ray diffraction fitted the predicted rhombohedral structure, with lattice parameters slightly larger than predicted; electron microscopy found no impurity phase. Magnetisation measurements show a soft ferromagnet with a Curie temperature of 1039 K and a saturation moment close to their own calculation.

Why it matters: It is the first case on this record of an outside lab making a GNoME prediction because GNoME listed it, and getting the predicted crystal and a working magnet. The GNoME paper's 736 "independently realized" crystals were made by others before anyone looked at its list.

Evidence and limits: One compound, one lab, a preprint. Mn, Fe and Co scatter X-rays almost alike, so a lab XRD fit cannot show whether they sit on separate sites as predicted or share them.

By Shuhei Naganuma, Jiro Kitagawa

arXiv 2603.22748 ↗

Xaira's X-Cell, trained on 25.6 million perturbed cells, beats earlier virtual-cell models up to five-fold on its own held-out genes, but its test loss barely improves with scale

What happened: Xaira's bioRxiv preprint pairs X-Atlas/Pisces, a CRISPRi Perturb-seq set of 25.6 million cells across 16 contexts, with X-Cell, a diffusion model that predicts how knocking down a gene changes expression. On 200 held-out genes in two cell lines it scores Pearson deltas of 0.51 and 0.48 against 0.10 for STATE, the next best; on Tahoe-100M drug data the lead is 0.31 to 0.22. Scaled to 4.9B parameters, training loss falls as a power law (exponent 0.32), test loss far more slowly (0.03). Ci Chu and Bo Wang are senior authors.

Why it matters: A virtual cell is a bet that a model can stand in for some perturbation experiments, and this tests it on genes and cell types it never saw, not only new cells. The five-fold lead is on Xaira's own held-out set, the baselines were not retrained at its scale, and the flat test loss says more parameters alone will not buy accuracy: the authors say data is the limit. No prediction was tested in a new experiment. The 55M model is released under a non-commercial licence; the 4.9B one is not.

By Ci Chu, Bo Wang

↳ Related commentary The data under virtual-cell models
bioRxiv ↗

RxnCaption and RxnID parse reaction diagrams by locating molecules first, then letting a VLM read the relationships

What happened: A detector numbers each molecule so the VLM only relates indices; RxnID uses the paper's labels, like 1a. Zero-shot, a frontier VLM leads the lenient metric; trained models lead the strict one except on scans.

Why it matters: Splitting localisation from reasoning beats asking one large model to do both; but per-diagram metrics, even the strict one, do not measure correction-free records per paper.

arXiv ↗Read More · AI4S Brief →

BioMap, backed by Baidu founder Robin Li, has reportedly filed confidentially for a Hong Kong IPO

What happened: Bloomberg, citing people familiar with the matter, says BioMap could raise hundreds of millions of dollars, with CICC, Morgan Stanley and UBS. The company has not confirmed it.

Why it matters: If it lists, a life-science foundation-model company faces public investors; until a prospectus is public, even the filing is only reported.

The Standard, reporting Bloomberg ↗

One model from Anew Labs and Tsinghua designs small molecules, peptides and nanobodies against a KRAS pocket, and peptides and small molecules against PCSK9

What happened: AnewOmni, from Xiangzhe Kong, Kai Liu, Jianzhu Ma and colleagues at Anew Labs and Tsinghua University, trains on more than 5 million complexes and assembles designs atom by atom. Against the KRAS G12D switch II pocket, 7 of 30 linear peptides, 7 of 20 cyclic ones and 2 of 3 small molecules inhibited below 100 micromolar, and 4 of 7 nanobodies bound. For PCSK9, with no binding site given, 4 of 7 peptides and 3 allosteric compounds bound below 10 micromolar, one co-crystallised 0.92 angstrom from its design.

Why it matters: Design tools are usually built one per modality: a model for small molecules, another for peptides, another for antibodies. Here one model covers all three on the same pocket, and the designs went to assay a few dozen at a time rather than through a modality-specific screen. The co-crystal is the firmest part: the pose the model drew for a PCSK9 compound sits 0.92 angstrom from the measured structure, so the model put the molecule in roughly the place it actually binds.

Evidence and limits: A preprint, not peer reviewed, and every measurement is the team's own. The potencies are micromolar, a starting point rather than a drug, and the hit rates rest on small batches: 76 molecules in all, and the abstract's 75% is three nanobodies out of four. The paper says nine allosteric designs were synthesised, then that three of ten bound. The authors say the filtering is computationally heavy and the model cannot be told what affinity to aim for.

By Xiangzhe Kong, Kai Liu, Jianzhu Ma

↳ The spin-out that turned this team into a company ByteDance's AI drug-discovery unit spins out as Anew Labs and raises $290M
bioRxiv 2026.03.12.711044 ↗

Unreasonable Labs launches from stealth with a $13.5 million round

What happened: Playground Global led, with AIX Ventures, E14 Fund and MS&AD Ventures. Yuan Cao, formerly of Google DeepMind, is CEO and MIT professor Markus Buehler is CTO. Pilots in energy, materials and pharma name no partner.

Why it matters: A DeepMind researcher and an MIT professor raising seed-sized money for a discovery engine built on concept-linking rather than lab automation. The release shows no result; what the money tests is unproven.

Unreasonable Labs ↗

Yann LeCun's AMI Labs raises a $1.03B seed round to build world models, reported at a $3.5B valuation

What happened: The Paris lab, led by CEO Alexandre LeBrun with Yann LeCun as executive chair, raised $1.03B in a seed round co-led by Cathay Innovation, Greycroft, Hiro Capital, HV Capital and Bezos Expeditions, Tech.eu reports, quoting LeCun. Its site lists the founding team as LeBrun, Laurent Solly, Mike Rabbat, Min Lin, Pascale Fung, Saining Xie and LeCun, with teams in Paris, New York, Montreal and Singapore.

Why it matters: It is a large bet against language models as the route to understanding the physical world: AMI builds models that predict in a learned representation of sensor data rather than generating it, and names industrial process control, robotics and healthcare as uses. For science it matters because lab automation and physical experiments need models of how the world behaves.

Evidence and limits: Only Tech.eu's report of the round was read; the company's own release was not found, and the valuation's basis is not stated. The company has no published result yet.

+3Tech.eu ↗

Cradle's CRADLE-1 preprint claims protein lead optimisation 4-7 times faster than rational design, counted in wet-lab rounds

What happened: Protein language models are tuned on sequences related to the target protein and then on data generated in the lab-in-the-loop. The abstract reports in-vitro validation across nanobodies, scFvs, IgGs, peptides, enzymes, CRISPR systems and vaccines, with single and polyspecific binding down to picomolar.

Why it matters: Optimising a protein someone already has is what most lab work actually is, and the claim is counted in rounds of experiments rather than scores. What the 4-7 times is measured against is not in the abstract, and the campaigns behind it are the company's own work with its customers.

By Eli Bixby, Daniel Danciu

bioRxiv 2026.03.06.710001 ↗

Evo 2 brings million-base genomic context into an open foundation model

What happened: Published in Nature, Evo 2 is trained on roughly nine trillion DNA base pairs across all domains of life with a one-million-token context window.

Why it matters: Genome modeling moves beyond local sequence effects toward chromosome-scale context, while reusable models and resources turn the paper into scientific infrastructure.

Nature ↗

RealPXRD-Solver, led by DP Technology, reads crystal structures off measured powder diffraction patterns, and solves 39 database entries whose structures had never been reported

What happened: The model was trained on 6,250,238 theoretical crystal structures, deliberately roughened to look like real measurements, and reads a pattern as a fingerprint of peak spacings and intensities, so simulated and measured data share one representation. Given the unit cell, it puts the right structure among its 20 best candidates for 91.9% of the measured CNRS set and 92.9% of RRUFF, and ranks it first for 77.9% and 78.8%. Without the unit cell, the same two CNRS figures are 79.4% and 52.4%.

Why it matters: Powder diffraction is what a chemist gets when a new material will not grow a single crystal, and earlier AI solvers worked on simulated patterns and fell over on measured ones, where peaks overlap, crystals line up one way and impurity phases show up. Coupled to an automated refinement pipeline, the model determined the structures of 39 materials in the Powder Diffraction File that had carried a unit cell but no atomic positions since they were first reported, work that normally takes an expert weeks an entry.

Evidence and limits: Every number is the authors' own, on public reference sets they chose; the 39 new structures were solved and judged by their own pipeline on standard refinement agreement factors, with no independent redetermination, and nothing was synthesised. The subsets held back from training are small, 23 and 14 entries, and their first-choice rates fall to 47.8% and 57.1%. The diffraction database's licence barred testing on all of it. A preprint, not peer reviewed.

By Qi Li, Zhuang Yan, Guolin Ke, Zhiyong Tang, Shifeng Jin, Lin Yao

arXiv 2603.00965 ↗

Generate:Biomedicines prices a $400M Nasdaq IPO

What happened: The Flagship company sold 25M shares at $16 and began trading as GENB on 27 February. Goldman Sachs and Morgan Stanley led the books.

Why it matters: Its $370M Series B in 2021 was a private bet on AI-designed protein drugs; the IPO hands that bet to public investors while the drugs are still in trials.

Generate:Biomedicines ↗

Gemini Deep Think extends Olympiad performance across sciences

What happened: Google reports gold-medal-level results on the written sections of the 2025 International Physics and Chemistry Olympiads, alongside stronger general reasoning scores.

Why it matters: The breadth matters, but so does the boundary: Olympiad success is evidence of reasoning, not yet evidence of autonomous research.

Google ↗

Leash Bio's Hermes, trained only on the company's own screening data, is tested on about 14 million held-out binding examples and lands close to Boltz-2 in Leash's comparison

What happened: Hermes is a deliberately small model trained on Leash's DNA-encoded-library screens (the July 2025 version). Leash tested it on four sets (about 13.8 million examples): new proteins (164 targets), a new chemical library (59), a public ChEMBL-derived set (403) and MF-PCBA (26). It beat the XGBoost baseline on three of the four, was slightly ahead of Boltz-2 on Leash chemistry and behind it on MF-PCBA. Both did poorly on the new library, except BRD4, where Boltz-2 scored near-perfectly, which Leash puts down to PDB structures of molecules from that library.

Why it matters: Binding models are usually tested on molecules made by the same chemists they trained on, so a good score may be recognising their style. Leash trained on chemistry nobody else made and tested on much larger sets than usual, two of them public downloads, which makes a good score less likely to be that.

Evidence and limits: Leash ran every comparison itself, and the paper says Boltz-2 may have seen part of the MF-PCBA data in training. Boltz-2 was run on samples of about 50,000 per set. XGBoost beat Hermes on the new-protein set, where Leash found a leak, and both models did poorly on the new chemical library. The post does not claim Hermes is the better model.

Leash Bio blog ↗

Isomorphic Labs' technical report says its drug design engine IsoDDE doubles AlphaFold 3 on the hardest unseen protein-ligand cases, scored by Isomorphic itself and with the method undisclosed

What happened: On the Runs N' Poses cases least like its training data, IsoDDE posed 30 of 60 ligands correctly, 17 of them where AlphaFold 3 failed. On 334 antibody-antigen pairs unlike its training set, 39% of its predictions were high-accuracy, 2.3 times AlphaFold 3 and 19.8 times Boltz-2. It also predicts binding strength, beating free-energy physics methods on public sets, and finds pockets 1.5 times better than P2Rank by one measure. The report shows results, not the model, and nothing is released.

Why it matters: AlphaFold-style models mostly fail on pockets and antibodies unlike what they were trained on, and that is where new drugs are. This report says Isomorphic has closed much of that gap, and the engine is part of what its $2.1B Series B pays for. But every number is computed and scored by Isomorphic itself, the method is withheld, and no outside team can check it. No molecule designed with it has public results.

↳ The model it measures itself against AlphaFold 3 predicts interactions across biomolecules
Isomorphic Labs technical report ↗

Terray's TerraBind, a coarse-structure model, beats Boltz-2 by about 20% on binding-affinity correlation and runs 26x faster

What happened: The arXiv preprint drops all-atom diffusion and uses only protein C-beta atoms and ligand heavy atoms. It reports about 20% higher Pearson correlation than Boltz-2 on CASP16 and on 18 of Terray's own assays.

Why it matters: Screening millions of molecules needs a cheap model. These are software scores, and the 18-assay set is proprietary, so nobody outside can rerun it.

arXiv 2602.07735 ↗

StoneWise publishes HEAD, an open-source tool that flags implausible atoms and over-strained bonds in AI-generated 3D molecules at near-quantum accuracy

What happened: Fan Fan, Bo Huang and colleagues at Beijing StoneWise Technology, with Peking University co-authors, publish HEAD (High-Energy Atom Detector) in Nature Communications: a two-stage, open-source check for 3D molecules from generative models. An AI-derived force field flags atoms made implausibly high in energy by their surroundings; a network trained to density-functional accuracy flags rotatable bonds whose torsional energy passes 2 kcal/mol. On the LigBoundConf and CSD sets of real, measured conformations, HEAD keeps above 95% of valid structures, like the geometry-based PoseBusters, but catches high-energy anomalies PoseBusters misses.

Why it matters: As generative models pour out candidate 3D molecules, telling a physically sensible one from a distorted one is the bottleneck, and the usual checks are either fast-but-crude geometry rules or slow, inaccurate mechanics energies. HEAD aims for quantum-chemistry-level judgement at a speed that can screen large batches, and it separates two faults a single score blurs together: an atom sitting in an impossible spot, and a bond twisted into a high-energy pose. Being open source, it lets other groups hold generated molecules to the same bar.

Evidence and limits: The checker is validated by how well it recovers known-good conformations and flags perturbed ones, not by any downstream gain in a real design campaign. 'Valid' and 'rational' are set by the authors' own energy thresholds (2 kcal/mol for torsions). The comparison is against PoseBusters alone, and the five generative models it was run over are named but not re-trained or improved here.

By Fan Fan, Bo Huang

Nature Communications ↗

Counting the cells a compound leaves alive predicts popular bioactivity benchmarks about as well as Cell Painting models, because many of their assays measure cell death

What happened: Srijit Seal, then at Cambridge and the Broad Institute, with Anne E. Carpenter, Andreas Bender, Ola Spjuth and four Axiom Bio scientists including co-founder Alex Beatson, reran four published benchmarks using one feature: how many cells survived. On a 209-assay benchmark, cell count alone scored a mean AUC of 0.68, a network on full Cell Painting profiles 0.67 and an image model 0.73. Of the 66 assays cell count predicted well, 64 were tumour-cell growth tests.

Why it matters: Cell images and gene-expression profiles are offered to drug discovery as extra information about what a compound does. These benchmarks could not show it, because a compound that kills cells looks active in many of their assays. The paper's fix is a cell-count baseline and dropping viability assays; on a cleaned set of 24 protein-target assays, Cell Painting models reached a balanced accuracy of 0.67 against 0.52 for cell count.

Evidence and limits: A reanalysis of public benchmarks; the only new data are dose-response images of six compounds, shown as an illustration. The cleaned benchmark is small: 24 assays across 269 compounds. Four authors work at Axiom Bio, which sells drug-toxicity prediction, and the paper declares that Carpenter and Shantanu Singh advise companies using Cell Painting.

By Srijit Seal, Ola Spjuth, Andreas Bender, Anne E. Carpenter

↳ Axiom's liver-cell imaging paper, which sets Cell Painting beside cytotoxicity assays Imaging liver cells picks up compound activity at lower doses than standard toxicity assays, but does not predict cell-free assays
Nature Communications ↗

Shanghai AI Laboratory open-sources Intern-S1-Pro

What happened: The trillion-parameter mixture-of-experts scientific model activates 22 billion parameters per query and targets scientific reasoning.

Why it matters: It makes scientific foundation models an open ecosystem contest, allowing capability claims to be inspected beyond a single lab.

Shanghai AI Laboratory ↗

OpenAI and Ginkgo report GPT-5 running an autonomous lab to cut cell-free protein synthesis cost

What happened: In six steps over six months GPT-5 ran over 580 plates and 36,000 reaction compositions in Ginkgo's cloud lab. For the model protein, cost per gram fell from $698 to $422 and titer rose 27%.

Why it matters: A real hardware loop with a cost number. But it ran in the companies' own lab, the benchmark is another group's preprint, and 6 of 12 proteins showed on a gel.

By Alexus A. Smith, Yunxin Joy Jiao, Reshma P. Shetty

OpenAI and Ginkgo report ↗

OpenAI launches Prism for scientific writing

What happened: The LaTeX workspace combines drafting, citations and model assistance and is made free to ChatGPT users.

Why it matters: The consequential move is into the daily research surface, where assistance can shape how evidence is written, cited and shared.

OpenAI ↗

Ricursive Intelligence, founded by AlphaChip's co-creators, raises a $300M Series A led by Lightspeed at a $4B valuation

What happened: Anna Goldie (CEO) and Azalia Mirhoseini (CTO), who built AlphaChip at Google, founded the Palo Alto lab to speed up chip design with AI. Lightspeed leads at a $4B post-money valuation, less than two months after launch; DST Global, NVentures, Felicis, 49 Palms, Radical Ventures and Sequoia join. Guru Chahal of Lightspeed speaks for the lead. The money is for hiring and compute.

Why it matters: Chip design is an engineering science where AI already has a deployed track record: the company says AlphaChip was used in four generations of Google's TPU and by outside chipmakers. The round puts frontier-lab money behind using AI to design the hardware AI runs on, a loop several 2026 startups now chase.

Evidence and limits: A round shows where money goes, not that the method works: the company has published no result of its own. How widely AlphaChip is used is the company's own account.

PR Newswire ↗

Smirk shows common molecular tokenizers silently erase rare chemistry, and closes the gap with 165 tokens

What happened: Auditing 35 tokenizers, Michigan and Carnegie Mellon find closed atom vocabularies turn valid but rare bracket atoms into [UNK]; Smirk's 165 base tokens cover all of OpenSMILES by construction.

Why it matters: A model's ceiling starts with what its input preserves; the gains are the same team's computation, not isolated to the tokenizer.

Isomorphic Labs signs a multi-target drug-design deal with Johnson & Johnson across modalities, large-molecule and biologics design included: Isomorphic designs in silico, J&J runs the assays

What happened: Under the deal Isomorphic makes the predictions and designs, and Johnson & Johnson, through Janssen Biotech, runs the experimental assays and takes programmes forward. Isomorphic says its design engine makes candidates against hard targets as small molecules, antibodies, peptides and molecular glues, and that this deal uses that range, large-molecule and biologics design included. Sarah Skerratt, Isomorphic's chief research officer, is quoted in the release.

Why it matters: Isomorphic's 2024 deals with Lilly and Novartis were for small molecules. This one takes its large-molecule and biologics design to a third large drugmaker, under a split that leaves every wet-lab test to the partner, so J&J's assays are where the engine's designs get checked.

Evidence and limits: No financial terms, targets, number of programmes or timeline were given, and no design from the deal has been reported since.

Isomorphic Labs ↗

Nature corrects the A-Lab paper: "novel" meant new to its prediction platform, and 36 of 40 reported syntheses are confirmed

What happened: The authors of the 2023 A-Lab paper, including Ekin Dogus Cubuk and Amil Merchant of Google DeepMind, concede that its novelty claims "were subject to misinterpretation": the materials were "new to the prediction platform, not necessarily new to science". The title drops "novel". A manual re-analysis of the diffraction data, peer-reviewed after publication, confirms 36 of 40 reported successes; four are now counted as inconclusive, and Zn2Cr3FeO8, which was in the training data, is removed.

Why it matters: A-Lab and GNoME were published together as the case that AI could predict new materials and a robot could make them. The correction narrows the A-Lab half to what the critics said in 2024: the lab made compounds its own prediction platform had not listed, most of them already known to chemistry.

Evidence and limits: Being made in the lab still stands for 36 compounds. The correction does not say which of them are new to science, and powder X-ray diffraction alone cannot rule out the disordered forms the critics pointed to.

By Nathan J. Szymanski, Yan Zeng, Gerbrand Ceder

Nature ↗

Converge Bio raises a $25M Series A led by Bessemer to sell drug developers ready-made AI systems for antibody design, protein yield and target discovery

What happened: Bessemer Venture Partners led the oversubscribed round, with TLV Partners, Vintage Investment Partners, Saras Capital and unnamed executives from Meta, OpenAI and Wiz; the company says it takes its total raised to $30M, after a $5.5M seed led by TLV Partners in November 2024. Dov Gertz, chief executive, Oded Kalev and Iddo Weiner founded it in 2024; it is based in Boston and Tel Aviv. It trains models on DNA, RNA and protein sequences and sells them as finished systems that plug into a customer's workflow.

Why it matters: Converge sells AI to drug developers rather than developing its own drugs, and its pitch is the distance between a model that scores well on a benchmark and a system a biologist can use. The release says it ran over 40 programmes for more than a dozen customers in a year, finding antibodies that bind at single-digit nanomolar strength and raising protein yields 4- to 7-fold. Those are the company's own figures, from its release, not from a paper. No valuation was disclosed.

Converge Bio ↗

Basecamp Research's EDEN model designs enzymes that insert large DNA at a chosen spot in the human genome, and half of them worked in human cells

What happened: EDEN, from Basecamp Research, is a family of DNA models including one of 28 billion parameters, trained on 9.7 trillion nucleotide tokens of the company's own BaseData. Prompted with 30 bases of a target site, it designed large serine recombinases: the paper reports active ones at all ten disease-linked genes and four safe-harbour sites it tested, a 63.2% hit rate on prompts outside the training data, and half the designs active in human cells, inserting a CAR into primary T cells.

Why it matters: Putting a whole gene into a genome usually means a virus or a cut in the DNA, which caps the payload and brings safety risk. A recombinase swaps DNA in at a site it recognises instead, but each site has needed its own enzyme, and finding one was a project in itself. Here 30 bases of a target were enough to get working enzymes at every site the paper reports testing. If that holds up outside the company, the enzyme is designed for the site rather than searched for in nature.

Evidence and limits: A preprint, not peer reviewed. The experiments are the authors' own, Basecamp with its co-authors (NVIDIA, Microsoft, and the University of Pennsylvania on the peptides), with no outside evaluator. "Active in human cells" is cell culture, not an animal or clinical result, and BaseData is proprietary, so others cannot rerun the benchmark comparisons. GEN's report of the same work carries figures the abstract does not (insertion at over 10,000 locations, over 90% tumour-cell clearance); the full text was not read.

By Geraldene Munsamy, Philipp Lorenz

bioRxiv 2026.01.12.699009 ↗

Tsinghua's DrugCLIP screens about 10,000 human proteins against 500 million compounds, and its picks hit in the lab at 15% and 17.5% on two targets

What happened: In Science, Yinjun Jia, Yanyan Lan and colleagues at Tsinghua's Institute for AI Industry Research and other labs train a contrastive model that puts protein pockets and molecules in one space, so screening becomes a lookup, up to 10 million times faster than docking. In the lab its picks hit 15% of the time on the norepinephrine transporter, with two inhibitors solved in complex with it, and 17.5% on TRIP12, a target with no known small-molecule binders, using only AlphaFold2 structures.

Why it matters: Docking is too slow to run against every human protein; this makes it cheap, and the precomputed results are open as GenomeScreenDB. The hits were measured in the lab, but by the authors themselves, and the hit rates come without a figure for how potent the hits are. It is the method behind AIPher, the Tsinghua AIR spin-out that raised an angel round in September.

By Yinjun Jia, Yanyan Lan

Science ↗

GSK licenses Noetik's virtual-cell cancer models for five years: $50M upfront and in near-term milestones, then annual fees

What happened: Noetik announced a five-year, non-exclusive licence giving GSK's AI and therapeutics teams direct access to its OCTO-VC models of lung and colorectal tumours, trained on Noetik's own spatial profiling of human tumour samples. The deal carries $50M in upfront capital and near-term milestones plus annual licence fees, and the two will generate new spatial datasets together. Kim Branson, GSK's head of AI and machine learning, said foundation models are only as good as their training data.

Why it matters: Noetik presents it as a move from paying for AI services to licensing a model by subscription, and its chief business officer, Shafique Virani, called it among the first and largest such deals; that ranking is the company's own. It shows what GSK will pay for tumour data built into a model, not that the model finds drugs: the release reports no result from using it.

Noetik release ↗

Bayer signs a three-year deal to use Cradle's protein-design software across its antibody pipeline

What happened: Bayer's antibody scientists get full access to Cradle's platform for finding and optimising leads, after a proof of concept in which Bayer chose Cradle over several vendors. The two will also run a joint machine-learning research project. Anastasia Hager, Bayer's global head of drug discovery sciences, and Stef van Grieken, Cradle's co-founder and chief executive, spoke for the companies. No financial terms were given.

Why it matters: Bayer is buying software its own scientists run, not handing molecules to Cradle for milestone payments, the asset-based deal van Grieken sets this against. Choosing it after a proof of concept says the platform passed Bayer's own trial; the release gives no result from that trial.

Bayer and Cradle release ↗

2025

Insilico Medicine lists in Hong Kong, raising HK$2.03B net

What happened: Insilico sold 94.69M shares at HK$24.05 and began trading the same day as 3696.HK. The Hong Kong tranche was 1,427 times subscribed.

Why it matters: Public investors now price an AI drug-discovery company directly; the trials of its fibrosis drug, not the platform, will move that price.

Gelonghui ↗

SAGA, an agent that rewrites its own design goals, gets one E. coli hit from 28 tested molecules and three PD-L1 nanobody binders from 24

What happened: Academic groups and Deep Principle, including its co-founders Chenru Duan and Haojun Jia, built SAGA: LLM agents read each round's results, propose new objectives and write them as scoring code that an optimiser then runs. Of 28 antibiotic designs made and tested, four cut E. coli growth by over 80% alongside a membrane-opening helper; one showed minimal toxicity to two human cell lines at its MIC, 128 µg/mL. Three of 24 PD-L1 nanobodies bound, at 300-400 nM.

Why it matters: The paper's claim is that design agents fall short at choosing what to optimise, so the agent should rewrite its targets as it goes. The lab results are first hits from the authors' own assays: the antibiotic screen used a helper that opens the bacterial outer membrane, and one weak hit is far from a drug. The materials and chemical-process designs were checked only by calculation.

By Yuanqi Du, Chenru Duan, Wengong Jin

+2arXiv 2512.21782 ↗

Latent Labs designs antibodies from scratch that bind 9 of 18 targets; four designed against one of them raise no detectable immune response in ten donors' cells

What happened: Latent-X2 is given a target structure and an epitope and writes both the sequence and the all-atom structure of a VHH or scFv antibody. Testing at most 24 designs per target per antibody format, Latent Labs got binders against 9 of 18 targets at picomolar to nanomolar affinity, with expression, aggregation and stability matching approved antibodies and no optimisation step after generation.

Why it matters: Immunogenicity is one of the reasons antibodies fail in the clinic, and the authors say nobody had measured it on an AI-designed antibody before. Four VHHs designed against one target, TNFL9, were put on immune cells from ten healthy donors: no detectable T-cell proliferation and no detectable cytokine release, a profile the paper calls comparable to caplacizumab, an approved VHH drug. Donor cells in a dish are a proxy; no animal or human data exists yet.

By Henry Kenlay, Simon A. A. Kohl

arXiv, posted 2025-12-23; full text read ↗

SDE, a 1,125-question discovery benchmark from Deep Principle and 25 institutions: the best models score 0.60-0.75, against 0.86 on GPQA-Diamond

What happened: Each question sits inside a research scenario rather than standing alone. Where open datasets allowed, questions were templated from them; the experiment-related ones were drafted by a domain expert, and every one went through panel review. Best scores: 0.71 biology (Claude Opus 4.1), 0.60 chemistry (Claude Sonnet 4.5), 0.75 materials and 0.60 physics (GPT-5). Turning GPT-5's reasoning effort from medium to high moved three domains barely at all (0.70 to 0.69 biology, 0.74 to 0.75 materials, 0.58 to 0.60 physics) and chemistry by 0.07.

Why it matters: Exam-style benchmarks put these models near the top on science questions; put a question back in a researcher's context and a quarter to two-fifths of it goes wrong. More thinking time mostly does not close that, which points at what the models lack rather than how long they get. The scores were computed by the team that assembled the questions, and the company that led the work sells scientific agents. The paper declares no competing interests.

By Zhangde Song, Haojun Jia, Huan Sun, Chenru Duan

+2arXiv 2512.15567 ↗

FrontierScience exposes the gap between exam and research performance

What happened: OpenAI reports strong results on Olympiad-style questions but much lower scores on open-ended research tasks.

Why it matters: The useful result is the gap itself: solving bounded problems does not yet transfer cleanly to open-ended research.

OpenAI ↗

METiS designed its liver-cancer drug's mRNA sequence with its own algorithm, and the drug cleared tumours in mice

What happened: In Nature Communications, METiS TechBio reports MTS105: a lipid nanoparticle carrying mRNA that makes the liver itself produce a T cell engager against the liver-cancer marker GPC3. The company designed the mRNA sequence with its own MrNatty algorithm, which it says pairs RNA structure prediction with natural-language-processing methods. On three weekly doses of 0.5 micrograms a mouse, liver tumours disappeared completely and had not returned after 84 days; monkeys dosed to 45 micrograms per kilogram showed no severe adverse effects. A first-in-human trial, NCT06689540, is recruiting.

Why it matters: METiS listed in Hong Kong as a company that designs drug delivery with AI, and this is the first paper on this record where that design appears as a drug tested in animals rather than as a platform description. What the algorithm designed is the mRNA sequence; the lipid the paper says was designed and made in-house, with no method given for choosing it. The tumour result is the company's own mouse experiment, and the antibody drug it is compared against was picked by the company. The human trial has reported nothing.

By Yan Huang, Shaoli Liu, Andong Liu, Wei Xu

Nature Communications ↗

DataHow's software steers a Merck Serono antibody perfusion bioreactor for 20 days and reaches a cell-volume target standard runs miss

What happened: In Biotechnology and Bioengineering, DataHow and Merck Serono, with DataHow co-founders Michael Sokolov, Fabian Feidl and Alessandro Butté among the authors, link Bayesian experimental design and a hybrid process model to 24 parallel mini-bioreactors. After a 24-run training experiment, the software set temperature, stirring, perfusion and pyruvate once a day from day 9. One bioreactor reached a 30% viable-cell-volume target; standard runs average under 20%. For a new clone, aiming at 98% viability, steered runs kept viability above unsteered ones.

Why it matters: Self-driving labs usually make molecules or materials; this one steers living cell cultures for weeks, in the step of making a drug once it is found. Each goal was tried in one or two bioreactors at one company, against three unsteered ones, with results shown as plots, not effect sizes. For the new clone the model got it right only after retraining on half the run's data, and product quality was not controlled.

By Chethana Janardhana Gadiyar, Mariano Nicolas Cruz Bournazou

Biotechnology and Bioengineering ↗

Google DeepMind will open its first automated lab, for materials science, in the UK in 2026

What happened: Part of a wider UK government partnership. Robots directed by Gemini are to make and measure hundreds of materials a day; DeepMind names superconductors, batteries, solar cells and chips as targets.

Why it matters: DeepMind's materials work moves from predicting crystals to running its own experiments. Artem Mishchenko has led building the lab since November 2025.

Google DeepMind ↗

Owkin's slide-reading recurrence test separated breast-cancer patients better than two commercial gene assays in two hospital cohorts, on 7 and 42 recorded recurrences

What happened: RlapsRisk BC reads a routine H&E slide and a few clinical facts. At the San Antonio Breast Cancer Symposium 2025, Owkin and co-authors at Gustave Roussy and MD Anderson compared it with EndoPredict in 381 Gustave Roussy patients (7 distant recurrences) and with Oncotype DX in 154 node-negative MD Anderson patients (42), all followed at least five years. Areas under the curve for five-year distant recurrence-free survival: 0.73 against EndoPredict's 0.57, and 0.78 against Oncotype DX's 0.58. Its high-risk group held 6 of 7 recurrences and 35 of 42.

Why it matters: Oncotype DX decides whether a woman gets chemotherapy, so a model that reads the slide the hospital already has would be cheaper and need no tissue sent away. This is not yet evidence it can take that decision: the analysis is the company's own, looking back at archived slides, and 7 recurrences in one cohort cannot separate two tests. The abstract itself says the test 'may support' de-escalation.

SABCS 2025 (Clin Cancer Res) ↗

ChemLex raises $45M led by Granite Asia and opens an automated synthesis lab in Singapore as its global headquarters

What happened: The Shanghai-founded company announced the round and the lab the same day. Founder and CEO Sean Lin says the plant runs a 24/7 automated synthesis line that plans, runs and records chemistry, and that the money goes on engineers and chemists in Singapore; Granite Asia partner Yinghui Kuang spoke for the lead. ChemLex says it has served more than 70 customers in three and a half years, six of them among the ten largest drugmakers, and signed a memorandum with Singapore's drug development centre, EDDC.

Why it matters: It is a Chinese AI-chemistry company putting its global headquarters and its automated lab in Singapore, with the state investment board at the launch, which is where the money for this kind of work is going this year. What is on the record is a lab and a customer count the company states; no yield, cycle time or comparison with a conventional CRO is published, so “months of synthesis and optimisation into weeks or even days” stays the chief executive's own claim.

ChemLex release (EDB) ↗

LabGenius' robotic loop built 980 T-cell engagers over five cycles and found ones that killed HER2-high cells at single-digit picomolar and left the low-HER2 model untouched

What happened: Justin Grace, Gino van Heeke and colleagues at LabGenius searched 44,160 HER2 x CD3 designs (valency, topology, linker, affinity) with multi-objective Bayesian optimisation, building and assaying 980 of them over five cycles under six weeks each. Several leads killed the cancer cell model below 10 pM with no measurable killing of the healthy model up to 100 nM, which the paper puts as selectivity of 10,000-fold or more, over 400 times the 22.9-fold of runimotamab, a clinical-stage benchmark, in the same assay.

Why it matters: On-target damage to healthy tissue is what has kept T-cell engagers out of solid tumours, so a loop optimising the gap between two cell lines aims at the real obstacle. The selectivity figure is a floor, not a measurement: it comes from seeing nothing at the highest dose tested. Everything is cells in a dish, run in-house with two donors per lead, and the paper says these readouts may not match a body. The healthy model is one cell line, T47D, which the paper says carries about as much HER2 as cultured heart muscle cells.

By Justin Grace

mAbs ↗

Within DFT's own error, the usual computed score for electrocatalysts rates more than a third of the surfaces in Open Catalyst's datasets as good as the best known, a Mila-led preprint finds

What happened: Shahana Chatterjee, Félix Therrien and colleagues at Mila, four Canadian universities and Entalpic ran their own DFT checks and put the error of a single adsorption energy at about 0.3 eV on metal surfaces and 0.5 eV on oxides. With that error, the thermodynamic overpotential for hydrogen and oxygen evolution puts 37% of OC20's surfaces and 34% of OC22's (47% after a quality filter) level with platinum or iridium oxide, though the materials were drawn at random. A stability test keeps fewer than 5% of the OC22 oxides.

Why it matters: Machine-learning catalyst work, including models trained on Open Catalyst data, commonly ranks candidates by this overpotential, and generative models could optimise for it. If a third or more of random materials tie with the best within error, the score cannot pick winners, even though it still finds platinum. The authors suggest screening first on stability, cost and ease of synthesis. It is a short arXiv preprint built mostly on the datasets' own calculations, with no laboratory experiments.

By Shahana Chatterjee, Félix Therrien

arXiv 2512.05938 ↗

LeMat-GenBench scores 12 crystal generative models: on average, the more stable their structures, the less novel and diverse

What happened: Entalpic, with Hugging Face, Mila and university co-authors, released an open evaluation suite and a public Hugging Face leaderboard for models that generate inorganic crystals. Across 12 recent models, stability went with lower novelty and diversity on average, and no model led on every measure.

Why it matters: A common yardstick for generated crystals makes claims of new materials comparable across labs. Every score is computed: no structure was made, and stability here is a calculated estimate, not a measurement.

By Siddharth Betala, Alexandre Duval

arXiv 2512.04562 ↗

Generate:Biomedicines takes an AI-optimised asthma antibody into two Phase 3 trials

What happened: GB-0895, an anti-TSLP antibody, enters two placebo-controlled trials in about 1,600 people with severe asthma, dosed every six months. By August 2026 both were recruiting, approved in 33 countries.

Why it matters: Phase 3 tests the drug, not the design method. No efficacy data yet, and the AI role is the company's own account.

Generate press release (PR Newswire) ↗

Iktos's robot runs 135 reactions of 27 kinds in six batches by grouping them on temperature and time, and finds the product in 97

What happened: Rather than one reaction type per robot run, Iktos grouped reactions whose chemist-set temperature and time windows overlap, so different chemistries share a reactor. Its retrosynthesis tool Spaya picked the routes, chemists assigned conditions, and a scheduler packed 135 one-step reactions of 27 types into six clusters over three campaigns on a Chemspeed robot. LC-MS found the product in 86 (64%); rerunning 14 failed reductive aminations under new conditions raised that to 97 (72%). Of 12 sent out for purification, 10 came back above 90% pure.

Why it matters: Generative models propose lists of unrelated molecules, and robots built for one-chemistry libraries stall on exactly that, so this works on the make step where AI design meets the bench. The bar for success is the product seen at 5% of the UV trace, not isolated yield, and purified yields ran 4 to 48%. Chemists still chose the targets, the conditions and the reruns: this is a scheduling method for a robot, not an autonomous lab.

By Franck Le Vaillant

Chemical Science ↗

The United States launches the Genesis Mission

What happened: An executive order directs the Department of Energy to connect federal scientific data, compute and facilities around AI-driven research challenges.

Why it matters: AI4S becomes a national infrastructure and competitiveness program rather than only a lab or company strategy.

↳ Related commentary The Genesis Mission, his main case
↳ Related commentary Twenty-six challenges, or a few
White House ↗

AI Proteins raises a $41.5M Series A for AI-designed miniprotein drugs, and will spin programs out as subsidiaries

What happened: Mission BioCapital and Santé Ventures led the Boston company's round, with existing investors Lightchain Capital and Cobro Ventures. Founder and CEO Chris Bahl designed miniproteins as a postdoc with David Baker and was founding faculty at the Institute for Protein Innovation; the company says it has made molecules against more than 150 targets. It also moved to a hub-and-spoke model, with programs as LLC subsidiaries. Steve Tregay of Mission BioCapital and Omar Khalil of Santé spoke for the leads.

Why it matters: It is money for the miniprotein route out of the Baker lab: small proteins designed from scratch, made and tested at high throughput, as an alternative to antibodies. What backs it is the company's own count of 150 targets and 'multiple' programs with animal proof of concept, with no data in the release, plus a 2024 BMS option deal worth up to $400M in milestones. The subsidiary model is a bet that the platform outlasts any one drug.

AI Proteins release ↗

Chai Discovery reports Chai-2 designing full-length antibodies that pass developability screens, and binders to six GPCRs

What happened: Chai moved Chai-2 from antibody fragments to full-length IgGs. Of 88 designed IgGs against 28 targets, 86% raised at most one flag on four developability tests, and 24 targets gave at least one clean design. Cryo-EM of five complexes matched the predicted binding sites. Testing 10 to 73 designs per target found a binder for each of six GPCRs, two of them agonists, and two binders to a KRAS G12V peptide-MHC that spared G12D and wild-type.

Why it matters: Binding alone does not make a drug; this tests whether the designs also look manufacturable and hit the intended spot. Every assay was Chai's own, in a preprint, and developability flags are screening thresholds, not evidence a molecule will work in people.

Chai Discovery; preprint on bioRxiv ↗

EvolutionaryScale, the team behind the ESM3 protein model, joins Chan Zuckerberg's Biohub

What happened: The team joins Biohub, the Chan Zuckerberg nonprofit, and co-founder Alex Rives becomes its head of science. Biohub is growing its compute tenfold, to 10,000 GPUs by 2028. No terms were disclosed.

Why it matters: A startup that raised a seed of more than $142M in 2024 now works inside a nonprofit: its next protein models are paid for by philanthropy, not by customers.

↳ Related commentary The Biohub data push
Biohub ↗

Accipiter Bio leaves stealth with a $12.7M seed and deals with Pfizer and Kite; it designs proteins that act on several pathways at once

What happened: Takeda and Flying Fish Partners co-led the seed, joined by Columbus Venture Partners, Cercano Capital, Washington Research Foundation, Alexandria Investments, Pack Ventures and Argonautic Ventures. Matthew Bick (CEO), Javier Castellanos (CTO) and Hector Rincon (CSO) founded the Seattle company. Pfizer signed a research and licence deal with an upfront payment and over $330M in possible milestones; Kite Pharma signed a multitarget deal for molecules used in cell therapies.

Why it matters: Antibodies and multispecific drugs mostly block pathways. Accipiter designs proteins from scratch, including ones that switch pathways on, several on the same cell in one molecule, in place of a combination of drugs that may not reach the cell together. The founders come from Seagen, Merck, Neoleukin and the Institute for Protein Design, and worked on the first fully de novo protein to enter clinical trials. Heather Gorham of Flying Fish sits on its board.

Evidence and limits: The release shows no data on any designed molecule, and the under-two-month cycle from design to lab is the company's own figure.

+1GlobeNewswire ↗

Edison Scientific spins out of FutureHouse

What happened: A for-profit company is created to commercialize scientific agents while FutureHouse remains a nonprofit research lab.

Why it matters: The field experiments with separating public-interest research from commercial deployment.

FutureHouse ↗

Edison Scientific's Kosmos runs analysis-and-reading loops for up to 12 hours; scientists found 79.4% of 102 checked report statements accurate

What happened: Given an objective and a dataset, Kosmos shares a structured world model between a data-analysis agent and a literature agent over about 200 agent rollouts; a run executes 42,000 lines of code and reads 1,500 papers on average. Scientists checked 102 statements from three reports: 85.5% of data-analysis statements reproduced, 82.1% of literature statements held, and 57.9% of interpretive ones. Of seven highlighted findings, three reproduce unpublished or preprinted results it had not seen.

Why it matters: The test is whether an agent can stay on one question long enough to reach a finding, and here outside data and unpublished results are the check. But the checkers and the groups who estimated 6.14 months of work per run are the paper's co-authors and collaborators, the weakest statements are the interpretations, and the new findings were checked against other existing datasets, not new experiments; one wet-lab test is under way.

By Ludovico Mitchener, Andrew D. White, Sam Rodriques

arXiv 2511.02824 ↗

Genesis says its Pearl model places drug molecules in proteins about 14% better than AlphaFold 3

What happened: Genesis's preprint reports Pearl beats AlphaFold 3 on the public Runs N' Poses and PoseBusters tests, by 14.5% and 14.2% at placing a molecule within 2 Å with a valid pose.

Why it matters: Genesis ran the comparison itself. The 3.6x gain is on its own private targets, and Pearl runs only inside Genesis.

arXiv preprint ↗

METiS says MTS-004, a tablet whose formulation its own AI tool designed, met the primary endpoint of a 264-patient Phase 3 in uncontrollable laughing and crying

What happened: The randomised, double-blind, placebo-controlled trial enrolled 264 patients whose pseudobulbar affect followed ALS, multiple sclerosis, stroke, head injury or Parkinson's disease, at 48 hospitals over 9.5 months, led by Dongsheng Fan of Peking University Third Hospital. The company reports statistically significant gains over placebo on the CNS-LS lability score, on clinician and patient impression of change, on the SF-36 mental-health index and on bulbar function, with benefit from week 2 across 12 weeks of treatment. It expects to file for approval in China in 2026.

Why it matters: The AI here designed the formulation, not the molecule: METiS's AiTEM tool predicted how a drug and its excipients behave together, to make a tablet that dissolves in the mouth for patients who often have trouble swallowing. The company says that took formulation work from the industry's usual one to two years down to under three months. What the trial tested is the tablet, in patients: whether it relieves the symptom. Whether the tool shortened the work is a separate claim, and the trial does not speak to it.

Evidence and limits: No numbers are public: the release does not name the primary measure and gives no effect size, p-value or adverse-event rate, and no paper or registry record was read. The three-month figure is the company's, against an industry average it states itself. MTS-004 is a Category 2.2 improved new drug in China, a new formulation of an active ingredient already known, which the release does not name, so the trial tests the formulation and the indication, not a new mechanism.

METiS release (PR Newswire) ↗

A classifier trained on known crystals estimates that 80-84% of GNoME's predicted compositions are likely to be disordered

What happened: Konstantin Jakob, Aron Walsh, Karsten Reuter and Johannes Margraf (Fritz Haber Institute, Imperial College London, University of Bayreuth) trained models on the ICSD crystal database to predict from a composition alone whether a compound shows substitutional disorder, where atoms of different elements share a site. The best reached 90% accuracy on a held-out test set. Applied to GNoME's 554,054 public structures, it predicts 80-84% likely disordered, against 39-47% for the Materials Project.

Why it matters: GNoME, like most computed databases, lists each compound as a perfectly ordered crystal. If most of its compositions would form disordered in a real furnace, the predicted structures and properties describe a material that would not actually be made, and many "new" entries would be known disordered compounds written in ordered form. A composition-only check like this can be run before anyone tries a synthesis.

Evidence and limits: The estimate is itself a prediction, and the authors call GNoME a "sizable covariate shift" from the classifier's training data. They add that ordered predictions remain useful; no GNoME compound was made to test it.

By Konstantin S. Jakob, Aron Walsh, Karsten Reuter, Johannes T. Margraf

+1Advanced Materials ↗

Lila Sciences raises a $350 million Series A

What happened: Lila closes its Series A at $350 million: Braidwell and Collective Global co-led the first $235 million in September, and NVentures, Analog Devices and IQT joined the second close. Total raised reaches $550 million, for more AI Science Factories and a first cohort of customers. Geoffrey von Maltzahn, co-founder and chief executive, announced it.

Why it matters: Investors paid $350 million before Lila had published any result, for the plan of turning a lab into a data source for models. Whether customers use the platform is the next thing to check.

Lila Sciences ↗

Periodic Labs launches with a $300 million seed round

What happened: Former OpenAI and DeepMind researchers form a company focused on AI-driven physical experimentation and materials discovery.

Why it matters: A record-sized seed round signals investor belief that experimental infrastructure can be a standalone AI platform.

Periodic Labs ↗

Prophet, pretrained on 4.7 million perturbation experiments, screens 1.9 million compounds for melanoma, and four of the five sent to the lab cut melanoma cells' viability

What happened: Yuge Ji, Fabian Theis and colleagues pretrained a transformer on 4.7 million conditions from public screens (26,000 genetic and chemical perturbations, 1,550 cell states) to predict gene expression, viability and cell shape for perturbations and cells it had not seen together. It beat linear, random-forest and neural-network baselines. Screening all 1.9 million ChEMBL compounds across 1,406 cell lines, 2.7 billion predicted experiments, it picked compounds for melanoma; four of the five tested reduced viability in two melanoma lines but not in HeLa cells.

Why it matters: Measuring every compound in every cell type is out of reach, so a model that carries what it learned in one assay or cell line to another could choose which experiments are worth running. Prophet's claim is that training across unrelated screens makes its predictions better than a model trained on one, and the melanoma screen tests it on compounds the training data had not covered. It is the basis of Reflector Bio, which the first author founded.

Evidence and limits: The lab check is five compounds in three cell lines, run by the authors, and the paper gives no doses for the five; cell death by apoptosis was confirmed for two. The compounds were chosen because their predicted effects resembled approved drugs, so the screen points to known biology rather than a new mechanism. It is a preprint, not peer reviewed.

By Yuge Ji, Fabian Theis

bioRxiv ↗

ODAC25, a 60-million-calculation dataset for direct-air-capture sorbents, takes 460 of its MOFs from CuspAI's generator

What happened: Meta's FAIR team with Georgia Tech, Carnegie Mellon, Oak Ridge, Rice and five CuspAI authors report nearly 60 million DFT single-point calculations of CO2, H2O, N2 and O2 adsorption in 15,000 metal-organic frameworks. CuspAI's transformer generated 53,000 candidates, 4,000 survived filtering and 460 entered the dataset. Of the machine-learned potentials released with it, eSEN trained on the full set reports an adsorption-energy error of 0.078 eV.

Why it matters: A startup's generated structures go into a public dataset others will train on, so its model's output is there for anyone to test against. The released potentials are not scored against DFT alone: their Henry's coefficients are set beside experimental values from the literature, where the journal version has eSEN trained on the full set reaching 0.0085 eV for nitrogen against a conventional force field's 0.0190, while on CO2 the larger UMA-Medium leads instead.

Evidence and limits: CuspAI co-wrote the paper and nobody made a sorbent for it. The experimental check is three MOFs and two gases, against literature coefficients that are scarce: where duplicates exist their spread is 0.016 eV for CO2 and 0.009 for nitrogen, about the size of the best model's error. That nitrogen figure also moved between versions, from 0.0433 in the preprint, worse than the force field, to 0.0085 here.

+3Nature Chem. Eng. ↗

Profluent's language-model-designed gene editor OpenCRISPR-1 edits human cells, in Nature

What happened: Ali Madani's team trained language models on over 1 million CRISPR operons and generated editors about 400 mutations from SpCas9. Several matched or beat it on activity and specificity in the paper's tests, and OpenCRISPR-1 also works with base editing.

Why it matters: A generated protein was made and run in human cells, past a score on a screen. Profluent wrote and ran the tests, and the abstract reports no test in animals or patients.

By Jeffrey A. Ruffolo, Ali Madani

Nature ↗

Latent Labs' binder model hits 91-100% lab hit rates on three macrocycle targets, from 11 to 17 molecules assayed each

What happened: Latent-X generates a binder's all-atom structure and sequence together with the target, for a chosen epitope. Of the top 30 macrocycle designs submitted per target, 11 to 17 were made and measured, and 91-100% bound MDM2, MCL-1 or PD-L1; on five mini-binder targets, among them IL-7R-alpha, TrkA and the SARS-CoV-2 receptor-binding domain, 100 designs each gave hit rates of 10-64%, with the strongest reported below the assay's 0.01 nM floor. Seven targets in all, each one a benchmark earlier methods had used.

Why it matters: A hit rate that high changes what a design round costs: tens of molecules to make and assay instead of thousands, which is the step where a generative model meets a bench budget. Latent Labs chose the designs and set the thresholds; GenScript ran the binding assays, and the specificity check was in-house. Its comparison takes the rivals' hit rates from their papers and remeasures only their best binders, where its own replication disagrees sharply with the published numbers, and Latent-X does not lead on every target. No peer review and no outside lab has repeated it.

By Alex Bridgland, Simon A. A. Kohl

arXiv 2507.19375 ↗

AI systems reach gold-medal standard at the Mathematics Olympiad

What happened: OpenAI and Google DeepMind report natural-language solutions reaching the IMO gold threshold.

Why it matters: Mathematical reasoning advances beyond specialized geometry and formal-only pipelines into broader problem solving.

Google DeepMind ↗

Chai Discovery's Chai-2 preprint reports a 16% hit rate designing antibodies from scratch, across 52 targets

What happened: Up to 20 designs per target, 52 targets with no antibody in the PDB. One round gave at least one hit for 50% of targets; miniproteins hit 68%.

Why it matters: If it holds, antibody design needs a few dozen wet-lab tests, not thousands. The tests were Chai's own, on a preprint, and the entry is read from the abstract only.

bioRxiv ↗

AlphaGenome predicts regulatory effects across long DNA sequences

What happened: DeepMind’s model predicts regulatory activity and variant effects directly from DNA sequence, pushing foundation modeling beyond structure toward noncoding function.

Why it matters: The harder question is no longer only whether sequence can be modeled at scale, but whether those predictions remain reliable across biological contexts and prospective use.

Google DeepMind ↗

AIMNet2-rxn, a machine-learned potential trained on reacting molecules, puts organic reaction barriers within about 2 kcal/mol of the quantum chemistry it learned from

What happened: Dylan M. Anstine, Olexandr Isayev and colleagues at Carnegie Mellon, with co-authors at Purdue, Notre Dame, Michigan State and Deep Principle, trained it on about 4.7 million density functional theory calculations of neutral, closed-shell reactions of carbon, hydrogen, nitrogen and oxygen. On 1,650 reactions its barrier heights were off by 2.0 kcal/mol (RMSD), and its transition states sat 0.07 Å from DFT's on average. A batched pathway search on one GPU converged over a million 10-atom reactions a day, against 5 for the reference DFT.

Why it matters: General-purpose machine-learned potentials are trained mostly on stable molecules, and the authors show two of them missing barriers by 15 to 25 kcal/mol on a standard reaction benchmark, too far off for kinetics. Training on reacting structures closes most of that gap, at a speed that makes searching millions of pathways practical. Every check is against DFT, the model's own teacher, including an 11-step glucose pyrolysis pathway taken from an earlier computational study that ends at the product experiments observe. Charged, open-shell and metal-containing reactions are outside its scope.

By Dylan M. Anstine, Olexandr Isayev

+2Science Advances ↗

Active learning finds a strong, ductile high-entropy alloy

What happened: Inside an alloy system researchers bounded, active learning started from 140 data points and picked eight new compositions over four rounds, each made and tensile-tested, reaching HEA05 (Fe35Ni29Co21Al12Ta3): 1.75 GPa yield at 25% uniform elongation.

Why it matters: Small data carried a real alloy design, not a large screen: 140 points and eight new compositions, each physically tested; but strength and elongation still trade off across processing routes.

Nature ↗Read More · AI4S Brief →

Xaira releases X-Atlas/Orion, a genome-wide Perturb-seq atlas of eight million cells, with the platform that made it

What happened: The bioRxiv preprint says two genome-wide screens targeting all human protein-coding genes give eight million cells, each sequenced to over 16,000 UMIs, and calls it the largest public Perturb-seq atlas. Ci Chu is the corresponding author.

Why it matters: Xaira makes its own perturbation data and shares part of it. A dataset and method paper: no drug target, no working model shown.

By Ci Chu

bioRxiv ↗

Google launches Weather Lab with an experimental cyclone model

What happened: The system produces 50 possible cyclone trajectories up to about two weeks ahead with input from operational forecasters.

Why it matters: AI forecasting moves from retrospective papers toward a live interface shaped by real forecasting institutions.

Google DeepMind ↗

An AI-discovered drug reaches randomized Phase 2a evidence

What happened: A randomized, double-blind Phase 2a trial reports safety and efficacy results for rentosertib, a generative-AI-discovered TNIK inhibitor for idiopathic pulmonary fibrosis.

Why it matters: Once an AI-discovered molecule reaches controlled human trials, clinical safety and efficacy become more important evidence than the sophistication of the discovery model.

Nature Medicine ↗

AlphaEvolve generalizes the generator–evaluator discovery loop

What happened: Gemini proposes programs while automated evaluators select and evolve them across algorithms, chip design and data-center scheduling.

Why it matters: A reusable discovery pattern emerges wherever outcomes can be measured cheaply and automatically.

Google DeepMind ↗

FutureHouse opens scientific agents to the public

What happened: Specialized agents for literature search and scientific reasoning move from internal research into a public platform.

Why it matters: Scientific-agent capability becomes a usable service rather than only a paper result.

FutureHouse ↗

Orbital Materials' Orb-v3 interatomic potentials cut latency more than tenfold and memory more than eightfold against its earlier models, at near state-of-the-art accuracy

What happened: The paper charts the trade-off between accuracy, speed and memory. It finds that models that are neither rotation-equivariant nor energy-conserving can still predict physical properties, including ones that need higher derivatives of the energy.

Why it matters: Speed and size are why a potential can run whole-system simulations. The accuracy comparison uses the authors' chosen evaluations, and nothing was made or measured in a lab.

arXiv preprint ↗

BioMap's xTrimoPGLM, a 100-billion-parameter protein language model, both reads and writes protein sequences, its authors report in Nature Methods

What happened: Bo Chen, Jie Tang, Le Song and colleagues at BioMap and Tsinghua University trained one protein language model with 100 billion parameters on 1 trillion tokens, combining the two usual ways of training: filling in hidden letters, which suits reading a sequence, and writing the next letter, which suits making one. They report it beats strong baselines on 18 protein benchmarks in four categories, underpins a structure predictor ahead of other language-model tools, and writes new sequences that resemble natural ones. A preprint came out in July 2023.

Why it matters: Most protein language models were trained either to fill in sequences, which suits reading them, or to write them letter by letter, which suits making them, and the authors say that left them struggling to do both. This paper shows one model doing both, at a size the authors call unprecedented, and it is BioMap's main peer-reviewed model paper. The weights and the downstream datasets are public on Hugging Face.

Evidence and limits: The abstract reports only computed scores on existing datasets and sequences judged by software, with no protein made and measured, and gives no margins over the baselines.

By Bo Chen, Jie Tang, Le Song

Nature Methods ↗

Isomorphic Labs raises $600 million

What happened: Its first external financing is directed toward internal oncology and immunology programs and partnered drug discovery.

Why it matters: The AlphaFold-to-drug thesis attracts large-scale outside capital before clinical proof.

Isomorphic Labs ↗

Zelixir and Shandong University's CataPro predicts how fast enzymes work, and helped find a vanillin-making enzyme 19.5 times as active as the starting one

What happened: Zechen Wang, Liangzhen Zheng, Weifeng Li and colleagues at Shandong University, the Shenzhen Institute of Advanced Technology and Zelixir, its founder Sheng Wang among them, trained a model on BRENDA and SABIO-RK data to predict kcat, Km and kcat/Km; it beat DLKcat and UniKP, most clearly on kcat, on test sets that keep similar enzymes apart. For a vanillin-making step it shortlisted 150 enzymes; five were tested. One, from Sphingobium, had 19.53 times the reference's activity, and two mutants it helped pick were 3.2 and 3.3 times as active again.

Why it matters: Enzyme speed is a large part of whether a biomanufacturing route pays, and here a prediction led to enzymes made and measured. It is one reaction, five candidates and relative activity measured by a Zelixir author, and the model only narrowed a list that sequence and structure filtering also shaped. On TurNuP's test set its fit on the least familiar enzymes was weak (R squared 0.13 against 0.33) until retrained on TurNuP's data. The paper does not say whether this vanillin work is the flavour Zelixir now makes.

By Zechen Wang, Weifeng Li, Liangzhen Zheng

Nature Communications ↗

Lila Sciences emerges with $200 million for AI science factories

What happened: Flagship Pioneering unveils Lila, founded in its labs in 2023, with $200 million of committed seed capital to build scientific models and autonomous labs for life science, chemistry and materials. Geoffrey von Maltzahn is co-founder and chief executive; Noubar Afeyan, Flagship's founder, was co-founder and chairman at launch.

Why it matters: Here the money pays for the experiments themselves, as a source of data for models, not only for software or a drug pipeline.

Flagship Pioneering ↗

Google introduces an AI co-scientist for hypothesis generation

What happened: A multi-agent Gemini system generates, critiques, ranks and evolves hypotheses; collaborators test selected biomedical proposals.

Why it matters: Hypothesis generation becomes an explicit search process rather than a single language-model response.

Google Research ↗

MatterGen generates crystals conditioned on target properties

What happened: Microsoft's diffusion model proposes stable inorganic materials and includes physical synthesis of a generated candidate.

Why it matters: Materials AI shifts from screening a fixed list to inverse design: asking what material should exist.

Nature ↗

2024

Google's GenFocal turns coarse climate projections into local weather, and cuts the error in US heatwave risk against the method the National Climate Assessment uses

What happened: Published in Nature Machine Intelligence, the model learns from 1980-1999 without needing simulated and observed days paired up, then is scored on 2010-2019. Downscaling a 100-member climate ensemble over the contiguous US, it cut bias in the 99th-percentile summer heat index by over 35% against two statistical methods, and bias in 5-day heat streaks by 44% and 57% against BCSD and STAR-ESDM.

Why it matters: Cities and insurers plan for local extremes that global climate models are too coarse to show, and this is checked against the method a US national assessment recommends, not a forecast score. The check is against reanalysis for the past decade, in one region, by the team that built it.

By Zhong Yi Wan, Fei Sha, Leonardo Zepeda-Núñez

↳ Related commentary Two of the systems they weigh
Nature Machine Intelligence ↗

Cradle's redesigned cetuximab fragment binds EGFR at 1.2 nM, the best of 400 designs Adaptyv Bio tested

What happened: In Adaptyv Bio's second binder-design competition, 130 designers sent in EGFR binders and Adaptyv made and measured 400 in its own lab; 53 bound. Cradle's entry, cetuximab's scFv with 10 framework mutations its protein language models chose, bound most tightly, with a KD of 1.2 nM. Cradle puts the unmodified scFv at 9.94 nM and the next team at 5.18 nM.

Why it matters: An outside lab measured it, so the number is not Cradle's own. It improves an approved antibody rather than making a new binder: the loops that bind EGFR were kept. One design won, and Cradle says Adaptyv's computed ranking had placed its entries between 322nd and 623rd.

Adaptyv Bio results ↗

GenCast turns weather prediction into probabilistic ensembles

What happened: The diffusion model produces ensembles up to 15 days ahead and outperforms ECMWF ENS on 97.2% of evaluated targets.

Why it matters: The field moves from one best forecast toward distributions of possible futures useful for decisions under uncertainty.

Google DeepMind ↗

Recursion completes its combination with Exscientia

What happened: Exscientia becomes a wholly owned Recursion subsidiary, combining automated biology, chemistry and clinical pipelines.

Why it matters: AI-native drug discovery enters a consolidation phase and tests whether scale can improve translation economics.

Recursion ↗

AlphaQubit improves quantum-error decoding

What happened: A transformer-based decoder reduces errors on Google's Sycamore experiments but remains too slow for real-time use.

Why it matters: A strong result arrives with a concrete systems bottleneck, illustrating the distance from benchmark gain to deployment.

Nature ↗

The Chemistry Nobel recognizes protein design and AlphaFold

What happened: David Baker receives half the prize for computational protein design; Demis Hassabis and John Jumper share the other half for structure prediction.

Why it matters: AI-enabled prediction and design receive the strongest institutional recognition in science.

↳ Related commentary The AlphaFold prize he cites
Nobel Prize ↗

The Physics Nobel recognizes neural-network foundations

What happened: John Hopfield and Geoffrey Hinton receive the prize for foundational discoveries enabling machine learning with neural networks.

Why it matters: The scientific establishment places machine learning's foundations inside the history of physics.

Nobel Prize ↗

A patient-tissue drug screen plus machine learning finds an antidepressant that boosts glioblastoma chemotherapy in animals

What happened: Nature Medicine: 132 drugs tested on surgery tissue from 27 glioblastoma patients; machine learning on drug-target networks then screened over 1 million compounds in software. Vortioxetine boosted chemotherapy in vivo.

Why it matters: Per Prevision's team page, co-founder Snijder's lab built this screening method, which Prevision sells. The drug benefit shown is in animals, not patients.

Nature Medicine ↗

PaperQA2 reports superhuman scientific literature retrieval

What happened: FutureHouse's agent exceeds PhD and postdoctoral biologists on selected literature-search tasks and releases its code.

Why it matters: Scientific agents begin by attacking the information bottleneck, with citation-aware retrieval as a measurable task.

FutureHouse ↗

Chai Discovery releases Chai-1, a structure-prediction model with open weights that companies may use

What happened: Chai-1 predicts the structures of proteins together with small molecules, DNA, RNA and chemical modifications. Weights and inference code are released under Apache 2.0, with a free web interface, commercial drug discovery included. Chai reports 77% on the PoseBusters ligand-docking benchmark against 76% for AlphaFold 3, and says it keeps most of its accuracy without multiple sequence alignments.

Why it matters: At release AlphaFold 3 was only a web server, so this gave companies a model of that class to run and build on. The scores are on public benchmarks Chai ran itself: they show the model computes well, not that its predictions hold up in a lab.

Chai Discovery ↗

AlphaProteo designs experimentally successful protein binders

What happened: DeepMind reports successful binders across seven targets, including VEGF-A, alongside an unsuccessful eighth target.

Why it matters: Protein generation is judged by wet-lab hit rate and affinity rather than structural plausibility alone.

Google DeepMind ↗

Leash Bio's BELKA competition: about 2,000 teams, 300 million training examples, and no one predicted binders in a new chemical library better than chance

What happened: Leash gave Kaggle teams about 300 million examples, aggregated from 4 billion DNA-encoded-library measurements of molecules binding three proteins, all from one triazine-core library. The test had three parts: molecules sharing building blocks with the training set, molecules that did not, and a different library, kinase0. The winner did well on shared blocks, worse on unshared ones and could not predict kinase0. Taking the 100 most confident kinase0 picks, the winner had two true binders for one protein and none for the other two, where chance gives about one.

Why it matters: It showed, before any Leash model, that a good score on one library can come from memorising building blocks, and that more data of the same kind did not carry over to a different library. Leash's later tests, a separate chemical library and protein mutants, are built on that result.

Evidence and limits: Leash designed the data, the splits and the scoring, and its own post lists reasons the gap with published hit rates could have, including that its data might be poor; it promised to release the raw replicates for others to check. Only three proteins and one library design were tested, and the practical test was a simulated catalogue pick, not a drug programme.

Leash Bio blog ↗

Recursion and Exscientia agree to combine

What happened: Two of the most visible public AI-drug-discovery companies agree an all-stock transaction.

Why it matters: The sector begins consolidating as platform promises meet the capital intensity and timelines of clinical development.

Recursion ↗

AlphaProof and AlphaGeometry 2 reach IMO silver-medal standard

What happened: The systems score 28 of 42 points, one point short of gold, though some solutions take days rather than competition hours.

Why it matters: Formal verification provides cheap, strict feedback for large-scale mathematical search.

Google DeepMind ↗

EvolutionaryScale's ESM3 protein model writes a green fluorescent protein only 58% identical to any known one, and in the lab it glows about as brightly as natural GFP

What happened: Thomas Hayes, Alexander Rives and colleagues trained ESM3 on protein sequence, structure and function together, at sizes up to 98 billion parameters. Prompted with a few key residues at GFP's light-making site, the 7-billion-parameter version produced designs the team made in E. coli. Of 88 in a first plate, several close to natural GFPs glowed as brightly; one far from them glowed, 50 times dimmer. A second plate grown from it gave esmGFP, 58% identical to the nearest known fluorescent protein and 36% to jellyfish GFP.

Why it matters: Engineered GFPs usually carry 5 to 15 mutations, and at most 40 to 50 with machine learning; esmGFP is 96 of 229 residues from its closest known relative, a gap the authors estimate evolution takes over 500 million years to open. So a working function was made far from known sequences and shown in the lab, not only predicted. The test is narrow: one protein family, the authors' own assays, two plates of designs, fluorescence measured in bacteria, no solved structure. A 1.4-billion-parameter model was released openly; Science published the paper in January 2025.

By Thomas Hayes, Alexander Rives

↳ The ESM team's earlier ESMFold atlas, at Meta ESMFold maps more than 600 million metagenomic proteins
bioRxiv; Science 2025 ↗

AlphaFold 3 predicts interactions across biomolecules

What happened: The model extends beyond proteins to complexes containing DNA, RNA, ligands and modified residues.

Why it matters: Structure prediction moves closer to the interaction problems central to drug discovery, while restricted access triggers an openness dispute.

Nature ↗

Leash Bio, a Salt Lake City start-up of former Recursion scientists that collects its own protein-binding data, raises a $9.3M seed round led by Springtide Ventures

What happened: MetaPlanet, Top Harvest Capital, Mitsui Global Investment, MFV Partners and Recursion's Chris Gibson and Blake Borgeson joined. CEO and co-founder Ian Quigley's company said it had measured over 17 billion protein-chemical interactions and planned to screen 500+ protein targets by 2025. The money is for more data collection and computing, a general machine-learning model of medicinal chemistry, and moving internal programmes toward animal studies. Five of its six employees came from Recursion; Claire Smith of Springtide spoke for the lead.

Why it matters: The money went to a pitch built on data rather than a model: the company's own measurements of proteins binding chemicals, collected first. A six-person team raising $9.3M is a small bet on that approach; the BELKA competition launched with it, and the models and agent environments Leash later published rest on the same screens.

Evidence and limits: The 17 billion measurements and the 500-target plan are the company's own statements in its release. The date is the release's dateline, as reproduced by The AI Insider; the release itself (GlobeNewswire) was not opened, and a $7.9M figure attributed to Endpoints was seen only in a search snippet.

The AI Insider ↗

A Liverpool lab steers its search with a model trained on known crystals and finds Li7Si2S7I, a new lithium conductor at about 10 mS/cm

What happened: Guopeng Han, John B. Claridge, Matthew J. Rosseinsky and colleagues at the University of Liverpool narrowed 296 lithium four-element systems, let a variational autoencoder rank them (Li-Si-S-I came 9th), chose Li-Si-S-I for its two very different anion sizes, and aimed synthesis with structure prediction. The new phase Li7Si2S7I has a total conductivity of 1.01 x 10^-2 S/cm at 303 K and ran 240 hours of lithium plating and stripping.

Why it matters: This is the lab Matter Machine came out of, and the result shows its method reaching a material worth testing, not only a new structure. The model only ranked chemistries; the design idea, packing two anions like an alloy, was the chemists'. The same team made and measured it, the material decomposes above 2.5 V, and a phase change below room temperature cuts its conductivity.

By Guopeng Han, John B. Claridge, Matthew J. Rosseinsky

Science ↗

AlphaGeometry approaches Olympiad gold-medal performance

What happened: The neuro-symbolic system solves 25 of 30 historical Olympiad geometry problems within competition time limits.

Why it matters: Language-model generation and symbolic deduction form a verifiable search loop for mathematics.

Nature ↗

Isomorphic Labs signs Lilly and Novartis collaborations

What happened: Two multi-target drug-discovery collaborations carry nearly $3 billion in potential value, excluding royalties.

Why it matters: Large pharmaceutical companies place substantial milestone-based bets on AI-first drug design.

Isomorphic Labs ↗

2023

Coscientist plans and executes chemistry experiments

What happened: A GPT-4-based multi-agent system searches documentation, plans reactions, writes control code and operates a cloud laboratory.

Why it matters: The LLM becomes an orchestrator for a real experimental workflow rather than only a scientific text interface.

Nature ↗

FunSearch pairs language-model generation with an executable evaluator

What happened: The system evolves LLM-generated programs against an automated evaluator and reports new cap-set constructions alongside improved bin-packing heuristics.

Why it matters: A reusable discovery pattern appears: models can search broadly when incorrect ideas are rejected cheaply and objectively by execution.

Google DeepMind ↗

Atomic AI's ATOM-1 preprint: an RNA model trained on chemical-mapping data it measured itself

What happened: Raphael Townshend's team trained the model on in-house chemical-mapping data, which the abstract puts at millions of RNA sequences. Small probe networks on its embeddings reach state-of-the-art accuracy on RNA prediction tasks after a little extra data.

Why it matters: A startup measuring its own training data is the model's real edge. The abstract names no benchmark, so how far ahead it is stays unchecked, and nothing here is a designed RNA tested in a lab.

By Nicholas Boyd, Raphael J. L. Townshend

bioRxiv ↗

GNoME expands the computed landscape of stable materials

What happened: DeepMind reports 2.2 million candidate crystal structures, including 380,000 added to a set judged most stable.

Why it matters: Materials screening reaches industrial scale while sharpening debate over what should count as a discovered material.

Nature ↗

A-Lab closes a materials synthesis loop

What happened: The autonomous lab runs 353 experiments in 17 days and realizes 36 of 57 target inorganic materials.

Why it matters: Prediction, literature-derived recipes, robotics, measurement and active learning operate as one physical loop.

↳ Related commentary The A-Lab result he cites
Nature ↗

Generate:Biomedicines publishes Chroma, a diffusion model that writes new protein structures and sequences to order, and makes 310 of its designs in the lab

What happened: John B. Ingraham, Gevorg Grigoryan and colleagues, all at the company, describe a generator steered by symmetry, a target shape, a protein class or a text prompt. They made 268 unconditioned and 42 conditioned designs in E. coli without first filtering them by structure prediction. All 172 of the first unconditioned set scored above the negative control in a pooled solubility screen, and western blots confirmed 19 of the top 20. Two crystal structures matched their designs to about 1 Å. The code is Apache 2.0.

Why it matters: The record holds Generate's IPO, its Phase 3 asthma antibody and its deals, but not its main published method. Chroma puts the design conditions into the sampling itself, so one model takes a symmetry, a shape or a text prompt where otherwise each would need its own tool, and its code is open for others to test.

Evidence and limits: What was measured is that designs express, fold and match their models; no design was tested for a function. Every author works for the company, seven designs were purified and two crystallised.

By John B. Ingraham, Gevorg Grigoryan

Nature ↗

GraphCast beats a leading physics-based weather system

What happened: The graph neural network outperforms ECMWF HRES on more than 90% of 1,380 verification targets and produces a ten-day forecast in under a minute.

Why it matters: Learned forecasting proves competitive under a mature, continuously reality-checked evaluation regime.

Science ↗

Magnitude Biosciences' camera array reads a drug's anti-ageing effect in worms in 7 days, where the lifespan assay beside it took 40

What happened: Giulia Zavagno, Christopher Saunter and David Weinkove of Durham and Magnitude describe WormGazer: fixed cameras imaging many Petri dishes at once, moving nothing, scoring how many worms move and how fast. Beside a manual lifespan assay, 390 worms per condition per method, seven days of imaging showed all three sulfamethoxazole doses beating control on healthspan; the lifespan arm took 40 days to reach mean survivals of 20, 21 and 21 days against 18. The age-1 mutant spent 93.5% more time moving than wild type over days 2 to 7.

Why it matters: This is the published method behind a company the funding board describes as reading worms out with machine learning, and the paper has none: movement is found by thresholding which pixels changed between frames, with a 10 um/s cut-off to drop noise. What it buys is time (a healthspan readout in a week instead of a survival curve in six), and the comparison was run by the authors, two of whom are shareholders and directors of the company.

By Giulia Zavagno, David Weinkove

GeroScience ↗

FutureHouse launches to build an AI scientist

What happened: The Schmidt-backed nonprofit begins building scientific agents, initially focused on biology and scientific literature.

Why it matters: AI-for-science agent development becomes the mission of a dedicated research organisation rather than a side project.

FutureHouse ↗

AlphaMissense maps 71 million possible human missense variants

What happened: The model classifies most possible missense variants as likely benign or pathogenic, vastly expanding the small experimentally interpreted set.

Why it matters: AlphaFold-derived representations move from structure prediction into genome interpretation and disease research.

Science ↗

RFdiffusion turns protein structure prediction into protein design

What happened: A diffusion model generates novel protein backbones, with hundreds of designs tested experimentally.

Why it matters: The central question shifts from “what shape does this sequence have?” to “what sequence and structure should exist?”

Nature ↗

Pangu-Weather challenges conventional global forecasting

What happened: Huawei's 3D neural network reports stronger deterministic forecasts than ECMWF's operational system while running more than 10,000 times faster.

Why it matters: A mature scientific field with strict operational evaluation becomes one of AI4S's clearest tests outside biology.

Nature ↗

AlphaDev's sorting algorithms enter the C++ library

What happened: Reinforcement learning finds faster low-level sorting routines that are added to LLVM's libc++ implementation.

Why it matters: An AI-discovered algorithm moves from a paper into infrastructure used by developers at scale.

Nature ↗

Google merges Brain and DeepMind into Google DeepMind

What happened: Demis Hassabis takes charge of the combined unit; Jeff Dean becomes Google's Chief Scientist.

Why it matters: Talent, compute and model development are concentrated inside one organisation that also houses major AI4S programs.

Google ↗

2022

Meta withdraws the Galactica scientific language-model demo

What happened: The system produces authoritative-looking false claims and citations, and the public demo disappears after three days.

Why it matters: Scientific fluency is shown to be different from scientific reliability.

MIT Technology Review ↗

ESMFold maps more than 600 million metagenomic proteins

What happened: Meta uses a protein language model to predict structures without the multiple-sequence alignments required by AlphaFold.

Why it matters: Protein language modeling offers a faster, complementary route to structure at unprecedented scale.

Science ↗

AlphaTensor discovers new matrix-multiplication algorithms

What happened: Reinforcement learning finds algorithms that improve on long-standing human-designed solutions for selected matrix sizes.

Why it matters: Scientific search becomes a game with an executable evaluator, a pattern later generalized by AlphaDev and AlphaEvolve.

Nature ↗

AlphaFold DB expands beyond 200 million structures

What happened: The database grows from around one million structures to predictions covering nearly every catalogued protein.

Why it matters: Prediction at planetary scale changes protein structure from a scarce result into a queryable layer of biology.

Google DeepMind ↗

A reinforcement-learning system controls plasma in a tokamak

What happened: A single neural controller commands the magnetic coils of Switzerland's TCV reactor and sustains difficult plasma shapes.

Why it matters: AI moves beyond offline prediction and directly operates a real scientific instrument.

Nature ↗

2021

Alphabet launches Isomorphic Labs

What happened: A new commercial company led by Demis Hassabis is created to rebuild drug discovery around an AI-first approach.

Why it matters: AlphaFold's scientific success produces a dedicated company aimed at therapeutic translation.

Isomorphic Labs ↗

A model trained on known crystals ranks untried element combinations, and the fifth-ranked one, Li-Sn-S-Cl, yields a new lithium conductor

What happened: Andrij Vasylenko, Matthew J. Rosseinsky and colleagues at the University of Liverpool trained a variational autoencoder on 2,021 four-element phases in the Inorganic Crystal Structure Database and ranked unexplored combinations by how likely they are to hold new compounds. They chose Li-Sn-S-Cl, ranked fifth, partly for its parent compounds' conductivity, aimed synthesis with structure prediction, and made Li3.3SnS3.3Cl0.7. Its bulk conductivity at room temperature is 3.2 x 10^-5 S/cm.

Why it matters: The model helped pick which chemistry to try, and that pick did hold a new compound. It did not find a better conductor: the paper puts it slightly below known Li4SnS4, says researchers made the final call, and notes that a model trained only on compounds that exist cannot rule other choices out. The same team made and measured it.

By Andrij Vasylenko, Matthew J. Rosseinsky

Nature Communications ↗

The AlphaFold Protein Structure Database opens

What happened: The first release makes roughly 350,000 predicted structures searchable, including the human proteome.

Why it matters: Model inference becomes a public research resource that can be reused without rerunning the model.

EMBL ↗

AlphaFold 2 is published and released as open source

What happened: The architecture, code and methods behind the CASP14 result become available to the research community.

Why it matters: The breakthrough starts turning into shared scientific infrastructure rather than a single demonstration.

Nature ↗

Machine learning points a Liverpool lab at barium-yttrium titanates, and the new oxide it makes there has the lowest thermal conductivity reported for a first-row transition-metal oxide

What happened: Christopher M. Collins, Matthew J. Rosseinsky and colleagues mapped Y-Sr-Ti-O and Ba-Y-Ti-O with computed probe structures and used random-forest and neural-network models of thermal conductivity to pick a region predicted near 7 W/mK, against about 16 elsewhere. There they made Ba10Y6Ti4O27, an aperiodic but ordered titanate, whose measured thermal conductivity at 298 K is 0.715 W/mK.

Why it matters: The models pointed at a region, not at this compound: the paper says its aperiodic structure is unlike anything in the training set, so the record low came from the chemists' search inside the region the models chose. The same team made and measured it, and low heat flow is a property heat barriers and thermoelectrics need.

By Christopher M. Collins, Matthew J. Rosseinsky

Angewandte Chemie ↗

2020

AlphaFold 2 changes the protein-structure problem at CASP14

What happened: DeepMind reports accuracy competitive with experimental structures in the blind CASP assessment.

Why it matters: A decades-old scientific bottleneck becomes a tractable learned-inference problem.

Google DeepMind ↗

2019

Owkin's MesoNet predicts mesothelioma survival from whole-slide pathology images with no pathologist-marked regions, validated on a French cohort and on TCGA

What happened: Published in Nature Medicine, it beat current pathology classification at predicting survival. The regions it relied on lay mainly in the stroma and were tied to inflammation, cell diversity and vacuolisation.

Why it matters: An early case of a startup's model pointing to new tissue features. It is retrospective on stored slides, not a prospective test or a clinical decision.

Nature Medicine ↗

2017

A computed energy map sends a Liverpool lab to one corner of a five-element oxide system, and two new crystal structures turn up there

What happened: C. Collins, Matthew J. Rosseinsky and colleagues at the University of Liverpool built candidate structures across Y-Sr-Ca-Ga-O by stacking perovskite-like blocks and ranked their energies with DFT; the lowest sat 8 meV/atom above the line of known stable compounds. In 34 reactions around that composition they made two new phases and solved their structures: one related to melilite, one a 64-fold perovskite superstructure.

Why it matters: It is the earliest result on the record from the lab Matter Machine came out of. The computation chose where to search, not what would form: the paper says a candidate structure need not be the real one, and its best candidate sits above the new stability line. No useful property was measured, and the same team made the prediction and the check.

By C. Collins, Matthew J. Rosseinsky

Nature ↗